Guide to the Human Genome
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Name: TBX20 Sequence: fasta or formatted (447aa) NCBI GI: 117676399
Description:

T-box transcription factor TBX20

Referenced in:

T Box Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         29           2
 C cysteine            0.7          3           1
 D aspartate           3.4         15           1
 E glutamate           6.3         28           2
 F phenylalanine       4.9         22           1
 G glycine             6.0         27           3
 H histidine           3.6         16           2
 I isoleucine          5.8         26           2
 K lysine              5.4         24           3
 L leucine             8.1         36           2
 M methionine          2.7         12           1
 N asparagine          2.5         11           2
 P proline             8.1         36           2
 Q glutamine           4.0         18           2
 R arginine            4.3         19           2
 S serine             13.2         59           5
 T threonine           7.2         32           2
 V valine              4.0         18           1
 W tryptophan          0.7          3           1
 Y tyrosine            2.9         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-box transcription factor TBX20 
TBX18                 0.290   T-box 18 
TBX15                 0.290   T-box 15 
TBX1                  0.266   T-box 1 isoform A 
TBX1                  0.265   T-box 1 isoform B 
TBX1                  0.265   T-box 1 isoform C 
TBX22                 0.259   T-box 22 isoform 1 
TBX22                 0.259   T-box 22 isoform 1 
TBX2                  0.256   T-box 2 
TBX3                  0.256   T-box 3 protein isoform 1 
TBX10                 0.251   T-box 10 
TBX5                  0.248   T-box 5 isoform 2 
TBX5                  0.248   T-box 5 isoform 1 
TBX5                  0.248   T-box 5 isoform 1 
TBX5                  0.247   T-box 5 isoform 3 
TBX4                  0.245   T-box 4 
TBX3                  0.242   T-box 3 protein isoform 2 
TBX6                  0.237   T-box 6 
TBX22                 0.203   T-box 22 isoform 2 
MGA                   0.196   MAX gene associated 
T                     0.185   transcription factor T 
TBX19                 0.174   T-box 19 
TBX21                 0.167   T-box 21 
EOMES                 0.167   eomesodermin 
TBR1                  0.165   T-box, brain, 1 
MUC16                 0.016   mucin 16 
SETD1A                0.014   SET domain containing 1A 
MUC17                 0.013   mucin 17 
TCERG1                0.013   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.013   transcription elongation regulator 1 isoform 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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