Guide to the Human Genome
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Name: TBX22 Sequence: fasta or formatted (520aa) NCBI GI: 18375603
Description:

T-box 22 isoform 1

Referenced in:

T Box Family

Other entries for this name:
alt mRNA [520aa] T-box 22 isoform 1
alt prot [400aa] T-box 22 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         22           2
 C cysteine            1.7          9           1
 D aspartate           4.2         22           2
 E glutamate           6.2         32           5
 F phenylalanine       4.0         21           1
 G glycine             6.7         35           2
 H histidine           2.7         14           1
 I isoleucine          4.0         21           2
 K lysine              5.4         28           2
 L leucine             8.3         43           2
 M methionine          3.1         16           2
 N asparagine          4.2         22           2
 P proline             7.7         40           1
 Q glutamine           5.0         26           3
 R arginine            4.8         25           2
 S serine             13.3         69           2
 T threonine           4.8         25           2
 V valine              5.0         26           2
 W tryptophan          1.2          6           1
 Y tyrosine            3.5         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-box 22 isoform 1 
TBX22                 1.000   T-box 22 isoform 1 
TBX22                 0.776   T-box 22 isoform 2 
TBX15                 0.337   T-box 15 
TBX18                 0.316   T-box 18 
TBX20                 0.218   T-box transcription factor TBX20 
TBX1                  0.196   T-box 1 isoform B 
TBX1                  0.191   T-box 1 isoform C 
TBX1                  0.191   T-box 1 isoform A 
TBX10                 0.186   T-box 10 
TBX6                  0.181   T-box 6 
TBX4                  0.179   T-box 4 
TBX2                  0.177   T-box 2 
TBX3                  0.172   T-box 3 protein isoform 1 
TBX5                  0.169   T-box 5 isoform 2 
TBX5                  0.169   T-box 5 isoform 1 
TBX5                  0.169   T-box 5 isoform 1 
TBX5                  0.167   T-box 5 isoform 3 
TBX3                  0.162   T-box 3 protein isoform 2 
MGA                   0.155   MAX gene associated 
TBX19                 0.145   T-box 19 
EOMES                 0.144   eomesodermin 
TBR1                  0.143   T-box, brain, 1 
TBX21                 0.139   T-box 21 
T                     0.137   transcription factor T 
ITIH5L                0.011   inter-alpha (globulin) inhibitor H5-like 
NOLC1                 0.011   nucleolar and coiled-body phosphoprotein 1 
NUP153                0.011   nucleoporin 153kDa 
LOC285556             0.010   PREDICTED: hypothetical protein LOC285556 
LOC285556             0.010   PREDICTED: hypothetical protein LOC285556 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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