Guide to the Human Genome
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Name: CARD9 Sequence: fasta or formatted (536aa) NCBI GI: 47717131
Description:

caspase recruitment domain protein 9 isoform 1

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Other entries for this name:
alt prot [492aa] caspase recruitment domain protein 9 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         33           2
 C cysteine            1.7          9           1
 D aspartate           6.7         36           2
 E glutamate          11.9         64           2
 F phenylalanine       1.7          9           1
 G glycine             4.7         25           3
 H histidine           2.1         11           1
 I isoleucine          2.6         14           2
 K lysine              7.5         40           2
 L leucine            13.8         74           2
 M methionine          2.4         13           1
 N asparagine          1.9         10           1
 P proline             2.8         15           2
 Q glutamine           8.2         44           2
 R arginine            9.3         50           3
 S serine              6.2         33           2
 T threonine           3.2         17           2
 V valine              4.7         25           1
 W tryptophan          0.7          4           1
 Y tyrosine            1.9         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   caspase recruitment domain protein 9 isoform 1 [Homo... 
CARD9                 0.892   caspase recruitment domain protein 9 isoform 2 [Homo...
CARD11                0.336   caspase recruitment domain family, member 11 
CARD10                0.253   caspase recruitment domain protein 10 
CARD14                0.151   caspase recruitment domain protein 14 isoform 1 [Hom...
CARD14                0.053   caspase recruitment domain protein 14 isoform 2 [Hom...
LOC727832             0.048   golgi autoantigen, golgin subfamily a-like 
LOC283767             0.046   golgi autoantigen, golgin subfamily a-like 
LOC440243             0.046   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC283685             0.042   PREDICTED: golgi autoantigen, golgin subfamily a-li...
FYCO1                 0.042   FYVE and coiled-coil domain containing 1 
NUMA1                 0.041   nuclear mitotic apparatus protein 1 
PLEC1                 0.041   plectin 1 isoform 11 
PLEC1                 0.041   plectin 1 isoform 10 
PLEC1                 0.041   plectin 1 isoform 8 
PLEC1                 0.041   plectin 1 isoform 7 
PLEC1                 0.041   plectin 1 isoform 6 
PLEC1                 0.041   plectin 1 isoform 3 
PLEC1                 0.041   plectin 1 isoform 2 
PLEC1                 0.041   plectin 1 isoform 1 
TCHH                  0.041   trichohyalin 
PMFBP1                0.039   polyamine modulated factor 1 binding protein 1 isof...
PMFBP1                0.039   polyamine modulated factor 1 binding protein 1 isof...
CGNL1                 0.039   cingulin-like 1 
MYH9                  0.039   myosin, heavy polypeptide 9, non-muscle 
ROCK1                 0.039   Rho-associated, coiled-coil containing protein kinase...
MYH3                  0.039   myosin, heavy chain 3, skeletal muscle, embryonic [H...
GOLGB1                0.038   golgi autoantigen, golgin subfamily b, macrogolgin ...
MYH10                 0.038   myosin, heavy polypeptide 10, non-muscle 
GCC2                  0.038   GRIP and coiled-coil domain-containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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