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Search of human proteins with 18087829
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18087829 zinc finger CCCH-type, antiviral 1-like [Homo
sapiens]
(300 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18087829 zinc finger CCCH-type, antiviral 1-like [Homo sapiens] 622 e-178
gi|27477136 zinc finger antiviral protein isoform 1 [Homo sapiens] 179 3e-45
gi|27477138 zinc finger antiviral protein isoform 2 [Homo sapiens] 179 3e-45
gi|12232413 poly ADP-ribose polymerase 12 [Homo sapiens] 138 7e-33
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 36 0.047
gi|46411170 muscleblind-like 1 isoform e [Homo sapiens] 34 0.14
gi|46411168 muscleblind-like 1 isoform d [Homo sapiens] 34 0.14
gi|39995084 integrator complex subunit 3 [Homo sapiens] 32 0.89
gi|125987603 cleavage and polyadenylation specific factor 4, 30k... 30 2.0
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 30 2.0
gi|148612831 kinesin family member 18A [Homo sapiens] 30 2.6
gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo ... 30 3.4
gi|239745140 PREDICTED: similar to hect domain and RLD 2 [Homo s... 29 4.4
gi|46411180 muscleblind-like 2 isoform 3 [Homo sapiens] 29 4.4
gi|21464125 muscleblind-like 2 isoform 1 [Homo sapiens] 29 4.4
gi|46411174 muscleblind-like 1 isoform g [Homo sapiens] 29 4.4
gi|46411172 muscleblind-like 1 isoform f [Homo sapiens] 29 4.4
gi|46411166 muscleblind-like 1 isoform c [Homo sapiens] 29 4.4
gi|46411164 muscleblind-like 1 isoform b [Homo sapiens] 29 4.4
gi|41281591 muscleblind-like 1 isoform a [Homo sapiens] 29 4.4
gi|113425145 PREDICTED: similar to Golgin subfamily A member 8-l... 29 5.8
gi|113425137 PREDICTED: similar to Golgin subfamily A member 8-l... 29 5.8
gi|113425121 PREDICTED: similar to Golgin subfamily A member 8-l... 29 5.8
gi|113425119 PREDICTED: similar to golgi autoantigen, golgin sub... 29 5.8
gi|239745099 PREDICTED: similar to Golgin subfamily A member 8-l... 29 5.8
gi|157671949 rearranged L-myc fusion [Homo sapiens] 29 5.8
gi|130502140 NEZHA isoform 2 [Homo sapiens] 28 7.6
gi|122937255 NEZHA isoform 1 [Homo sapiens] 28 7.6
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 28 7.6
gi|30315649 muscleblind-like 3 isoform R [Homo sapiens] 28 7.6
>gi|18087829 zinc finger CCCH-type, antiviral 1-like [Homo sapiens]
Length = 300
Score = 622 bits (1604), Expect = e-178
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MAEPTVCSFLTKVLCAHGGRMFLKDLRGHVELSEARLRDVLQRAGPERFLLQEVETQEGL 60
MAEPTVCSFLTKVLCAHGGRMFLKDLRGHVELSEARLRDVLQRAGPERFLLQEVETQEGL
Sbjct: 1 MAEPTVCSFLTKVLCAHGGRMFLKDLRGHVELSEARLRDVLQRAGPERFLLQEVETQEGL 60
Query: 61 GDAEAEAAAGAVGGGGTSAWRVVAVSSVRLCARYQRGECQACDQLHFCRRHMLGKCPNRD 120
GDAEAEAAAGAVGGGGTSAWRVVAVSSVRLCARYQRGECQACDQLHFCRRHMLGKCPNRD
Sbjct: 61 GDAEAEAAAGAVGGGGTSAWRVVAVSSVRLCARYQRGECQACDQLHFCRRHMLGKCPNRD 120
Query: 121 CWSTCTLSHDIHTPVNMQVLKSHGLFGLNENQLRILLLQNDPCLLPEVCLLYNKGEALYG 180
CWSTCTLSHDIHTPVNMQVLKSHGLFGLNENQLRILLLQNDPCLLPEVCLLYNKGEALYG
Sbjct: 121 CWSTCTLSHDIHTPVNMQVLKSHGLFGLNENQLRILLLQNDPCLLPEVCLLYNKGEALYG 180
Query: 181 YCNLKDKCNKFHVCKSFVKGECKLQTCKRSHQLIHAASLKLLQDQGLNIPSVVNFQIIST 240
YCNLKDKCNKFHVCKSFVKGECKLQTCKRSHQLIHAASLKLLQDQGLNIPSVVNFQIIST
Sbjct: 181 YCNLKDKCNKFHVCKSFVKGECKLQTCKRSHQLIHAASLKLLQDQGLNIPSVVNFQIIST 240
Query: 241 YKHIKLHKMLENTDNSSPSTEHSQGLEKQGVHAAGAAEAGPLASVPAQSAKKPCPVSCEK 300
YKHIKLHKMLENTDNSSPSTEHSQGLEKQGVHAAGAAEAGPLASVPAQSAKKPCPVSCEK
Sbjct: 241 YKHIKLHKMLENTDNSSPSTEHSQGLEKQGVHAAGAAEAGPLASVPAQSAKKPCPVSCEK 300
>gi|27477136 zinc finger antiviral protein isoform 1 [Homo sapiens]
Length = 902
Score = 179 bits (454), Expect = 3e-45
Identities = 98/247 (39%), Positives = 141/247 (57%), Gaps = 24/247 (9%)
Query: 1 MAEPTVCSFLTKVLCAHGGRMFLKDLRGHVELSEARLRDVLQRAGPERFLLQEVETQEGL 60
MA+P VC F+TK+LCAHGGRM L L + LSE +L +VLQ AGP+RF++ E
Sbjct: 1 MADPEVCCFITKILCAHGGRMALDALLQEIALSEPQLCEVLQVAGPDRFVVLE------- 53
Query: 61 GDAEAEAAAGAVGGGGTSAWRVVAVSSVRLCARYQRGECQ-ACDQLHFCRRHMLGKCP-N 118
GG VVA + R+C +R CQ CD LH C+ ++LG+C +
Sbjct: 54 -----------TGGEAGITRSVVATTRARVC---RRKYCQRPCDNLHLCKLNLLGRCNYS 99
Query: 119 RDCWSTCTLSHDIHTPVNMQVLKSHGLFGLNENQLRILLLQNDPCLLPEVCLLYNKGEAL 178
+ + C SH++ + N +VLK+H L GLN+ +L +LLLQ+DP +PE+C Y KGE
Sbjct: 100 QSERNLCKYSHEVLSEENFKVLKNHELSGLNKEELAVLLLQSDPFFMPEICKSY-KGEGR 158
Query: 179 YGYCNLKDKCNKFHVCKSFVKGECKLQTCKRSHQLIHAASLKLLQDQGLNIPSVVNFQII 238
CN + C++ H+C F +G C+ C RSH L+ L ++++ GLN V N Q I
Sbjct: 159 QQICNQQPPCSRLHICDHFTRGNCRFPNCLRSHNLMDRKVLAIMREHGLNPDVVQNIQDI 218
Query: 239 STYKHIK 245
KH++
Sbjct: 219 CNSKHMQ 225
>gi|27477138 zinc finger antiviral protein isoform 2 [Homo sapiens]
Length = 699
Score = 179 bits (454), Expect = 3e-45
Identities = 98/247 (39%), Positives = 141/247 (57%), Gaps = 24/247 (9%)
Query: 1 MAEPTVCSFLTKVLCAHGGRMFLKDLRGHVELSEARLRDVLQRAGPERFLLQEVETQEGL 60
MA+P VC F+TK+LCAHGGRM L L + LSE +L +VLQ AGP+RF++ E
Sbjct: 1 MADPEVCCFITKILCAHGGRMALDALLQEIALSEPQLCEVLQVAGPDRFVVLE------- 53
Query: 61 GDAEAEAAAGAVGGGGTSAWRVVAVSSVRLCARYQRGECQ-ACDQLHFCRRHMLGKCP-N 118
GG VVA + R+C +R CQ CD LH C+ ++LG+C +
Sbjct: 54 -----------TGGEAGITRSVVATTRARVC---RRKYCQRPCDNLHLCKLNLLGRCNYS 99
Query: 119 RDCWSTCTLSHDIHTPVNMQVLKSHGLFGLNENQLRILLLQNDPCLLPEVCLLYNKGEAL 178
+ + C SH++ + N +VLK+H L GLN+ +L +LLLQ+DP +PE+C Y KGE
Sbjct: 100 QSERNLCKYSHEVLSEENFKVLKNHELSGLNKEELAVLLLQSDPFFMPEICKSY-KGEGR 158
Query: 179 YGYCNLKDKCNKFHVCKSFVKGECKLQTCKRSHQLIHAASLKLLQDQGLNIPSVVNFQII 238
CN + C++ H+C F +G C+ C RSH L+ L ++++ GLN V N Q I
Sbjct: 159 QQICNQQPPCSRLHICDHFTRGNCRFPNCLRSHNLMDRKVLAIMREHGLNPDVVQNIQDI 218
Query: 239 STYKHIK 245
KH++
Sbjct: 219 CNSKHMQ 225
>gi|12232413 poly ADP-ribose polymerase 12 [Homo sapiens]
Length = 701
Score = 138 bits (347), Expect = 7e-33
Identities = 92/248 (37%), Positives = 124/248 (50%), Gaps = 22/248 (8%)
Query: 1 MAEPTVCSFLTKVLCAHGGRMFLKDLRGHVELSEARLRDVLQRAGPERFLLQEVETQEGL 60
MA+ V +T+VLCA GG + L +LR RLR L ER L Q
Sbjct: 1 MAQAGVVGEVTQVLCAAGGALELPELR-------RRLRMGLSADALERLLRQRGRF---- 49
Query: 61 GDAEAEAAAGAVGGGGTSAWRVV-AVSSVRLCARYQR---GECQACDQLHFCRRHMLGKC 116
A GG + RVV A S +RLC +Q G C QLH CR + G C
Sbjct: 50 ------VVAVRAGGAAAAPERVVLAASPLRLCRAHQGSKPGCVGLCAQLHLCRFMVYGAC 103
Query: 117 PNRDCWSTCTLSHDIHTPVNMQVLKSHGLFGLNENQLRILLLQNDPCLLPEVCLLYNKGE 176
C SH + T N+ VL++HG+ L+ N+L LL QNDP LLPE+C YNKG+
Sbjct: 104 KFLRAGKNCRNSHSLTTEHNLSVLRTHGVDHLSYNELCQLLFQNDPWLLPEICQHYNKGD 163
Query: 177 ALYGYCNLKDKCNKFHVCKSFVKGECKLQT-CKRSHQLIHAASLKLLQDQGLNIPSVVNF 235
+G C + +C K H+C+ F++GECK T CKRSH ++ +L+ L+ G++ V
Sbjct: 164 GPHGSCAFQKQCIKLHICQYFLQGECKFGTSCKRSHDFSNSENLEKLEKLGMSSDLVSRL 223
Query: 236 QIISTYKH 243
I H
Sbjct: 224 PTIYRNAH 231
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 35.8 bits (81), Expect = 0.047
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 167 EVCLLYNKGEALYGYCNLKDKCNKFH------VCKSFVKGECKLQ--TCKRSHQL 213
E C+ YN+ +G CN ++C H VC FV+G CK TC SH +
Sbjct: 671 EYCMYYNR----FGRCNRGERCPYIHDPEKVAVCTRFVRGTCKKTDGTCPFSHHV 721
Score = 32.7 bits (73), Expect = 0.40
Identities = 39/131 (29%), Positives = 48/131 (36%), Gaps = 35/131 (26%)
Query: 91 CARYQR-GEC---QACDQLH------FCRRHMLGKCPNRDCWSTCTLSHDIHTPVNMQVL 140
C Y R G C + C +H C R + G C D TC SH H +
Sbjct: 673 CMYYNRFGRCNRGERCPYIHDPEKVAVCTRFVRGTCKKTD--GTCPFSH--HVSKEKMPV 728
Query: 141 KSHGLFGLNENQLRILLLQNDP------CLLPEVCLLYNKGEALYGYCNLKDKCNKFH-- 192
S+ L G+ N N P EVC + L GYC L KC K H
Sbjct: 729 CSYFLKGICSNS-------NCPYSHVYVSRKAEVC-----SDFLKGYCPLGAKCKKKHTL 776
Query: 193 VCKSFV-KGEC 202
+C F +G C
Sbjct: 777 LCPDFARRGAC 787
>gi|46411170 muscleblind-like 1 isoform e [Homo sapiens]
Length = 314
Score = 34.3 bits (77), Expect = 0.14
Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 36/173 (20%)
Query: 87 SVRLCARYQRGECQACD-----------------QLHFCRRHMLGKCPNRDCWSTCTLSH 129
++ +C +QRG C D ++ C + G+C +C H
Sbjct: 15 TLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRENCKYLHPPPH 74
Query: 130 -----DIHTPVNMQVLKSHGLFGLNENQLRILLLQNDPCLLPEVCLLYNKGEALYG---- 180
+I+ N+ K+ + + QL ++ P L P VC Y +G G
Sbjct: 75 LKTQLEINGRNNLIQQKNMAMLA-QQMQLANAMMPGAP-LQPVVCREYQRGNCNRGENDC 132
Query: 181 -YCNLKDKC------NKFHVCKSFVKGECKLQTCKRSHQLIH-AASLKLLQDQ 225
+ + D N VC ++KG C + CK H H A +K Q Q
Sbjct: 133 RFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQAKIKAAQYQ 185
>gi|46411168 muscleblind-like 1 isoform d [Homo sapiens]
Length = 302
Score = 34.3 bits (77), Expect = 0.14
Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 36/173 (20%)
Query: 87 SVRLCARYQRGECQACD-----------------QLHFCRRHMLGKCPNRDCWSTCTLSH 129
++ +C +QRG C D ++ C + G+C +C H
Sbjct: 15 TLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRENCKYLHPPPH 74
Query: 130 -----DIHTPVNMQVLKSHGLFGLNENQLRILLLQNDPCLLPEVCLLYNKGEALYG---- 180
+I+ N+ K+ + + QL ++ P L P VC Y +G G
Sbjct: 75 LKTQLEINGRNNLIQQKNMAMLA-QQMQLANAMMPGAP-LQPVVCREYQRGNCNRGENDC 132
Query: 181 -YCNLKDKC------NKFHVCKSFVKGECKLQTCKRSHQLIH-AASLKLLQDQ 225
+ + D N VC ++KG C + CK H H A +K Q Q
Sbjct: 133 RFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQAKIKAAQYQ 185
>gi|39995084 integrator complex subunit 3 [Homo sapiens]
Length = 1042
Score = 31.6 bits (70), Expect = 0.89
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 54 VETQEGLGDAEAEAAAGAVGGGGTSA 79
+E Q+G G A A AA+GA GGGG A
Sbjct: 1 MELQKGKGAAAAAAASGAAGGGGGGA 26
>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Homo sapiens]
Length = 244
Score = 30.4 bits (67), Expect = 2.0
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 71 AVGGGGTSAWRVVAVSSVRLCARYQRGECQACDQLHFCRRH------------MLGKCPN 118
A G GG +R ++ +C + RG C+ DQ F + G+C N
Sbjct: 48 ACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSN 107
Query: 119 RDC 121
++C
Sbjct: 108 KEC 110
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 30.4 bits (67), Expect = 2.0
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 71 AVGGGGTSAWRVVAVSSVRLCARYQRGECQACDQLHFCRRH------------MLGKCPN 118
A G GG +R ++ +C + RG C+ DQ F + G+C N
Sbjct: 48 ACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSN 107
Query: 119 RDC 121
++C
Sbjct: 108 KEC 110
>gi|148612831 kinesin family member 18A [Homo sapiens]
Length = 898
Score = 30.0 bits (66), Expect = 2.6
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 158 LQNDPCL--LPEVCLLYNKGEALYGYCNLKDKCNKFHVCKSFVKGECKL-------QTCK 208
+ +D CL L EV + +N+ + C +D + F +C+ +CKL K
Sbjct: 739 INSDNCLKMLCEVAIPHNRRKE----CGQEDLDSTFTICEDIKSSKCKLPEQESLPNDNK 794
Query: 209 RSHQLIHAASLKLLQDQGLNIPSVVNFQIISTYKHIKLHKMLENTDNSSPSTEHSQGLEK 268
Q + +S + +PS+V + T + K+ +T NSS + + + G K
Sbjct: 795 DILQRLDPSSFST--KHSMPVPSMVPSYMAMTTAAKRKRKLTSSTSNSSLTADVNSGFAK 852
Query: 269 Q 269
+
Sbjct: 853 R 853
>gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo
sapiens]
Length = 609
Score = 29.6 bits (65), Expect = 3.4
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 31 ELSEARLRDVLQRAGPERFLLQEVETQEGLGDAEAEAAAGAVGGGGTSAWRVVAVSSVRL 90
E S AR+ +R G + Q + E LGD E GA GGG + R AV L
Sbjct: 518 EGSPARIAFSGRRGGAKA---QPMAEAESLGDRERRDGGGAAGGGAVAQLR--AVGQGAL 572
Query: 91 CA 92
CA
Sbjct: 573 CA 574
>gi|239745140 PREDICTED: similar to hect domain and RLD 2 [Homo
sapiens]
Length = 1052
Score = 29.3 bits (64), Expect = 4.4
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 248 KMLENTDNSSPSTEHSQGLEKQGVHAAGAAEAGPLASVPAQSAKKPC 294
K T+ S P T S G + G A G GP +S + + PC
Sbjct: 58 KRNRKTNGSIPETATSGGCQSPGDSATGIHGEGPTSSATLKDLESPC 104
>gi|46411180 muscleblind-like 2 isoform 3 [Homo sapiens]
Length = 361
Score = 29.3 bits (64), Expect = 4.4
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 189 NKFHVCKSFVKGECKLQTCKRSHQLIH-AASLKLLQDQ 225
N VC ++KG C + CK H H A +K Q Q
Sbjct: 213 NTVTVCMDYIKGRCMREKCKYFHPPAHLQAKIKAAQHQ 250
>gi|21464125 muscleblind-like 2 isoform 1 [Homo sapiens]
Length = 367
Score = 29.3 bits (64), Expect = 4.4
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 189 NKFHVCKSFVKGECKLQTCKRSHQLIH-AASLKLLQDQ 225
N VC ++KG C + CK H H A +K Q Q
Sbjct: 213 NTVTVCMDYIKGRCMREKCKYFHPPAHLQAKIKAAQHQ 250
>gi|46411174 muscleblind-like 1 isoform g [Homo sapiens]
Length = 342
Score = 29.3 bits (64), Expect = 4.4
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 167 EVCLLYNKGEALYG-----YCNLKDKC------NKFHVCKSFVKGECKLQTCKRSHQLIH 215
EVC Y +G G + + D N VC ++KG C + CK H H
Sbjct: 183 EVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAH 242
Query: 216 -AASLKLLQDQ 225
A +K Q Q
Sbjct: 243 LQAKIKAAQYQ 253
>gi|46411172 muscleblind-like 1 isoform f [Homo sapiens]
Length = 340
Score = 29.3 bits (64), Expect = 4.4
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 167 EVCLLYNKGEALYG-----YCNLKDKC------NKFHVCKSFVKGECKLQTCKRSHQLIH 215
EVC Y +G G + + D N VC ++KG C + CK H H
Sbjct: 183 EVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAH 242
Query: 216 -AASLKLLQDQ 225
A +K Q Q
Sbjct: 243 LQAKIKAAQYQ 253
>gi|46411166 muscleblind-like 1 isoform c [Homo sapiens]
Length = 388
Score = 29.3 bits (64), Expect = 4.4
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 167 EVCLLYNKGEALYG-----YCNLKDKC------NKFHVCKSFVKGECKLQTCKRSHQLIH 215
EVC Y +G G + + D N VC ++KG C + CK H H
Sbjct: 183 EVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAH 242
Query: 216 -AASLKLLQDQ 225
A +K Q Q
Sbjct: 243 LQAKIKAAQYQ 253
>gi|46411164 muscleblind-like 1 isoform b [Homo sapiens]
Length = 370
Score = 29.3 bits (64), Expect = 4.4
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 167 EVCLLYNKGEALYG-----YCNLKDKC------NKFHVCKSFVKGECKLQTCKRSHQLIH 215
EVC Y +G G + + D N VC ++KG C + CK H H
Sbjct: 183 EVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAH 242
Query: 216 -AASLKLLQDQ 225
A +K Q Q
Sbjct: 243 LQAKIKAAQYQ 253
>gi|41281591 muscleblind-like 1 isoform a [Homo sapiens]
Length = 382
Score = 29.3 bits (64), Expect = 4.4
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 167 EVCLLYNKGEALYG-----YCNLKDKC------NKFHVCKSFVKGECKLQTCKRSHQLIH 215
EVC Y +G G + + D N VC ++KG C + CK H H
Sbjct: 183 EVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAH 242
Query: 216 -AASLKLLQDQ 225
A +K Q Q
Sbjct: 243 LQAKIKAAQYQ 253
>gi|113425145 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 3 [Homo sapiens]
Length = 632
Score = 28.9 bits (63), Expect = 5.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 253 TDNSSPSTEHSQGLEKQGVHAAGAAEAGPLASVPAQSAKKPC 294
T+ S P T S G + G A G GP +S + + PC
Sbjct: 38 TNGSIPETATSGGCQPPGDSATGFHREGPTSSATLKDLESPC 79
>gi|113425137 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 3 [Homo sapiens]
Length = 632
Score = 28.9 bits (63), Expect = 5.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 253 TDNSSPSTEHSQGLEKQGVHAAGAAEAGPLASVPAQSAKKPC 294
T+ S P T S G + G A G GP +S + + PC
Sbjct: 38 TNGSIPETATSGGCQPPGDSATGFHREGPTSSATLKDLESPC 79
>gi|113425121 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 4 [Homo sapiens]
Length = 632
Score = 28.9 bits (63), Expect = 5.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 253 TDNSSPSTEHSQGLEKQGVHAAGAAEAGPLASVPAQSAKKPC 294
T+ S P T S G + G A G GP +S + + PC
Sbjct: 38 TNGSIPETATSGGCQPPGDSATGFHREGPTSSATLKDLESPC 79
>gi|113425119 PREDICTED: similar to golgi autoantigen, golgin
subfamily a, 8E isoform 2 [Homo sapiens]
Length = 631
Score = 28.9 bits (63), Expect = 5.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 253 TDNSSPSTEHSQGLEKQGVHAAGAAEAGPLASVPAQSAKKPC 294
T+ S P T S G + G A G GP +S + + PC
Sbjct: 38 TNGSIPETATSGGCQPPGDSATGFHREGPTSSATLKDLESPC 79
>gi|239745099 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 1 [Homo sapiens]
Length = 632
Score = 28.9 bits (63), Expect = 5.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 253 TDNSSPSTEHSQGLEKQGVHAAGAAEAGPLASVPAQSAKKPC 294
T+ S P T S G + G A G GP +S + + PC
Sbjct: 38 TNGSIPQTATSGGCQPPGDSATGFHREGPTSSATLKDLESPC 79
>gi|157671949 rearranged L-myc fusion [Homo sapiens]
Length = 1914
Score = 28.9 bits (63), Expect = 5.8
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 176 EALYGYCNLKDKCNKFHVCKSFVKGECKLQTCKRSH----------QLIHAASLKLLQDQ 225
E ++G +LK+KC+ VC K C C ++ + +H K + +
Sbjct: 930 EKVFGPSSLKEKCSSMAVCFDGTKFTCGFDGCGSTYKNARGMQKHLRKVHPYHFKPKKIK 989
Query: 226 GLNI-PSVVNFQIISTYKHIKLHKMLENTDNSSP--STEHSQGLEKQGVHAAGAAEAGPL 282
++ PS+ N +T K K +T++ SP +H+ ++ + H ++E+
Sbjct: 990 TKDLFPSLGNEHNQTTEKLDAEPKPCSDTNSDSPDEGLDHNIHIKCKREHQGYSSESSIC 1049
Query: 283 ASVPAQSAKKPC 294
AS K+PC
Sbjct: 1050 AS------KRPC 1055
>gi|130502140 NEZHA isoform 2 [Homo sapiens]
Length = 1249
Score = 28.5 bits (62), Expect = 7.6
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 23 LKDLRGHVELSEARLRDVL----QRAGPERFLLQEVETQEGLGDAEAEAA---AGAVGGG 75
L++ R +E + R+ + QR G FL +V+ +E G+AEAEA +G V GG
Sbjct: 607 LEEKRRAIEAQKRRIEAIFAKHRQRLGKSAFL--QVQPREASGEAEAEAEEADSGPVPGG 664
>gi|122937255 NEZHA isoform 1 [Homo sapiens]
Length = 1276
Score = 28.5 bits (62), Expect = 7.6
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 23 LKDLRGHVELSEARLRDVL----QRAGPERFLLQEVETQEGLGDAEAEAA---AGAVGGG 75
L++ R +E + R+ + QR G FL +V+ +E G+AEAEA +G V GG
Sbjct: 634 LEEKRRAIEAQKRRIEAIFAKHRQRLGKSAFL--QVQPREASGEAEAEAEEADSGPVPGG 691
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 28.5 bits (62), Expect = 7.6
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 215 HAASLKLLQDQGLNIPSVVNFQIISTYKHIKLHKMLENTDNSSPSTEHSQGLEKQGVHAA 274
HA +KL++D GL++ T + I ++ N+ S+PS+E + +Q A
Sbjct: 988 HADIVKLIKDAGLSV----------TLRIIPQEEL--NSPTSAPSSEKQSPMAQQSPLAQ 1035
Query: 275 GAAEAGPLASVPAQSAKKPCP 295
+ A P + P +P P
Sbjct: 1036 QSPLAQPSPATPNSPIAQPAP 1056
>gi|30315649 muscleblind-like 3 isoform R [Homo sapiens]
Length = 334
Score = 28.5 bits (62), Expect = 7.6
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 167 EVCLLYNKGEALYG-----YCNLKDKC------NKFHVCKSFVKGECKLQTCKRSHQLIH 215
EVC + +G G Y + D N +C ++KG C + CK H H
Sbjct: 178 EVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPPAH 237
Query: 216 -AASLKLLQDQ 225
A LK Q
Sbjct: 238 LQARLKAAHHQ 248
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,593,472
Number of Sequences: 37866
Number of extensions: 583145
Number of successful extensions: 1939
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1870
Number of HSP's gapped (non-prelim): 78
length of query: 300
length of database: 18,247,518
effective HSP length: 102
effective length of query: 198
effective length of database: 14,385,186
effective search space: 2848266828
effective search space used: 2848266828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.