Guide to the Human Genome
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Name: NEUROG2 Sequence: fasta or formatted (272aa) NCBI GI: 31077092
Description:

neurogenin 2

Referenced in:

Neurons
Helix-Loop-Helix Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.6         37           2
 C cysteine            2.2          6           1
 D aspartate           4.0         11           1
 E glutamate           7.4         20           6
 F phenylalanine       1.5          4           1
 G glycine             8.8         24           6
 H histidine           2.2          6           1
 I isoleucine          1.8          5           1
 K lysine              3.7         10           2
 L leucine            10.3         28           2
 M methionine          1.1          3           1
 N asparagine          2.9          8           2
 P proline             8.1         22           4
 Q glutamine           1.5          4           1
 R arginine            8.1         22           2
 S serine             11.4         31           3
 T threonine           5.1         14           1
 V valine              3.7         10           1
 W tryptophan          1.1          3           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neurogenin 2 
NEUROG1               0.202   neurogenin 1 
NEUROG3               0.196   neurogenin 3 
NEUROD2               0.117   neurogenic differentiation 2 
NEUROD1               0.117   neurogenic differentiation 1 
NEUROD6               0.109   neurogenic differentiation 6 
NEUROD4               0.106   neurogenic differentiation 4 
ATOH1                 0.104   atonal homolog 1 
OLIG3                 0.090   oligodendrocyte transcription factor 3 
PTF1A                 0.090   pancreas specific transcription factor, 1a 
TWIST1                0.088   twist 
BHLHA15               0.088   basic helix-loop-helix family, member a15 
OLIG2                 0.081   oligodendrocyte lineage transcription factor 2 [Homo...
MSC                   0.077   musculin 
ATOH7                 0.075   atonal homolog 7 
TAL1                  0.073   T-cell acute lymphocytic leukemia 1 
TCF15                 0.073   basic helix-loop-helix transcription factor 15 [Homo...
SCXB                  0.073   scleraxis homolog B 
SCXA                  0.073   scleraxis homolog A 
BHLHE22               0.073   basic helix-loop-helix domain containing, class B, 5...
ATOH8                 0.071   atonal homolog 8 
BHLHE23               0.067   basic helix-loop-helix domain containing, class B, 4...
ASCL2                 0.067   achaete-scute complex homolog-like 2 
LYL1                  0.067   lymphoblastic leukemia derived sequence 1 
TWIST2                0.065   twist homolog 2 
FERD3L                0.063   nephew of atonal 3 
TAL2                  0.058   T-cell acute lymphocytic leukemia 2 
HAND2                 0.058   basic helix-loop-helix transcription factor HAND2 [H...
OLIG1                 0.058   oligodendrocyte transcription factor 1 
NHLH1                 0.058   nescient helix loop helix 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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