Guide to the Human Genome
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Name: PAPOLB Sequence: fasta or formatted (637aa) NCBI GI: 77874206
Description:

poly(A) polymerase beta (testis specific)

Referenced in:

Polyadenylation
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         38           1
 C cysteine            1.4          9           1
 D aspartate           4.2         27           2
 E glutamate           7.2         46           5
 F phenylalanine       4.2         27           2
 G glycine             3.8         24           2
 H histidine           2.5         16           2
 I isoleucine          6.4         41           2
 K lysine              5.2         33           2
 L leucine            11.5         73           2
 M methionine          2.5         16           2
 N asparagine          4.6         29           2
 P proline             6.4         41           3
 Q glutamine           4.2         27           3
 R arginine            4.9         31           2
 S serine              8.9         57           3
 T threonine           5.5         35           2
 V valine              7.1         45           2
 W tryptophan          1.4          9           1
 Y tyrosine            2.0         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly(A) polymerase beta (testis specific) 
PAPOLA                0.838   poly(A) polymerase alpha 
PAPOLG                0.592   poly(A) polymerase gamma 
POU2F1                0.010   POU class 2 homeobox 1 
STK10                 0.008   serine/threonine kinase 10 
CDH23                 0.008   cadherin-like 23 isoform 1 precursor 
SCG3                  0.007   secretogranin III 
EFCAB5                0.006   EF-hand calcium binding domain 5 isoform b 
EFCAB5                0.006   EF-hand calcium binding domain 5 isoform a 
SP3                   0.006   Sp3 transcription factor isoform 2 
SP3                   0.006   Sp3 transcription factor isoform 1 
EPC1                  0.006   enhancer of polycomb 1 
CCDC7                 0.006   coiled-coil domain containing 7 
CCDC7                 0.006   coiled-coil domain containing 7 
NSUN3                 0.006   NOL1/NOP2/Sun domain family, member 3 
STAC2                 0.005   SH3 and cysteine rich domain 2 
LOC100131251          0.005   PREDICTED: hypothetical protein 
LOC100131251          0.005   PREDICTED: hypothetical protein 
SALL2                 0.005   sal-like 2 
C14orf145             0.005   hypothetical protein LOC145508 
CNNM2                 0.005   cyclin M2 isoform 3 
CNNM2                 0.005   cyclin M2 isoform 2 
CNNM2                 0.005   cyclin M2 isoform 1 
GABBR1                0.004   gamma-aminobutyric acid (GABA) B receptor 1 isoform...
GABBR1                0.004   gamma-aminobutyric acid (GABA) B receptor 1 isoform ...
GABBR1                0.004   gamma-aminobutyric acid (GABA) B receptor 1 isoform ...
RANBP9                0.004   RAN binding protein 9 
RELA                  0.004   v-rel reticuloendotheliosis viral oncogene homolog ...
RELA                  0.004   v-rel reticuloendotheliosis viral oncogene homolog ...
SHANK1                0.004   SH3 and multiple ankyrin repeat domains 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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