Guide to the Human Genome
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Name: NEUROG3 Sequence: fasta or formatted (214aa) NCBI GI: 68989258
Description:

neurogenin 3

Referenced in:

Neurons
Helix-Loop-Helix Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         23           2
 C cysteine            2.3          5           1
 D aspartate           3.7          8           2
 E glutamate           6.5         14           2
 F phenylalanine       2.8          6           1
 G glycine             8.4         18           2
 H histidine           1.9          4           1
 I isoleucine          1.4          3           1
 K lysine              3.3          7           2
 L leucine            10.3         22           2
 M methionine          0.9          2           1
 N asparagine          2.8          6           1
 P proline             9.8         21           2
 Q glutamine           2.3          5           1
 R arginine           10.7         23           2
 S serine             10.7         23           1
 T threonine           6.5         14           1
 V valine              2.3          5           1
 W tryptophan          0.9          2           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neurogenin 3 
NEUROG1               0.286   neurogenin 1 
NEUROG2               0.248   neurogenin 2 
NEUROD6               0.150   neurogenic differentiation 6 
NEUROD2               0.148   neurogenic differentiation 2 
NEUROD1               0.138   neurogenic differentiation 1 
NEUROD4               0.133   neurogenic differentiation 4 
BHLHA15               0.124   basic helix-loop-helix family, member a15 
ATOH1                 0.119   atonal homolog 1 
ATOH7                 0.109   atonal homolog 7 
OLIG3                 0.102   oligodendrocyte transcription factor 3 
SCXB                  0.095   scleraxis homolog B 
SCXA                  0.095   scleraxis homolog A 
TCF15                 0.095   basic helix-loop-helix transcription factor 15 [Homo...
BHLHE23               0.087   basic helix-loop-helix domain containing, class B, 4...
PTF1A                 0.085   pancreas specific transcription factor, 1a 
BHLHE22               0.085   basic helix-loop-helix domain containing, class B, 5...
MSC                   0.085   musculin 
ASCL2                 0.085   achaete-scute complex homolog-like 2 
TWIST2                0.080   twist homolog 2 
MESP2                 0.080   mesoderm posterior 2 homolog 
FERD3L                0.080   nephew of atonal 3 
TWIST1                0.078   twist 
OLIG1                 0.078   oligodendrocyte transcription factor 1 
TCF21                 0.075   transcription factor 21 
TCF21                 0.075   transcription factor 21 
LYL1                  0.073   lymphoblastic leukemia derived sequence 1 
ATOH8                 0.073   atonal homolog 8 
OLIG2                 0.073   oligodendrocyte lineage transcription factor 2 [Homo...
MESP1                 0.073   mesoderm posterior 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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