Guide to the Human Genome
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Name: RPL21 Sequence: fasta or formatted (160aa) NCBI GI: 18104948
Description:

ribosomal protein L21

Referenced in:

Ribosomes
Small RNAs in RNA Processing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4          7           1
 C cysteine            0.6          1           1
 D aspartate           2.5          4           1
 E glutamate           5.6          9           1
 F phenylalanine       3.1          5           1
 G glycine             8.1         13           1
 H histidine           4.4          7           1
 I isoleucine          5.6          9           1
 K lysine             15.0         24           3
 L leucine             3.8          6           2
 M methionine          3.8          6           1
 N asparagine          3.8          6           1
 P proline             5.6          9           2
 Q glutamine           3.8          6           1
 R arginine            8.8         14           2
 S serine              2.5          4           1
 T threonine           5.6          9           1
 V valine              8.8         14           2
 W tryptophan          0.6          1           1
 Y tyrosine            3.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal protein L21 
ARHGEF12              0.023   Rho guanine nucleotide exchange factor (GEF) 12 [Homo...
OSBPL1A               0.023   oxysterol-binding protein-like 1A isoform A 
OSBPL1A               0.023   oxysterol-binding protein-like 1A isoform B 
MAP1B                 0.023   microtubule-associated protein 1B 
TAF3                  0.020   RNA polymerase II transcription factor TAFII140 [Ho...
THOC2                 0.016   THO complex 2 
R3HDM1                0.016   R3H domain containing 1 
LOC100294088          0.013   PREDICTED: hypothetical protein, partial 
WHAMM                 0.013   WAS protein homolog associated with actin, golgi me...
UBN1                  0.013   ubinuclein 1 
UBN1                  0.013   ubinuclein 1 
NHP2                  0.013   nucleolar protein family A, member 2 isoform b [Homo...
GOLGA4                0.013   golgi autoantigen, golgin subfamily a, 4 
PLCB4                 0.010   phospholipase C beta 4 isoform a 
AP3D1                 0.010   adaptor-related protein complex 3, delta 1 subunit ...
PLCB4                 0.010   phospholipase C beta 4 isoform b 
CARD9                 0.010   caspase recruitment domain protein 9 isoform 2 [Homo...
CARD9                 0.010   caspase recruitment domain protein 9 isoform 1 [Homo...
FZD3                  0.010   frizzled 3 
ARL6IP4               0.010   SRp25 nuclear protein isoform 4 
ARL6IP4               0.010   SRp25 nuclear protein isoform 3 
ARL6IP4               0.010   SRp25 nuclear protein isoform 2 
ARL6IP4               0.010   SRp25 nuclear protein isoform 1 
C10orf92              0.007   hypothetical protein LOC54777 
SPTB                  0.007   spectrin beta isoform a 
MRVI1                 0.007   JAW1-related protein isoform a 
MRVI1                 0.007   JAW1-related protein isoform c 
MRVI1                 0.007   JAW1-related protein isoform b 
MRVI1                 0.007   JAW1-related protein isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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