Guide to the Human Genome
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Name: TCF21 Sequence: fasta or formatted (179aa) NCBI GI: 38202237
Description:

transcription factor 21

Referenced in:

Helix-Loop-Helix Transcription Factors

Other entries for this name:
alt mRNA [179aa] transcription factor 21
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         12           2
 C cysteine            1.7          3           1
 D aspartate           4.5          8           1
 E glutamate           7.8         14           2
 F phenylalanine       1.7          3           1
 G glycine             6.7         12           2
 H histidine           1.1          2           1
 I isoleucine          1.7          3           1
 K lysine              8.4         15           2
 L leucine            10.1         18           1
 M methionine          2.8          5           1
 N asparagine          5.0          9           1
 P proline             5.0          9           2
 Q glutamine           3.4          6           1
 R arginine            6.7         12           2
 S serine             11.2         20           2
 T threonine           6.7         12           2
 V valine              6.1         11           2
 W tryptophan          1.1          2           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor 21 
TCF21                 1.000   transcription factor 21 
MSC                   0.506   musculin 
LOC100129654          0.148   PREDICTED: similar to transcription factor 23 [Homo...
LOC100129654          0.148   PREDICTED: similar to transcription factor 23 [Homo...
TCF15                 0.142   basic helix-loop-helix transcription factor 15 [Homo...
LOC100129654          0.142   PREDICTED: similar to transcription factor 23 [Homo...
TWIST2                0.133   twist homolog 2 
SCXB                  0.133   scleraxis homolog B 
SCXA                  0.133   scleraxis homolog A 
TCF23                 0.130   transcription factor 23 
HAND2                 0.120   basic helix-loop-helix transcription factor HAND2 [H...
TWIST1                0.117   twist 
NEUROD1               0.105   neurogenic differentiation 1 
NHLH1                 0.102   nescient helix loop helix 1 
HAND1                 0.102   basic helix-loop-helix transcription factor HAND1 [Ho...
TAL1                  0.102   T-cell acute lymphocytic leukemia 1 
NEUROD6               0.102   neurogenic differentiation 6 
NEUROD4               0.099   neurogenic differentiation 4 
NEUROD2               0.096   neurogenic differentiation 2 
NEUROG3               0.093   neurogenin 3 
ATOH1                 0.093   atonal homolog 1 
PTF1A                 0.093   pancreas specific transcription factor, 1a 
ATOH7                 0.093   atonal homolog 7 
NHLH2                 0.090   nescient helix loop helix 2 
NHLH2                 0.090   nescient helix loop helix 2 
NEUROG2               0.084   neurogenin 2 
BHLHA15               0.081   basic helix-loop-helix family, member a15 
FERD3L                0.081   nephew of atonal 3 
FIGLA                 0.081   factor in the germline alpha 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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