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Search of human proteins with 186972126
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|186972126 scleraxis homolog A [Homo sapiens]
(201 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148922889 scleraxis homolog B [Homo sapiens] 419 e-118
gi|186972126 scleraxis homolog A [Homo sapiens] 419 e-118
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo... 181 5e-46
gi|12545384 basic helix-loop-helix transcription factor HAND2 [H... 79 3e-15
gi|116805332 musculin [Homo sapiens] 78 6e-15
gi|4507741 twist [Homo sapiens] 77 8e-15
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi... 74 1e-13
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho... 72 2e-13
gi|17981708 twist homolog 2 [Homo sapiens] 69 3e-12
gi|38202237 transcription factor 21 [Homo sapiens] 69 4e-12
gi|38202239 transcription factor 21 [Homo sapiens] 69 4e-12
gi|21553337 atonal homolog 7 [Homo sapiens] 67 8e-12
gi|239756681 PREDICTED: basic helix-loop-helix family, member a9... 67 1e-11
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9... 67 1e-11
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9... 67 1e-11
gi|5031943 nescient helix loop helix 1 [Homo sapiens] 67 1e-11
gi|68989258 neurogenin 3 [Homo sapiens] 64 1e-10
gi|38455396 neurogenin 1 [Homo sapiens] 63 1e-10
gi|31077092 neurogenin 2 [Homo sapiens] 63 2e-10
gi|161484632 nescient helix loop helix 2 [Homo sapiens] 62 3e-10
gi|5031945 nescient helix loop helix 2 [Homo sapiens] 62 3e-10
gi|30039710 pancreas specific transcription factor, 1a [Homo sap... 62 4e-10
gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo sapi... 62 4e-10
gi|4885075 atonal homolog 1 [Homo sapiens] 61 6e-10
gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens] 60 1e-09
gi|98986461 neurogenic differentiation 2 [Homo sapiens] 59 4e-09
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens] 58 6e-09
gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens] 57 1e-08
gi|121114306 neurogenic differentiation 1 [Homo sapiens] 56 2e-08
gi|27475985 neurogenic differentiation 6 [Homo sapiens] 55 3e-08
>gi|148922889 scleraxis homolog B [Homo sapiens]
Length = 201
Score = 419 bits (1077), Expect = e-118
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRR 60
MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRR
Sbjct: 1 MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRR 60
Query: 61 AGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLA 120
AGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLA
Sbjct: 61 AGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLA 120
Query: 121 SSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICT 180
SSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICT
Sbjct: 121 SSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICT 180
Query: 181 FCLSNQRKLSKDRDRKTAIRS 201
FCLSNQRKLSKDRDRKTAIRS
Sbjct: 181 FCLSNQRKLSKDRDRKTAIRS 201
>gi|186972126 scleraxis homolog A [Homo sapiens]
Length = 201
Score = 419 bits (1077), Expect = e-118
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRR 60
MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRR
Sbjct: 1 MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRR 60
Query: 61 AGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLA 120
AGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLA
Sbjct: 61 AGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLA 120
Query: 121 SSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICT 180
SSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICT
Sbjct: 121 SSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQICT 180
Query: 181 FCLSNQRKLSKDRDRKTAIRS 201
FCLSNQRKLSKDRDRKTAIRS
Sbjct: 181 FCLSNQRKLSKDRDRKTAIRS 201
>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
sapiens]
Length = 199
Score = 181 bits (458), Expect = 5e-46
Identities = 114/197 (57%), Positives = 125/197 (63%), Gaps = 20/197 (10%)
Query: 1 MSFATLRPAPPGRYLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRR---AG 57
M+FA LRP LYP+V LSEDE+ S+S SD+ G + ARR G
Sbjct: 1 MAFALLRPVG-AHVLYPDVRLLSEDEENRSESDASDQS----FGCCEGPEAARRGPGPGG 55
Query: 58 GRRAGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETL 117
GRRAGGGG G P RQR ANARERDRT SVNTAFTALRTLIPTEP DRKLSKIETL
Sbjct: 56 GRRAGGGGGAG-PVVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETL 114
Query: 118 RLASSYISHLGNVLLAGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQ 177
RLASSYI+HL NVLL G++ DGQPC F AA + P A DG QP+
Sbjct: 115 RLASSYIAHLANVLLLGDSADDGQPC------FRAAGSAK----GAVPAAADG-GRQPRS 163
Query: 178 ICTFCLSNQRKLSKDRD 194
ICTFCLSNQRK RD
Sbjct: 164 ICTFCLSNQRKGGGRRD 180
>gi|12545384 basic helix-loop-helix transcription factor HAND2 [Homo
sapiens]
Length = 217
Score = 78.6 bits (192), Expect = 3e-15
Identities = 42/85 (49%), Positives = 56/85 (65%)
Query: 57 GGRRAGGGGPGGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIET 116
GG G G PG R ++R TAN +ER RT S+N+AF LR IP PAD KLSKI+T
Sbjct: 81 GGVPPGAGPPGLGGPRPVKRRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKT 140
Query: 117 LRLASSYISHLGNVLLAGEACGDGQ 141
LRLA+SYI++L ++L + G+ +
Sbjct: 141 LRLATSYIAYLMDLLAKDDQNGEAE 165
>gi|116805332 musculin [Homo sapiens]
Length = 206
Score = 77.8 bits (190), Expect = 6e-15
Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 20/122 (16%)
Query: 30 SDSSGSDEKPCRVHAARCGLQGARRRAGGRR-----AGGGGPGGRPG---REP------- 74
SD+S ++E+ RC L A G +R AGGGG GG G ++P
Sbjct: 42 SDNSSAEEEDPDGEEERCALGTAGSAEGCKRKRPRVAGGGGAGGSAGGGGKKPLPAKGSA 101
Query: 75 -----RQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGN 129
QR+ ANARER R ++ AF+ L+T +P P D KLSK++TLRLASSYI+HL
Sbjct: 102 AECKQSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQ 161
Query: 130 VL 131
+L
Sbjct: 162 LL 163
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 77.4 bits (189), Expect = 8e-15
Identities = 51/108 (47%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 29 GSDSSGSDEKPCR-VHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANARERDR 87
G D GS + R +A CG G GG +GGG P + QR AN RER R
Sbjct: 62 GGDEPGSPAQGKRGKKSAGCGGGGGAGGGGGSSSGGGSPQSYEELQT-QRVMANVRERQR 120
Query: 88 TNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
T S+N AF ALR +IPT P+D KLSKI+TL+LA+ YI L VL + E
Sbjct: 121 TQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDE 167
>gi|29126247 basic helix-loop-helix family, member a15 [Homo
sapiens]
Length = 189
Score = 73.6 bits (179), Expect = 1e-13
Identities = 46/101 (45%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 32 SSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANARERDRTNSV 91
+ G +P R AAR +G RRR G GPGGR ++R +N RER R + +
Sbjct: 38 AKGLRSRPARA-AARAPGEGRRRRPGP-----SGPGGRRDSSIQRRLESNERERQRMHKL 91
Query: 92 NTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLL 132
N AF ALR +IP AD+KLSKIETL LA +YI L +L
Sbjct: 92 NNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATIL 132
>gi|4758506 basic helix-loop-helix transcription factor HAND1 [Homo
sapiens]
Length = 215
Score = 72.4 bits (176), Expect = 2e-13
Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 11/95 (11%)
Query: 56 AGGRRAGGGGPGGRPGREP-----------RQRHTANARERDRTNSVNTAFTALRTLIPT 104
A A GP RPG+ P R++ + +ER RT S+N+AF LR IP
Sbjct: 64 AAAAAATAYGPDARPGQSPGRLEALGGRLGRRKGSGPKKERRRTESINSAFAELRECIPN 123
Query: 105 EPADRKLSKIETLRLASSYISHLGNVLLAGEACGD 139
PAD KLSKI+TLRLA+SYI++L +VL GD
Sbjct: 124 VPADTKLSKIKTLRLATSYIAYLMDVLAKDAQSGD 158
>gi|17981708 twist homolog 2 [Homo sapiens]
Length = 160
Score = 68.9 bits (167), Expect = 3e-12
Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 20 SPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAG---GRRAGGGGPGGRPGREPR- 75
SP+S + G+ + +P R R + + G+R G P + E +
Sbjct: 7 SPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFEELQS 66
Query: 76 QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
QR AN RER RT S+N AF ALR +IPT P+D KLSKI+TL+LA+ YI L VL + E
Sbjct: 67 QRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDE 125
>gi|38202237 transcription factor 21 [Homo sapiens]
Length = 179
Score = 68.6 bits (166), Expect = 4e-12
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 9/106 (8%)
Query: 26 EDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANARER 85
E+ + +GS +K R GL G RR+A +++ G + G++ QR+ ANARER
Sbjct: 39 EESSNCENGSPQK------GRGGL-GKRRKAPTKKSPLSGVS-QEGKQV-QRNAANARER 89
Query: 86 DRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
R ++ AF+ L+T +P P D KLSK++TLRLASSYI+HL +L
Sbjct: 90 ARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQIL 135
>gi|38202239 transcription factor 21 [Homo sapiens]
Length = 179
Score = 68.6 bits (166), Expect = 4e-12
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 9/106 (8%)
Query: 26 EDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANARER 85
E+ + +GS +K R GL G RR+A +++ G + G++ QR+ ANARER
Sbjct: 39 EESSNCENGSPQK------GRGGL-GKRRKAPTKKSPLSGVS-QEGKQV-QRNAANARER 89
Query: 86 DRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
R ++ AF+ L+T +P P D KLSK++TLRLASSYI+HL +L
Sbjct: 90 ARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQIL 135
>gi|21553337 atonal homolog 7 [Homo sapiens]
Length = 152
Score = 67.4 bits (163), Expect = 8e-12
Identities = 43/102 (42%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 38 KPCRVHAARCGLQGARRRAGGRRAGGGGPG-GRPGREPRQRHTANARERDRTNSVNTAFT 96
K C+ G + A AGG G G GR R+R ANARER R +NTAF
Sbjct: 2 KSCKPSGPPAGARVAPPCAGGTECAGTCAGAGRLESAARRRLAANARERRRMQGLNTAFD 61
Query: 97 ALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGEACG 138
LR ++P D+KLSK ETL++A SYI L +L E G
Sbjct: 62 RLRRVVPQWGQDKKLSKYETLQMALSYIMALTRILAEAERFG 103
>gi|239756681 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 203
Score = 67.0 bits (162), Expect = 1e-11
Identities = 54/157 (34%), Positives = 66/157 (42%), Gaps = 12/157 (7%)
Query: 23 SEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANA 82
+ED G D + A C A AG RRA RP R +R AN
Sbjct: 20 AEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRA-------RPVRSKARRMAANV 72
Query: 83 RERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGEA----CG 138
RER R N AF ALR + + ++LSKI TLR A I+ L VL A A CG
Sbjct: 73 RERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGPCG 132
Query: 139 DGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQP 175
+ CH A G+ PPPP P + +P
Sbjct: 133 HLE-CHGPAARGDTGDTGASPPPPAGPSLARPDAARP 168
>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 67.0 bits (162), Expect = 1e-11
Identities = 54/157 (34%), Positives = 66/157 (42%), Gaps = 12/157 (7%)
Query: 23 SEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANA 82
+ED G D + A C A AG RRA RP R +R AN
Sbjct: 20 AEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRA-------RPVRSKARRMAANV 72
Query: 83 RERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGEA----CG 138
RER R N AF ALR + + ++LSKI TLR A I+ L VL A A CG
Sbjct: 73 RERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGPCG 132
Query: 139 DGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQP 175
+ CH A G+ PPPP P + +P
Sbjct: 133 HLE-CHGPAARGDTGDTGASPPPPAGPSLARPDAARP 168
>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 67.0 bits (162), Expect = 1e-11
Identities = 54/157 (34%), Positives = 66/157 (42%), Gaps = 12/157 (7%)
Query: 23 SEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANA 82
+ED G D + A C A AG RRA RP R +R AN
Sbjct: 20 AEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRA-------RPVRSKARRMAANV 72
Query: 83 RERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGEA----CG 138
RER R N AF ALR + + ++LSKI TLR A I+ L VL A A CG
Sbjct: 73 RERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGPCG 132
Query: 139 DGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQP 175
+ CH A G+ PPPP P + +P
Sbjct: 133 HLE-CHGPAARGDTGDTGASPPPPAGPSLARPDAARP 168
>gi|5031943 nescient helix loop helix 1 [Homo sapiens]
Length = 133
Score = 66.6 bits (161), Expect = 1e-11
Identities = 47/102 (46%), Positives = 53/102 (51%), Gaps = 26/102 (25%)
Query: 56 AGGRRAGGGGPGG---------RPGR---------EPRQRHTANA--------RERDRTN 89
AG AG GGPGG PGR E R+R A A RER R
Sbjct: 30 AGPDGAGPGGPGGGQARGPEPGEPGRKDLQHLSREERRRRRRATAKYRTAHATRERIRVE 89
Query: 90 SVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
+ N AF LR L+PT P D+KLSKIE LRLA YIS+L +VL
Sbjct: 90 AFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 131
>gi|68989258 neurogenin 3 [Homo sapiens]
Length = 214
Score = 63.5 bits (153), Expect = 1e-10
Identities = 53/160 (33%), Positives = 73/160 (45%), Gaps = 22/160 (13%)
Query: 23 SEDEDRGSDSSGSDEKPCRVHAARC---GLQGARRRAGGRRAGGGGPGGRPGREPRQRHT 79
SEDE S+ R + A G +GA R+ RR G P ++R
Sbjct: 25 SEDEVTCPTSAPPSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRRSR 84
Query: 80 ---ANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE- 135
AN RER+R +++N+A ALR ++PT P D KL+KIETLR A +YI L L +
Sbjct: 85 RKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRIADH 144
Query: 136 ----------ACGD-----GQPCHSGPAFFHAARAGSPPP 160
CG+ G P G + ++AGS P
Sbjct: 145 SLYALEPPAPHCGELGSPGGSPGDWGSLYSPVSQAGSLSP 184
>gi|38455396 neurogenin 1 [Homo sapiens]
Length = 237
Score = 63.2 bits (152), Expect = 1e-10
Identities = 60/188 (31%), Positives = 78/188 (41%), Gaps = 45/188 (23%)
Query: 19 VSPLSEDEDRGSDSSG--SDEKPCRVHAARCGLQG----ARRRAGGRRAGGGGPGGRPGR 72
+S L GSD SG +DE+ C G ARR A PG +
Sbjct: 9 ISDLDCASSSGSDLSGFLTDEEDCARLQQAASASGPPAPARRGAPNISRASEVPGAQDDE 68
Query: 73 EPRQRHT---------------------ANARERDRTNSVNTAFTALRTLIPTEPADRKL 111
+ R+R AN RER+R +++N A ALR+++P+ P D KL
Sbjct: 69 QERRRRRGRTRVRSEALLHSLRRSRRVKANDRERNRMHNLNAALDALRSVLPSFPDDTKL 128
Query: 112 SKIETLRLASSYISHLGNVL-LAGEACGDGQPCHSGPAFFHAARAGSPPP------PPPP 164
+KIETLR A +YI L L LA + G AR PP P PP
Sbjct: 129 TKIETLRFAYNYIWALAETLRLADQGLPGG-----------GARERLLPPQCVPCLPGPP 177
Query: 165 PPARDGEN 172
PA D E+
Sbjct: 178 SPASDAES 185
>gi|31077092 neurogenin 2 [Homo sapiens]
Length = 272
Score = 62.8 bits (151), Expect = 2e-10
Identities = 52/160 (32%), Positives = 65/160 (40%), Gaps = 43/160 (26%)
Query: 32 SSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGG----------------------R 69
SS +DE+ G G RR G AG G GG R
Sbjct: 34 SSSADEE----EEEEPGASGGARRQRGAEAGQGARGGVAAGAEGCRPARLLGLVHDCKRR 89
Query: 70 PGR-----------------EPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLS 112
P R + +R AN RER+R +++N A ALR ++PT P D KL+
Sbjct: 90 PSRARAVSRGAKTAETVQRIKKTRRLKANNRERNRMHNLNAALDALREVLPTFPEDAKLT 149
Query: 113 KIETLRLASSYISHLGNVLLAGEACGDGQPCHSGPAFFHA 152
KIETLR A +YI L L + CG G G F A
Sbjct: 150 KIETLRFAHNYIWALTETLRLADHCGGGGGGLPGALFSEA 189
>gi|161484632 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 62.0 bits (149), Expect = 3e-10
Identities = 44/113 (38%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Query: 19 VSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRH 78
VS L E+ D G H + + RRR RRA + R
Sbjct: 35 VSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKRRR---RRATA-----------KYRS 80
Query: 79 TANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
RER R + N AF LR L+PT P D+KLSKIE LRLA YIS+L +VL
Sbjct: 81 AHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
>gi|5031945 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 62.0 bits (149), Expect = 3e-10
Identities = 44/113 (38%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Query: 19 VSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRH 78
VS L E+ D G H + + RRR RRA + R
Sbjct: 35 VSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKRRR---RRATA-----------KYRS 80
Query: 79 TANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
RER R + N AF LR L+PT P D+KLSKIE LRLA YIS+L +VL
Sbjct: 81 AHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
>gi|30039710 pancreas specific transcription factor, 1a [Homo
sapiens]
Length = 328
Score = 61.6 bits (148), Expect = 4e-10
Identities = 45/106 (42%), Positives = 56/106 (52%), Gaps = 12/106 (11%)
Query: 48 GLQGARRRAGGRRAGGGGPGGRPGREPRQ-RHTANARERDRTNSVNTAFTALRTLIPTEP 106
GL GA A RR R E +Q R AN RER R S+N AF LR+ IPT P
Sbjct: 140 GLSGAAAAAARRRRRV-----RSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLP 194
Query: 107 ADRKLSKIETLRLASSYISHLGNVLLA------GEACGDGQPCHSG 146
+++LSK++TLRLA YI+ L ++ A G A G G P G
Sbjct: 195 YEKRLSKVDTLRLAIGYINFLSELVQADLPLRGGGAGGCGGPGGGG 240
>gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo
sapiens]
Length = 280
Score = 61.6 bits (148), Expect = 4e-10
Identities = 48/126 (38%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 67 GGRPGREPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISH 126
G +P + R+ T N+RER R +VN AF LR L+PT P DRKLSK E LRLA YI
Sbjct: 143 GHQPQKVARRVFT-NSRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGF 201
Query: 127 LGNVL---LAGEACGDGQP--------------CHSGPAFFHAARAGSPPPPPPPPPARD 169
L +L A A G P G A A S P PP P
Sbjct: 202 LVRLLRDQAAALAAGPTPPGPRKRPVHRVPDDGARRGSGRRAEAAARSQPAPPADPDGSP 261
Query: 170 GENTQP 175
G +P
Sbjct: 262 GGAARP 267
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 61.2 bits (147), Expect = 6e-10
Identities = 45/137 (32%), Positives = 59/137 (43%), Gaps = 21/137 (15%)
Query: 29 GSDSSGSDEKPCRVHAARCGLQGAR--RRAGGRRAGGGGPGGRPGREPRQRHTANARERD 86
G SS P +V C L+G G R G + ++R ANARER
Sbjct: 111 GGASSSKSPGPVKVREQLCKLKGGVVVDELGCSRQRAPSSKQVNGVQKQRRLAANARERR 170
Query: 87 RTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGEACGDGQPCHSG 146
R + +N AF LR +IP+ D+KLSK ETL++A YI+ L +L
Sbjct: 171 RMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELL--------------- 215
Query: 147 PAFFHAARAGSPPPPPP 163
G PPPPP
Sbjct: 216 ----QTPSGGEQPPPPP 228
>gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens]
Length = 108
Score = 60.1 bits (144), Expect = 1e-09
Identities = 32/51 (62%), Positives = 36/51 (70%)
Query: 81 NARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
N RER R +VN+AF LR LIPT P D+KLSK ETLRLA YI+ L VL
Sbjct: 8 NTRERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVL 58
>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
Length = 382
Score = 58.5 bits (140), Expect = 4e-09
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 24 EDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANAR 83
E+E+ + G DE R +G ++R + R R +R ANAR
Sbjct: 82 EEEEEEEEEEGLDE----AEGERPKKRGPKKRKMTK--------ARLERSKLRRQKANAR 129
Query: 84 ERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
ER+R + +N A LR ++P +KLSKIETLRLA +YI L +L +G+
Sbjct: 130 ERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGK 181
>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
Length = 331
Score = 57.8 bits (138), Expect = 6e-09
Identities = 31/56 (55%), Positives = 37/56 (66%)
Query: 76 QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
+R N+RER R +VN AF LR LIPT P D+KLSK E LRLA YI+ L +L
Sbjct: 188 RRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKLL 243
>gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]
Length = 271
Score = 57.0 bits (136), Expect = 1e-08
Identities = 62/179 (34%), Positives = 71/179 (39%), Gaps = 30/179 (16%)
Query: 6 LRPAPPGR------------YLYPEVSPLSEDEDRGSDSSGSDEKPCRVHAARCGLQGAR 53
LRP PG Y P S S S SS S P AAR +
Sbjct: 18 LRPQRPGDLQLGASLYELVGYRQPPSSSSSSTSSTSSTSSSSTTAPLLPKAAREKPEAPA 77
Query: 54 RRAGGRRAGGGGPGG--RPGREPRQ----RHTANARERDRTNSVNTAFTALRTLIPTEPA 107
G G PGG RP + Q R N+RER R +N A ALR +I A
Sbjct: 78 EPPGPGPGSGAHPGGSARPDAKEEQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSA 137
Query: 108 -------DRKLSKIETLRLASSYISHLGNVLL-AGEACGDGQPCHSGPAFFHAARAGSP 158
RKLSKI TL LA +YI LG+ L A G+G +GPA AG P
Sbjct: 138 AHCQGAPGRKLSKIATLLLARNYILLLGSSLQELRRALGEG----AGPAAPRLLLAGLP 192
>gi|121114306 neurogenic differentiation 1 [Homo sapiens]
Length = 356
Score = 56.2 bits (134), Expect = 2e-08
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 76 QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
+R ANARER+R + +N A LR ++P +KLSKIETLRLA +YI L +L +G+
Sbjct: 102 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGK 161
Query: 136 A 136
+
Sbjct: 162 S 162
>gi|27475985 neurogenic differentiation 6 [Homo sapiens]
Length = 337
Score = 55.5 bits (132), Expect = 3e-08
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 76 QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
+R ANARER+R + +N A LR ++P +KLSKIETLRLA +YI L +L G+
Sbjct: 95 RRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGK 154
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,632,405
Number of Sequences: 37866
Number of extensions: 745796
Number of successful extensions: 17931
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 251
Number of HSP's that attempted gapping in prelim test: 11463
Number of HSP's gapped (non-prelim): 4530
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.