Guide to the Human Genome
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Name: TBX4 Sequence: fasta or formatted (545aa) NCBI GI: 18129690
Description:

T-box 4

Referenced in:

T Box Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         44           5
 C cysteine            1.5          8           1
 D aspartate           4.0         22           2
 E glutamate           5.5         30           2
 F phenylalanine       3.9         21           1
 G glycine             6.4         35           1
 H histidine           4.0         22           1
 I isoleucine          3.1         17           2
 K lysine              4.8         26           2
 L leucine             8.1         44           2
 M methionine          2.9         16           2
 N asparagine          3.7         20           2
 P proline             9.5         52           4
 Q glutamine           5.1         28           2
 R arginine            4.8         26           2
 S serine              9.9         54           2
 T threonine           5.5         30           2
 V valine              4.6         25           2
 W tryptophan          0.9          5           1
 Y tyrosine            3.7         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-box 4 
TBX5                  0.445   T-box 5 isoform 1 
TBX5                  0.445   T-box 5 isoform 1 
TBX5                  0.437   T-box 5 isoform 3 
TBX5                  0.371   T-box 5 isoform 2 
TBX2                  0.219   T-box 2 
TBX1                  0.214   T-box 1 isoform C 
TBX1                  0.210   T-box 1 isoform B 
TBX1                  0.210   T-box 1 isoform A 
TBX3                  0.205   T-box 3 protein isoform 1 
TBX6                  0.198   T-box 6 
TBX10                 0.196   T-box 10 
TBX20                 0.195   T-box transcription factor TBX20 
TBX3                  0.194   T-box 3 protein isoform 2 
TBX18                 0.188   T-box 18 
TBX15                 0.182   T-box 15 
TBX22                 0.169   T-box 22 isoform 1 
TBX22                 0.169   T-box 22 isoform 1 
TBX21                 0.167   T-box 21 
MGA                   0.165   MAX gene associated 
T                     0.162   transcription factor T 
EOMES                 0.154   eomesodermin 
TBR1                  0.151   T-box, brain, 1 
TBX19                 0.150   T-box 19 
TBX22                 0.126   T-box 22 isoform 2 
AATK                  0.011   apoptosis-associated tyrosine kinase 
BTBD2                 0.010   BTB (POZ) domain containing 2 
EMILIN1               0.009   elastin microfibril interfacer 1 
SON                   0.008   SON DNA-binding protein isoform F 
SON                   0.008   SON DNA-binding protein isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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