Guide to the Human Genome
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Name: TBX19 Sequence: fasta or formatted (448aa) NCBI GI: 4827024
Description:

T-box 19

Referenced in:

T Box Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         33           2
 C cysteine            1.1          5           1
 D aspartate           2.7         12           1
 E glutamate           4.9         22           2
 F phenylalanine       2.9         13           1
 G glycine             8.7         39           3
 H histidine           5.4         24           2
 I isoleucine          4.0         18           2
 K lysine              3.8         17           1
 L leucine             7.6         34           3
 M methionine          2.0          9           1
 N asparagine          5.4         24           2
 P proline             9.6         43           2
 Q glutamine           2.9         13           1
 R arginine            2.9         13           2
 S serine             11.2         50           3
 T threonine           5.8         26           1
 V valine              6.9         31           2
 W tryptophan          2.0          9           1
 Y tyrosine            2.9         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-box 19 
T                     0.482   transcription factor T 
TBX5                  0.186   T-box 5 isoform 3 
TBX5                  0.186   T-box 5 isoform 1 
TBX5                  0.186   T-box 5 isoform 1 
TBX5                  0.186   T-box 5 isoform 2 
TBR1                  0.186   T-box, brain, 1 
TBX6                  0.183   T-box 6 
TBX4                  0.181   T-box 4 
TBX21                 0.178   T-box 21 
TBX18                 0.171   T-box 18 
TBX2                  0.169   T-box 2 
TBX20                 0.167   T-box transcription factor TBX20 
TBX22                 0.165   T-box 22 isoform 1 
TBX22                 0.165   T-box 22 isoform 1 
TBX15                 0.164   T-box 15 
TBX10                 0.161   T-box 10 
EOMES                 0.160   eomesodermin 
TBX3                  0.159   T-box 3 protein isoform 1 
TBX1                  0.158   T-box 1 isoform B 
TBX1                  0.158   T-box 1 isoform C 
TBX1                  0.158   T-box 1 isoform A 
MGA                   0.158   MAX gene associated 
TBX3                  0.155   T-box 3 protein isoform 2 
TBX22                 0.126   T-box 22 isoform 2 
COL10A1               0.016   type X collagen alpha 1 precursor 
SEC16A                0.015   SEC16 homolog A 
CNOT3                 0.015   CCR4-NOT transcription complex, subunit 3 
ATF2                  0.013   activating transcription factor 2 
SHANK1                0.013   SH3 and multiple ankyrin repeat domains 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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