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Search of human proteins with 17511255
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17511255 poly(A) binding protein interacting protein 1
isoform 1 [Homo sapiens]
(479 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|17511255 poly(A) binding protein interacting protein 1 isofor... 982 0.0
gi|169212085 PREDICTED: similar to poly(A) binding protein inter... 904 0.0
gi|239752553 PREDICTED: similar to poly(A) binding protein inter... 899 0.0
gi|89041275 PREDICTED: similar to poly(A) binding protein intera... 899 0.0
gi|33386693 poly(A) binding protein interacting protein 1 isofor... 795 0.0
gi|34452730 poly(A) binding protein interacting protein 1 isofor... 745 0.0
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 81 2e-15
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 81 2e-15
gi|38201625 eukaryotic translation initiation factor 4 gamma, 1 ... 81 2e-15
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 81 2e-15
gi|38201619 eukaryotic translation initiation factor 4 gamma, 1 ... 81 2e-15
gi|215422401 hypothetical protein LOC9811 isoform 2 [Homo sapiens] 75 1e-13
gi|7662112 hypothetical protein LOC9811 isoform 1 [Homo sapiens] 75 1e-13
gi|10092601 eukaryotic translation initiation factor 4 gamma, 3 ... 68 2e-11
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 53 7e-07
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 47 3e-05
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 47 3e-05
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 47 3e-05
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 47 4e-05
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 46 7e-05
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 46 9e-05
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 46 9e-05
gi|153792074 proline rich 12 [Homo sapiens] 46 9e-05
gi|33356148 formin-like 1 [Homo sapiens] 45 1e-04
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 45 1e-04
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 45 1e-04
gi|197245373 proline rich 22 isoform 1 [Homo sapiens] 44 2e-04
gi|23503299 proline rich 22 isoform 2 [Homo sapiens] 44 2e-04
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 44 2e-04
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 44 2e-04
>gi|17511255 poly(A) binding protein interacting protein 1 isoform 1
[Homo sapiens]
Length = 479
Score = 982 bits (2539), Expect = 0.0
Identities = 479/479 (100%), Positives = 479/479 (100%)
Query: 1 MSDGFDRAPGAGRGRSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLR 60
MSDGFDRAPGAGRGRSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLR
Sbjct: 1 MSDGFDRAPGAGRGRSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLR 60
Query: 61 QPRTTPPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVV 120
QPRTTPPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVV
Sbjct: 61 QPRTTPPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVV 120
Query: 121 APVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEI 180
APVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEI
Sbjct: 121 APVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEI 180
Query: 181 EQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQ 240
EQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQ
Sbjct: 181 EQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQ 240
Query: 241 LLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGL 300
LLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGL
Sbjct: 241 LLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGL 300
Query: 301 RELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSR 360
RELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSR
Sbjct: 301 RELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSR 360
Query: 361 DVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQ 420
DVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQ
Sbjct: 361 DVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQ 420
Query: 421 EKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ 479
EKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
Sbjct: 421 EKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ 479
>gi|169212085 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 516
Score = 904 bits (2336), Expect = 0.0
Identities = 445/456 (97%), Positives = 446/456 (97%), Gaps = 1/456 (0%)
Query: 24 GGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSR 83
GG + GG PNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPS
Sbjct: 62 GGQDSGG-PNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSP 120
Query: 84 PGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSS 143
PGALPEQTR LRAPPSSQDKIPQQNSESAMAKPQVVVAPVL SKLSVNAPEFYPSGYSSS
Sbjct: 121 PGALPEQTRSLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLRSKLSVNAPEFYPSGYSSS 180
Query: 144 YTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVEL 203
YTESYE GCEDYPT SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQEL EL
Sbjct: 181 YTESYEVGCEDYPTPSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELAEL 240
Query: 204 IYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVT 263
IYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVT
Sbjct: 241 IYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVT 300
Query: 264 RKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLL 323
RKRFHAFV FLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLL
Sbjct: 301 RKRFHAFVFFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLL 360
Query: 324 KLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHAT 383
KLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHAT
Sbjct: 361 KLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHAT 420
Query: 384 STYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDL 443
STYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDL
Sbjct: 421 STYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDL 480
Query: 444 SGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ 479
SGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
Sbjct: 481 SGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ 516
>gi|239752553 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 457
Score = 899 bits (2323), Expect = 0.0
Identities = 441/448 (98%), Positives = 441/448 (98%)
Query: 32 PNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSRPGALPEQT 91
PNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPS PGALPEQT
Sbjct: 10 PNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSPPGALPEQT 69
Query: 92 RPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDG 151
R LRAPPSSQDKIPQQNSESAMAKPQVVVAPVL SKLSVNAPEFYPSGYSSSYTESYE G
Sbjct: 70 RSLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLRSKLSVNAPEFYPSGYSSSYTESYEVG 129
Query: 152 CEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSI 211
CEDYPT SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQEL ELIYQQATSI
Sbjct: 130 CEDYPTPSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELAELIYQQATSI 189
Query: 212 PNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFV 271
PNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFV
Sbjct: 190 PNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFV 249
Query: 272 LFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLE 331
FLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLE
Sbjct: 250 FFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLE 309
Query: 332 DAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATP 391
DAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATP
Sbjct: 310 DAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATP 369
Query: 392 ENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYL 451
ENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYL
Sbjct: 370 ENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYL 429
Query: 452 DDIDDEMDPEIEEAYEKFCLESERKRKQ 479
DDIDDEMDPEIEEAYEKFCLESERKRKQ
Sbjct: 430 DDIDDEMDPEIEEAYEKFCLESERKRKQ 457
>gi|89041275 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 488
Score = 899 bits (2323), Expect = 0.0
Identities = 441/448 (98%), Positives = 441/448 (98%)
Query: 32 PNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSRPGALPEQT 91
PNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPS PGALPEQT
Sbjct: 41 PNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSPPGALPEQT 100
Query: 92 RPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDG 151
R LRAPPSSQDKIPQQNSESAMAKPQVVVAPVL SKLSVNAPEFYPSGYSSSYTESYE G
Sbjct: 101 RSLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLRSKLSVNAPEFYPSGYSSSYTESYEVG 160
Query: 152 CEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSI 211
CEDYPT SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQEL ELIYQQATSI
Sbjct: 161 CEDYPTPSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELAELIYQQATSI 220
Query: 212 PNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFV 271
PNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFV
Sbjct: 221 PNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFV 280
Query: 272 LFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLE 331
FLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLE
Sbjct: 281 FFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLE 340
Query: 332 DAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATP 391
DAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATP
Sbjct: 341 DAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATP 400
Query: 392 ENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYL 451
ENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYL
Sbjct: 401 ENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYL 460
Query: 452 DDIDDEMDPEIEEAYEKFCLESERKRKQ 479
DDIDDEMDPEIEEAYEKFCLESERKRKQ
Sbjct: 461 DDIDDEMDPEIEEAYEKFCLESERKRKQ 488
>gi|33386693 poly(A) binding protein interacting protein 1 isoform 2
[Homo sapiens]
Length = 400
Score = 795 bits (2053), Expect = 0.0
Identities = 392/392 (100%), Positives = 392/392 (100%)
Query: 88 PEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTES 147
PEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTES
Sbjct: 9 PEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTES 68
Query: 148 YEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQ 207
YEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQ
Sbjct: 69 YEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQ 128
Query: 208 ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRF 267
ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRF
Sbjct: 129 ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRF 188
Query: 268 HAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTG 327
HAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTG
Sbjct: 189 HAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTG 248
Query: 328 SVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 387
SVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR
Sbjct: 249 SVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYR 308
Query: 388 EATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAG 447
EATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAG
Sbjct: 309 EATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAG 368
Query: 448 DPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ 479
DPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
Sbjct: 369 DPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ 400
>gi|34452730 poly(A) binding protein interacting protein 1 isoform 3
[Homo sapiens]
Length = 367
Score = 745 bits (1924), Expect = 0.0
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 113 MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ 172
MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ
Sbjct: 1 MAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQ 60
Query: 173 PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS 232
PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS
Sbjct: 61 PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS 120
Query: 233 PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR 292
PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR
Sbjct: 121 PQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTR 180
Query: 293 ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV 352
ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV
Sbjct: 181 ADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENV 240
Query: 353 VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF 412
VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF
Sbjct: 241 VLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPF 300
Query: 413 TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE 472
TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE
Sbjct: 301 TAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLE 360
Query: 473 SERKRKQ 479
SERKRKQ
Sbjct: 361 SERKRKQ 367
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 80.9 bits (198), Expect = 2e-15
Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 57/310 (18%)
Query: 105 PQQNSESAMAKPQVVVAPVLMSK-LSVNAPEFYPSGYSSSYTESYEDGCEDYP-----TL 158
P+++ + +P+ ++A VLM++ + +N E S + G ED L
Sbjct: 701 PRRSQQGPRKEPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEEDADGSKTQDL 760
Query: 159 SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMG 218
V+ LN LT P F+ ++Q + + T++ L+ +++LI+++A S PNFS
Sbjct: 761 FRRVRSILNKLT--PQMFQQLMKQVTQL---AIDTEERLKGVIDLIFEKAISEPNFSVAY 815
Query: 219 ARLCNYLSHHLTISPQSG----NFRQLLLQRCRTEYE----------------------- 251
A +C L + + NFR+LLL RC+ E+E
Sbjct: 816 ANMCRCLMALKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAE 875
Query: 252 ----VKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNAL 307
+K++ + ++ R+R + F+GEL+ L++ + + + + + L
Sbjct: 876 ERGRLKEELEEARDIARRRSLGNIKFIGELF-KLKM-----------LTEAIMHDCVVKL 923
Query: 308 FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLL 367
N +++L C +LL G L+ EK K M++ ++E ++ + S ++ ML
Sbjct: 924 LKNHDEESLECLCRLLTTIGKDLDF---EKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQ 980
Query: 368 KLVELRSSNW 377
+++LR SNW
Sbjct: 981 DVLDLRGSNW 990
Score = 31.6 bits (70), Expect = 1.7
Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 7/112 (6%)
Query: 43 HQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQD 102
H+P L+P P PPP E P P P A PE+ P + D
Sbjct: 359 HEPNGMVPSEDLEPEVESSPELAPPPACPSESPV----PIAPTAQPEELLNGAPSPPAVD 414
Query: 103 KIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCED 154
P E + +AP + + P PS S + E E+ E+
Sbjct: 415 LSPVSEPEEQAKEVTASMAPPTIPSAT---PATAPSATSPAQEEEMEEEEEE 463
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 80.9 bits (198), Expect = 2e-15
Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 57/310 (18%)
Query: 105 PQQNSESAMAKPQVVVAPVLMSK-LSVNAPEFYPSGYSSSYTESYEDGCEDYP-----TL 158
P+++ + +P+ ++A VLM++ + +N E S + G ED L
Sbjct: 614 PRRSQQGPRKEPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEEDADGSKTQDL 673
Query: 159 SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMG 218
V+ LN LT P F+ ++Q + + T++ L+ +++LI+++A S PNFS
Sbjct: 674 FRRVRSILNKLT--PQMFQQLMKQVTQL---AIDTEERLKGVIDLIFEKAISEPNFSVAY 728
Query: 219 ARLCNYLSHHLTISPQSG----NFRQLLLQRCRTEYE----------------------- 251
A +C L + + NFR+LLL RC+ E+E
Sbjct: 729 ANMCRCLMALKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAE 788
Query: 252 ----VKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNAL 307
+K++ + ++ R+R + F+GEL+ L++ + + + + + L
Sbjct: 789 ERGRLKEELEEARDIARRRSLGNIKFIGELF-KLKM-----------LTEAIMHDCVVKL 836
Query: 308 FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLL 367
N +++L C +LL G L+ EK K M++ ++E ++ + S ++ ML
Sbjct: 837 LKNHDEESLECLCRLLTTIGKDLDF---EKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQ 893
Query: 368 KLVELRSSNW 377
+++LR SNW
Sbjct: 894 DVLDLRGSNW 903
Score = 31.6 bits (70), Expect = 1.7
Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 7/112 (6%)
Query: 43 HQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQD 102
H+P L+P P PPP E P P P A PE+ P + D
Sbjct: 272 HEPNGMVPSEDLEPEVESSPELAPPPACPSESPV----PIAPTAQPEELLNGAPSPPAVD 327
Query: 103 KIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCED 154
P E + +AP + + P PS S + E E+ E+
Sbjct: 328 LSPVSEPEEQAKEVTASMAPPTIPSAT---PATAPSATSPAQEEEMEEEEEE 376
>gi|38201625 eukaryotic translation initiation factor 4 gamma, 1
isoform 3 [Homo sapiens]
Length = 1435
Score = 80.9 bits (198), Expect = 2e-15
Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 57/310 (18%)
Query: 105 PQQNSESAMAKPQVVVAPVLMSK-LSVNAPEFYPSGYSSSYTESYEDGCEDYP-----TL 158
P+++ + +P+ ++A VLM++ + +N E S + G ED L
Sbjct: 537 PRRSQQGPRKEPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEEDADGSKTQDL 596
Query: 159 SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMG 218
V+ LN LT P F+ ++Q + + T++ L+ +++LI+++A S PNFS
Sbjct: 597 FRRVRSILNKLT--PQMFQQLMKQVTQL---AIDTEERLKGVIDLIFEKAISEPNFSVAY 651
Query: 219 ARLCNYLSHHLTISPQSG----NFRQLLLQRCRTEYE----------------------- 251
A +C L + + NFR+LLL RC+ E+E
Sbjct: 652 ANMCRCLMALKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAE 711
Query: 252 ----VKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNAL 307
+K++ + ++ R+R + F+GEL+ L++ + + + + + L
Sbjct: 712 ERGRLKEELEEARDIARRRSLGNIKFIGELF-KLKM-----------LTEAIMHDCVVKL 759
Query: 308 FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLL 367
N +++L C +LL G L+ EK K M++ ++E ++ + S ++ ML
Sbjct: 760 LKNHDEESLECLCRLLTTIGKDLDF---EKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQ 816
Query: 368 KLVELRSSNW 377
+++LR SNW
Sbjct: 817 DVLDLRGSNW 826
Score = 31.6 bits (70), Expect = 1.7
Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 7/112 (6%)
Query: 43 HQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQD 102
H+P L+P P PPP E P P P A PE+ P + D
Sbjct: 195 HEPNGMVPSEDLEPEVESSPELAPPPACPSESPV----PIAPTAQPEELLNGAPSPPAVD 250
Query: 103 KIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCED 154
P E + +AP + + P PS S + E E+ E+
Sbjct: 251 LSPVSEPEEQAKEVTASMAPPTIPSAT---PATAPSATSPAQEEEMEEEEEE 299
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 80.9 bits (198), Expect = 2e-15
Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 57/310 (18%)
Query: 105 PQQNSESAMAKPQVVVAPVLMSK-LSVNAPEFYPSGYSSSYTESYEDGCEDYP-----TL 158
P+++ + +P+ ++A VLM++ + +N E S + G ED L
Sbjct: 701 PRRSQQGPRKEPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEEDADGSKTQDL 760
Query: 159 SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMG 218
V+ LN LT P F+ ++Q + + T++ L+ +++LI+++A S PNFS
Sbjct: 761 FRRVRSILNKLT--PQMFQQLMKQVTQL---AIDTEERLKGVIDLIFEKAISEPNFSVAY 815
Query: 219 ARLCNYLSHHLTISPQSG----NFRQLLLQRCRTEYE----------------------- 251
A +C L + + NFR+LLL RC+ E+E
Sbjct: 816 ANMCRCLMALKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAE 875
Query: 252 ----VKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNAL 307
+K++ + ++ R+R + F+GEL+ L++ + + + + + L
Sbjct: 876 ERGRLKEELEEARDIARRRSLGNIKFIGELF-KLKM-----------LTEAIMHDCVVKL 923
Query: 308 FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLL 367
N +++L C +LL G L+ EK K M++ ++E ++ + S ++ ML
Sbjct: 924 LKNHDEESLECLCRLLTTIGKDLDF---EKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQ 980
Query: 368 KLVELRSSNW 377
+++LR SNW
Sbjct: 981 DVLDLRGSNW 990
Score = 31.6 bits (70), Expect = 1.7
Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 7/112 (6%)
Query: 43 HQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQD 102
H+P L+P P PPP E P P P A PE+ P + D
Sbjct: 359 HEPNGMVPSEDLEPEVESSPELAPPPACPSESPV----PIAPTAQPEELLNGAPSPPAVD 414
Query: 103 KIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCED 154
P E + +AP + + P PS S + E E+ E+
Sbjct: 415 LSPVSEPEEQAKEVTASMAPPTIPSAT---PATAPSATSPAQEEEMEEEEEE 463
>gi|38201619 eukaryotic translation initiation factor 4 gamma, 1
isoform 4 [Homo sapiens]
Length = 1403
Score = 80.9 bits (198), Expect = 2e-15
Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 57/310 (18%)
Query: 105 PQQNSESAMAKPQVVVAPVLMSK-LSVNAPEFYPSGYSSSYTESYEDGCEDYP-----TL 158
P+++ + +P+ ++A VLM++ + +N E S + G ED L
Sbjct: 505 PRRSQQGPRKEPRKIIATVLMTEDIKLNKAEKAWKPSSKRTAADKDRGEEDADGSKTQDL 564
Query: 159 SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMG 218
V+ LN LT P F+ ++Q + + T++ L+ +++LI+++A S PNFS
Sbjct: 565 FRRVRSILNKLT--PQMFQQLMKQVTQL---AIDTEERLKGVIDLIFEKAISEPNFSVAY 619
Query: 219 ARLCNYLSHHLTISPQSG----NFRQLLLQRCRTEYE----------------------- 251
A +C L + + NFR+LLL RC+ E+E
Sbjct: 620 ANMCRCLMALKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAE 679
Query: 252 ----VKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNAL 307
+K++ + ++ R+R + F+GEL+ L++ + + + + + L
Sbjct: 680 ERGRLKEELEEARDIARRRSLGNIKFIGELF-KLKM-----------LTEAIMHDCVVKL 727
Query: 308 FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLL 367
N +++L C +LL G L+ EK K M++ ++E ++ + S ++ ML
Sbjct: 728 LKNHDEESLECLCRLLTTIGKDLDF---EKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQ 784
Query: 368 KLVELRSSNW 377
+++LR SNW
Sbjct: 785 DVLDLRGSNW 794
Score = 31.6 bits (70), Expect = 1.7
Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 7/112 (6%)
Query: 43 HQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQD 102
H+P L+P P PPP E P P P A PE+ P + D
Sbjct: 163 HEPNGMVPSEDLEPEVESSPELAPPPACPSESPV----PIAPTAQPEELLNGAPSPPAVD 218
Query: 103 KIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCED 154
P E + +AP + + P PS S + E E+ E+
Sbjct: 219 LSPVSEPEEQAKEVTASMAPPTIPSAT---PATAPSATSPAQEEEMEEEEEE 267
>gi|215422401 hypothetical protein LOC9811 isoform 2 [Homo sapiens]
Length = 600
Score = 75.1 bits (183), Expect = 1e-13
Identities = 53/216 (24%), Positives = 111/216 (51%), Gaps = 16/216 (7%)
Query: 164 DFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCN 223
+ LN + +T++ F E +++ L E+V IYQ+A S +F++ A+LC+
Sbjct: 379 EILNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCD 438
Query: 224 YLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEI 283
++ + + FR LLL + ++ V+++ + D +R+ F+ FL E++ +
Sbjct: 439 KMALFMV---EGTKFRSLLLNMLQKDFTVREELQQQDV---ERWLGFITFLCEVFGTM-- 490
Query: 284 KGTNGQVTRADI--LQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMD 341
+ + G+ R + + LRELL + + +D ++C L+ TG +LE+ E
Sbjct: 491 RSSTGEPFRVLVCPIYTCLRELLQS--QDVKEDAVLCCSMELQSTGRLLEEQLPEM---- 544
Query: 342 MEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNW 377
M E++ + +L + S + +LL+++EL +++W
Sbjct: 545 MTELLASARDKMLCPSESMLTRSLLLEVIELHANSW 580
>gi|7662112 hypothetical protein LOC9811 isoform 1 [Homo sapiens]
Length = 598
Score = 75.1 bits (183), Expect = 1e-13
Identities = 53/216 (24%), Positives = 111/216 (51%), Gaps = 16/216 (7%)
Query: 164 DFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCN 223
+ LN + +T++ F E +++ L E+V IYQ+A S +F++ A+LC+
Sbjct: 377 EILNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCD 436
Query: 224 YLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEI 283
++ + + FR LLL + ++ V+++ + D +R+ F+ FL E++ +
Sbjct: 437 KMALFMV---EGTKFRSLLLNMLQKDFTVREELQQQDV---ERWLGFITFLCEVFGTM-- 488
Query: 284 KGTNGQVTRADI--LQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMD 341
+ + G+ R + + LRELL + + +D ++C L+ TG +LE+ E
Sbjct: 489 RSSTGEPFRVLVCPIYTCLRELLQS--QDVKEDAVLCCSMELQSTGRLLEEQLPEM---- 542
Query: 342 MEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNW 377
M E++ + +L + S + +LL+++EL +++W
Sbjct: 543 MTELLASARDKMLCPSESMLTRSLLLEVIELHANSW 578
>gi|10092601 eukaryotic translation initiation factor 4 gamma, 3
[Homo sapiens]
Length = 1585
Score = 67.8 bits (164), Expect = 2e-11
Identities = 65/270 (24%), Positives = 122/270 (45%), Gaps = 55/270 (20%)
Query: 142 SSYTESYEDGCEDYPT--LSEYVQDFLNHLTEQPGSFETEIEQFAETLNGC-VTTDDALQ 198
S +S D E+ T L V+ LN LT Q Q + ++G V T++ L+
Sbjct: 736 SQKRDSQADDPENIKTQELFRKVRSILNKLTPQM------FNQLMKQVSGLTVDTEERLK 789
Query: 199 ELVELIYQQATSIPNFSYMGARLCNYL-SHHLTISPQSGN---FRQLLLQRCRTEYE--- 251
+++L++++A P+FS A +C L + + ++ + GN FR+LLL RC+ E+E
Sbjct: 790 GVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDK 849
Query: 252 ------------------------VKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTN 287
+ D+ + + R+R + F+GEL+ L++
Sbjct: 850 ADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELF-KLKM---- 904
Query: 288 GQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQ 347
+ + + + + L N +++L C +LL G L+ EK K M++
Sbjct: 905 -------LTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDF---EKAKPRMDQYFN 954
Query: 348 RIENVVLDANCSRDVKQMLLKLVELRSSNW 377
++E +V + S ++ ML +++LR NW
Sbjct: 955 QMEKIVKERKTSSRIRFMLQDVIDLRLCNW 984
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 52.8 bits (125), Expect = 7e-07
Identities = 47/153 (30%), Positives = 59/153 (38%), Gaps = 41/153 (26%)
Query: 4 GFDRAPGAGRGRSRGLGRGGGGPEGGGFPNGAGPA----------ERARHQPPQPKAPGF 53
G RAPGAGR LG GG P G G G GP + R QPP P P
Sbjct: 1126 GAPRAPGAGR---LDLGSGGRAPVGTGTAPGGGPGSGVDAKAGWVDNTRPQPPPPPLP-- 1180
Query: 54 LQPPPLRQPR--TTPPPGAQCEV---------------------PASPQRPSRPG-ALPE 89
PPP QPR PP A+ EV P +P R G +P
Sbjct: 1181 --PPPEAQPRRLEPAPPRARPEVAPEGEPGAPDSRAGGDTALSGDGDPPKPERKGPEMPR 1238
Query: 90 QTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAP 122
L P + ++I + S ++A P + + P
Sbjct: 1239 LFLDLGPPQGNSEQIKARLSRLSLALPPLTLTP 1271
Score = 33.1 bits (74), Expect = 0.57
Identities = 31/100 (31%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 17 RGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKA---PGFLQPPPLRQPRTTPPPGAQCE 73
RG GRGGG P P A PA A P +A P L R P + + E
Sbjct: 515 RGAGRGGGAP--AWQPASAPPAPHANPSNPFYEALSTPSVLPVISARSPSVSSEYYIRLE 572
Query: 74 VPASPQRPSRPGALPEQTRPLRAP--PSSQDKIPQQNSES 111
SP P P + AP P + ++PQ SE+
Sbjct: 573 EHGSPPEPLFPNDWDPLDPGVPAPQAPQAPSEVPQLVSET 612
Score = 32.3 bits (72), Expect = 0.97
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 26/108 (24%)
Query: 23 GGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPS 82
G P GG P RA PP+P PG +PPP P P PG + E P + S
Sbjct: 834 GAFPGGGAAEEEGVPRPRA---PPEPPDPGAPRPPP--DPGPLPLPGPR-EKPTFVVQVS 887
Query: 83 ------------------RPGALPEQTRPLRA--PPSSQDKIPQQNSE 110
GA +T P +A P +++K+P N +
Sbjct: 888 TEQLLMSLREDVTRNLLGEKGATARETGPRKAGRGPGNREKVPGLNRD 935
Score = 29.6 bits (65), Expect = 6.3
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 13/51 (25%)
Query: 45 PPQPKAPGFLQP-------------PPLRQPRTTPPPGAQCEVPASPQRPS 82
PP P FL P PP P PPP A + ASP PS
Sbjct: 753 PPASAPPEFLDPLMGAAAPQYPGRGPPPAPPPPPPPPRAPADPAASPDPPS 803
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 47.4 bits (111), Expect = 3e-05
Identities = 33/70 (47%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 21 RGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQR 80
RGGGG G GA PA PP P AP QPPP P PPPG PA PQ
Sbjct: 4 RGGGGRPGES--PGATPAPGP--PPPPPPAPPQQQPPP--PPPPAPPPGPG---PAPPQH 54
Query: 81 PSRPGALPEQ 90
P R ALP +
Sbjct: 55 PPRAEALPPE 64
Score = 35.8 bits (81), Expect = 0.088
Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 32 PNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSRPGALPEQT 91
P G PA + PP PG P R PRT+P G A P P+R L +
Sbjct: 762 PPGPAPAAASPGPPPPASPPG--APASPRAPRTSPYGGLPAAPLAGPALPAR--RLSRAS 817
Query: 92 RPLRAPPSSQDKIP 105
RPL A SQ +P
Sbjct: 818 RPLSA---SQPSLP 828
>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
Length = 306
Score = 47.4 bits (111), Expect = 3e-05
Identities = 47/194 (24%), Positives = 70/194 (36%), Gaps = 35/194 (18%)
Query: 10 GAGRGRSRGLGRGGGGPEGGGFPNGAGP----AERARHQP------PQPKAPGFLQPPPL 59
G+G GR R L G GG G G P GAG E +P P+P+ +PP
Sbjct: 18 GSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRP 77
Query: 60 RQPRTTPPPGAQCEVPASPQRPSRPG-----------------ALPEQTRPLRAPPSSQD 102
R P P PG P S + PG A+ + R +
Sbjct: 78 RAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLK 137
Query: 103 KIPQQ-NSESAMAKPQVVVAPVLMS---KLSVNAPEFYPS----GYSSSYTESYEDGCED 154
++ + + M+ P PV+MS K+ +A Y G ++ E++ GC
Sbjct: 138 ELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGS 197
Query: 155 YPTLSEYVQDFLNH 168
++ F H
Sbjct: 198 VNRVTILCDKFSGH 211
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 47.4 bits (111), Expect = 3e-05
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 23 GGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPS 82
G P+GG P G P PP PPP +P+ PP G + P SP P
Sbjct: 38 GPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSP--PG 95
Query: 83 RPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQ 117
+P P Q + PP +Q Q++ S KPQ
Sbjct: 96 KPQGPPPQGGKPQGPP-AQGGSKSQSARSPPGKPQ 129
Score = 39.3 bits (90), Expect = 0.008
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 15/122 (12%)
Query: 6 DRAPGAGRGRSRGLG-RGGGGPEGG----GFPNGAGPAERARHQPPQPKAPGFLQPPP-- 58
+ +P G +G +GG P+G G P GP + ++P P PG Q PP
Sbjct: 26 EESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQ--GPPPQGGNKPQGPPPPGKPQGPPPQ 83
Query: 59 ---LRQPRTTPPPGAQCEVPASPQRPSRPGAL-PEQTRPLRAPPSSQDKIPQQNSESAMA 114
R PR+ PPG P +P P A +++ R+PP PQQ +
Sbjct: 84 GDKSRSPRS--PPGKPQGPPPQGGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQG 141
Query: 115 KP 116
P
Sbjct: 142 PP 143
Score = 38.9 bits (89), Expect = 0.010
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 33 NGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGA-QCEVPASPQRPSRPGALPEQT 91
N GP+ + ++P P PPP +P+ PP G + + P P +P P +++
Sbjct: 35 NPQGPSPQGGNKPQGP-------PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKS 87
Query: 92 RPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSG 139
R R+PP P Q KPQ A S +P P G
Sbjct: 88 RSPRSPPGKPQGPPPQG-----GKPQGPPAQGGSKSQSARSPPGKPQG 130
Score = 36.2 bits (82), Expect = 0.068
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 8/113 (7%)
Query: 9 PGAGRGRSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPP 68
PG +G G GP G P G P P P PG Q PP + + PP
Sbjct: 54 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSP--PGKPQGPPPQGGKPQGPP 111
Query: 69 ---GAQCEVPASPQRPSRPGALPEQT-RPLRAPPSSQDKIPQQNSESAMAKPQ 117
G++ + SP P +P P+Q + PP PQQ +PQ
Sbjct: 112 AQGGSKSQSARSP--PGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 162
Score = 35.8 bits (81), Expect = 0.088
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 7 RAPGAGRGRSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQ-------PPPL 59
R+P + G+ +G GG P+G G ++ AR P +P+ P + PPP
Sbjct: 88 RSPRSPPGKPQGPPPQGGKPQGPP-AQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPA 146
Query: 60 ----RQPRTTPPPGAQCEVPASPQRPSRPGALPE 89
+QP+ PP Q + P P + RP P+
Sbjct: 147 GGNPQQPQA--PPAGQPQGPPRPPQGGRPSRPPQ 178
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 47.0 bits (110), Expect = 4e-05
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 23 GGGPEGGGFPNGAGPAERARHQPPQ--------PKAPGFLQPPPLR---QPRTTPPPGAQ 71
G P+GG P G P + + PPQ PG Q PP + QP+ PPP +
Sbjct: 141 GPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGK 200
Query: 72 CEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQ 117
+ P PQ ++P P +P PP +K Q++ S KPQ
Sbjct: 201 PQGP-PPQGGNKPQGPPPPGKPQGPPPQGDNK--SQSARSPPGKPQ 243
Score = 45.4 bits (106), Expect = 1e-04
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 23 GGGPEGGGFPNGAGPAERARHQPPQ--------PKAPGFLQPPPLR---QPRTTPPPGAQ 71
G P+GG P G P + + PPQ PG Q PP + QP+ PPP +
Sbjct: 203 GPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGK 262
Query: 72 CEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQ 117
+ P PQ ++P P +P PP K ++S S KPQ
Sbjct: 263 PQGP-PPQGGNKPQGPPPPGKPQGPPPQGGSK--SRSSRSPPGKPQ 305
Score = 45.1 bits (105), Expect = 1e-04
Identities = 36/112 (32%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 9 PGAGRGRSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLR---QPRTT 65
PG +G G GP G P G P P P PG Q PP + QP+
Sbjct: 75 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSP--PGKPQGPPPQGGNQPQGP 132
Query: 66 PPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQ 117
PPP + + P PQ ++P P +P PP +K ++S S KPQ
Sbjct: 133 PPPPGKPQGP-PPQGGNKPQGPPPPGKPQGPPPQGDNK--SRSSRSPPGKPQ 181
Score = 44.7 bits (104), Expect = 2e-04
Identities = 34/117 (29%), Positives = 45/117 (38%), Gaps = 23/117 (19%)
Query: 23 GGGPEGGGFPNGAGPAERARHQPPQ--------PKAPGFLQPPPLR---QPRTTPPPGAQ 71
G P+GG P G P + + PPQ PG Q PP + QP+ PPP +
Sbjct: 265 GPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGK 324
Query: 72 CE--------VPASPQRPSRPGALPEQ----TRPLRAPPSSQDKIPQQNSESAMAKP 116
+ P P P +P P Q +R R+PP PQQ + P
Sbjct: 325 PQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPP 381
Score = 42.7 bits (99), Expect = 7e-04
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 20 GRGGGG-PEGGGFPNG-AGPAERARHQPP----QPKAPGFLQPPPLRQPRTTPPPGA-QC 72
G G P+GG P G P + + PP QP+ P PPP +P+ PP G +
Sbjct: 34 GNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGP----PPPPGKPQGPPPQGGNKP 89
Query: 73 EVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKP 116
+ P P +P P +++R R+PP P Q P
Sbjct: 90 QGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPP 133
Score = 38.1 bits (87), Expect = 0.018
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 23 GGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPS 82
G P+GG P G P PP PPP +P+ PP G + ++ P
Sbjct: 306 GPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGS-KSRSARSPPG 364
Query: 83 RPGALPEQT-RPLRAPPSSQDKIPQQNSESAMAKPQ 117
+P P+Q + PP PQQ +PQ
Sbjct: 365 KPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 400
Score = 33.5 bits (75), Expect = 0.44
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 26/95 (27%)
Query: 23 GGGPEGGGFPNGAGPAERARHQPPQPKA--------PGFLQPPPLRQ---PRTTPPPGA- 70
G P+GG P G P + + PPQ + PG Q PP ++ P+ PPP
Sbjct: 327 GPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGG 386
Query: 71 --------QCEVPASPQRPSRPGALPEQTRPLRAP 97
P P RP P+ RP R P
Sbjct: 387 NPQQPQAPPAGQPQGPPRP------PQGGRPSRPP 415
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 46.2 bits (108), Expect = 7e-05
Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 7 RAPGAGRGRSRGLGRGGGGP-EGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTT 65
R+P G G ++ G G GP + G P P + Q P P+ P QPPP QP
Sbjct: 32 RSPPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPP-HQPPPH 90
Query: 66 PPPGAQCEVPASPQRPSRPGALPEQTRPL----RAPPSSQDKIP 105
P P Q + P PQ S+P + + P APP+S P
Sbjct: 91 PQPHQQQQPPPPPQDSSKP-VVAQGPGPAPGVGSAPPASSSAPP 133
Score = 44.3 bits (103), Expect = 2e-04
Identities = 39/115 (33%), Positives = 47/115 (40%), Gaps = 13/115 (11%)
Query: 13 RGRSRGLG------RGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTP 66
R RSRG G RGGGG GG + P +Q P PG Q P +P P
Sbjct: 5 RFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGP--KPPIPP 62
Query: 67 PPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVA 121
PP Q + PQ+P P+Q P + PP Q QQ + VVA
Sbjct: 63 PPPHQQQQQPPPQQPP-----PQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVA 112
Score = 35.0 bits (79), Expect = 0.15
Identities = 24/88 (27%), Positives = 29/88 (32%), Gaps = 6/88 (6%)
Query: 1 MSDGFDRAPGAGRGRSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLR 60
++ G APG G P G P G+GP P P PP
Sbjct: 111 VAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPG------PTPTPPPAVTSAPPGA 164
Query: 61 QPRTTPPPGAQCEVPASPQRPSRPGALP 88
P T P G P + P P A+P
Sbjct: 165 PPPTPPSSGVPTTPPQAGGPPPPPAAVP 192
Score = 35.0 bits (79), Expect = 0.15
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 9 PGAGRGRSRGLGRGG-------GGPEGGGFPNGAGPAERARHQPP-----QPKAPGFLQP 56
PG G G +G G GG GGP+ GG P + P + PP +P+ P
Sbjct: 192 PGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPK--PPHRGGGEPRGGRQHHP 249
Query: 57 PPLRQPRTTPPPG 69
P +Q PPPG
Sbjct: 250 PYHQQHHQGPPPG 262
Score = 30.8 bits (68), Expect = 2.8
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 15 RSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPR 63
R+ G+GG GP GG P G GP A + + + G P ++PR
Sbjct: 663 RTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEG-----PNKKPR 706
Score = 30.0 bits (66), Expect = 4.8
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 9 PGAGRGRSRGLG------RGGGGPEGGGFPNGAGPAERARHQPPQPKAPG 52
PG G G S G RGGG P GG + P + HQ P P PG
Sbjct: 218 PGGGPGLSTPGGHPKPPHRGGGEPRGGRQHHP--PYHQQHHQGPPPGGPG 265
Score = 29.3 bits (64), Expect = 8.3
Identities = 21/80 (26%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
Query: 27 EGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQ-PRTTPPPGAQCEVPASPQRPSRPG 85
+G G G G A A P P PP P TPPP P +P
Sbjct: 113 QGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSS 172
Query: 86 ALPEQTRPLRAPPSSQDKIP 105
+P PP +P
Sbjct: 173 GVPTTPPQAGGPPPPPAAVP 192
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 45.8 bits (107), Expect = 9e-05
Identities = 35/117 (29%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
Query: 23 GGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPS 82
G P+GG P G P PP PPP +P+ PP G + P SP P
Sbjct: 38 GPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSP--PG 95
Query: 83 RPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSG 139
+P P Q + PP PQ KPQ A S +P P G
Sbjct: 96 KPQGPPPQGGKPQGPPPQGGNKPQ--GPPPPGKPQGPPAQGGSKSQSARSPPGKPQG 150
Score = 43.1 bits (100), Expect = 6e-04
Identities = 32/112 (28%), Positives = 40/112 (35%), Gaps = 6/112 (5%)
Query: 9 PGAGRGRSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPP 68
PG +G G GP G P G P P P PG Q PP + + PP
Sbjct: 54 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSP--PGKPQGPPPQGGKPQGPP 111
Query: 69 GAQCEVPASPQRPSRPGALPEQ----TRPLRAPPSSQDKIPQQNSESAMAKP 116
P P P +P P Q ++ R+PP PQQ + P
Sbjct: 112 PQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPP 163
Score = 38.9 bits (89), Expect = 0.010
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 33 NGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGA-QCEVPASPQRPSRPGALPEQT 91
N GP+ + ++P P PPP +P+ PP G + + P P +P P +++
Sbjct: 35 NPQGPSPQGGNKPQGP-------PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKS 87
Query: 92 RPLRAPPSSQDKIPQQNSESAMAKPQ 117
R R+PP P Q + PQ
Sbjct: 88 RSPRSPPGKPQGPPPQGGKPQGPPPQ 113
Score = 32.3 bits (72), Expect = 0.97
Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 31/116 (26%)
Query: 7 RAPGAGRGRSRGLGRGGGGPEG-----GGFPNGAGPAERARHQPPQPKA--------PGF 53
R+P + G+ +G GG P+G G P G P + + P Q + PG
Sbjct: 88 RSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGK 147
Query: 54 LQPPPLRQ---PRTTPPPGA---------QCEVPASPQRPSRPGALPEQTRPLRAP 97
Q PP ++ P+ PPP P P RP P+ RP R P
Sbjct: 148 PQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRP------PQGGRPSRPP 197
Score = 31.2 bits (69), Expect = 2.2
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 20 GRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPP-GAQCEVPASP 78
G+ G P GG P G P + ++P P PG +P+ P G++ + SP
Sbjct: 95 GKPQGPPPQGGKPQG--PPPQGGNKPQGPPPPG--------KPQGPPAQGGSKSQSARSP 144
Query: 79 QRPSRPGALPEQT-RPLRAPPSSQDKIPQQNSESAMAKPQ 117
P +P P+Q + PP PQQ +PQ
Sbjct: 145 --PGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 182
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 45.8 bits (107), Expect = 9e-05
Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 9 PGAGRGRSRGLGRGGGGPEG-----GGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPR 63
P G +S+G G PEG G P G P PP + +PPP +P+
Sbjct: 208 PPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQ 267
Query: 64 TTPPPGAQCEVPASPQ--RPSRPGALPEQTRPLRAPPSSQ 101
PPPG + P P +P P P+ RP R PP Q
Sbjct: 268 GPPPPGGNPQQPLPPPAGKPQGPPPPPQGGRPHR-PPQGQ 306
Score = 40.4 bits (93), Expect = 0.004
Identities = 30/94 (31%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 2 SDGFDRAPGAGRGR-SRGLGRGGGGPEGGGFPNGAGPAERARHQ-PPQPKAPGFLQPPPL 59
S G PG G S+G + G P G P G P E + Q PP P P PP
Sbjct: 215 SQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGG 274
Query: 60 RQPRTTPPPGAQCEVPASPQRPSRPGALPEQTRP 93
+ PPP + + P P + RP P+ P
Sbjct: 275 NPQQPLPPPAGKPQGPPPPPQGGRPHRPPQGQPP 308
Score = 39.3 bits (90), Expect = 0.008
Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 10/118 (8%)
Query: 9 PGAGRGRSRGLGRGGGGPEG----GGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRT 64
P G +S+G G PEG GG + P + + P P+ Q PP R +
Sbjct: 145 PPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKP 204
Query: 65 T-PPPGAQCEVPASPQRPSRPGALPEQ--TRPLRAPP---SSQDKIPQQNSESAMAKP 116
PPP + P RP +P P Q +P PP Q PQ+ ++ P
Sbjct: 205 EGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPP 262
Score = 37.0 bits (84), Expect = 0.040
Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 9 PGAGRGRSRGLGRGGGGPEG----GGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRT 64
P G +S+G G PEG GG + P + + P P+ Q PP R +
Sbjct: 82 PPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKP 141
Query: 65 T-PPPGAQCEVPASPQRPSRP-GALPEQTRPLRAPPSSQDK---IPQQNSESAMAKP 116
PPP + P RP +P G P+ + PP K P Q + P
Sbjct: 142 EGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPP 198
Score = 37.0 bits (84), Expect = 0.040
Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 9 PGAGRGRSRGLGRGGGGPEG----GGFPNGAGPAERARHQPPQPKAPGFLQ-PPPLRQPR 63
P G +S+G G PEG GG + P + + P P+ Q PPP
Sbjct: 124 PPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKP 183
Query: 64 TTPPPGAQCEVPASPQRPSRP-GALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQ 117
PPP + P RP +P G P+ + PP K P+ KPQ
Sbjct: 184 EGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGK-PEGPPSQGGNKPQ 237
Score = 35.4 bits (80), Expect = 0.12
Identities = 35/124 (28%), Positives = 46/124 (37%), Gaps = 16/124 (12%)
Query: 9 PGAGRGRS-RGLGRGGGGPEGGGFPNGAGP--AERARHQPPQPKAP------GFLQ---P 56
PG GR +G + G P G P G P +++ PP+P P G Q P
Sbjct: 54 PGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGP 113
Query: 57 PPLRQPRTTPPPGAQCEVPASPQRPSRP-GALPEQTRPLRAPPSSQDK---IPQQNSESA 112
PP PPP + P RP +P G P+ + PP K P Q +
Sbjct: 114 PPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQS 173
Query: 113 MAKP 116
P
Sbjct: 174 QGPP 177
Score = 34.3 bits (77), Expect = 0.26
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 15/108 (13%)
Query: 9 PGAGRGRSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFL-----QPPPLRQPR 63
P G +S+G G PEG P G ++ +P +P+ P Q PP +
Sbjct: 187 PPQGGNQSQGPPPRPGKPEGPP-PQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGK 245
Query: 64 TTPPPGAQCEVPASPQRPSR------PGALPEQTRPLRAPPSSQDKIP 105
PP + P P P R PG P+Q P PP+ + + P
Sbjct: 246 PQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLP---PPAGKPQGP 290
Score = 32.7 bits (73), Expect = 0.75
Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 23 GGGPEGGGFPNGAGPAE-RARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRP 81
G P+GG P P + +PPQ PP +P PP G + P RP
Sbjct: 38 GRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGN-QSQGPPPRP 96
Query: 82 SRP-GALPEQTRPLRAPPSSQDK---IPQQNSESAMAKP 116
+P G P+ + PP K P Q + P
Sbjct: 97 GKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPP 135
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 45.8 bits (107), Expect = 9e-05
Identities = 24/72 (33%), Positives = 28/72 (38%)
Query: 45 PPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKI 104
PP P P PPPL P + PP P P PS P P PL APP
Sbjct: 1474 PPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPPPPPAAAPLAAPPEEPAAP 1533
Query: 105 PQQNSESAMAKP 116
++ E +P
Sbjct: 1534 SPEDPELPDTRP 1545
Score = 39.3 bits (90), Expect = 0.008
Identities = 42/144 (29%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 23 GGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPR-----TTPPPGAQCEVPAS 77
GGG G P G GPA+ ++P P P PPP P + A +S
Sbjct: 210 GGGVLG---PAGLGPAQTPPYRPGPPDPP----PPPRHLPTQFNLLASSSAAAAAAEQSS 262
Query: 78 PQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYP 137
PQ + GA P P RA P QD + + A A+P P + ++ YP
Sbjct: 263 PQLYNFSGAAPGPPPPERALP-RQDTVIKHYQRPASAQPPPPPPPAHALQHYLSCGGSYP 321
Query: 138 S-GYSSSYTESYEDGCEDYPTLSE 160
S G+ ++ S G E P E
Sbjct: 322 SMGHRANLACSPLGGGEPSPGAGE 345
Score = 34.7 bits (78), Expect = 0.20
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 17/89 (19%)
Query: 38 AERARHQPPQP-KAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSRPGALPEQTRPLRA 96
A + H+PP P + G + P + PPP A PA P +P PE+T
Sbjct: 1663 ARKPWHRPPVPVRRSGQAKNPVSAGGSSAPPPKA----PAPPPKPE----TPEKT----- 1709
Query: 97 PPSSQDKIPQQNSESAMAKPQVVVAPVLM 125
+ +K P+Q E+AM +P P L+
Sbjct: 1710 ---TSEKPPEQTPETAMPEPPAPEKPSLL 1735
Score = 33.5 bits (75), Expect = 0.44
Identities = 31/128 (24%), Positives = 37/128 (28%), Gaps = 18/128 (14%)
Query: 25 GPEGGGFPNGA--GPAERARHQPPQPKAPGFLQ----------------PPPLRQPRTTP 66
GP+ P+G PA PP P P PPP P+ P
Sbjct: 1412 GPKDTSTPDGPPLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPTPQPQP 1471
Query: 67 PPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMS 126
PP PA P P P P PP +P A + P +
Sbjct: 1472 PPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPPPPPAAAPLAAPPEEPA 1531
Query: 127 KLSVNAPE 134
S PE
Sbjct: 1532 APSPEDPE 1539
Score = 30.8 bits (68), Expect = 2.8
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 21/86 (24%)
Query: 4 GFDRAPGAGR-------GRSRGLGRGGGGPE--GGGFPNGAGPAERARHQPPQPK----- 49
G + +PGAG G + G GPE GGG G G R Q P K
Sbjct: 336 GGEPSPGAGEPSKAGPSGATAGASGRATGPEAAGGGGAGGGGGGYRPIIQSPGYKTGKGG 395
Query: 50 ----APGFLQPPPLRQPRTTPPPGAQ 71
A G +PPP PR+T P Q
Sbjct: 396 YGAAAGGATRPPP---PRSTATPKCQ 418
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 45.4 bits (106), Expect = 1e-04
Identities = 31/87 (35%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 24 GGPEGGGFPNGAGPAERA--RHQPPQPKAPGFLQP---PPLRQPRTTPPPGAQCEVPASP 78
G P G P+ A AE A PP P PG P PP P+ P PG+ P P
Sbjct: 520 GVPTGSPSPDLAPAAEPAPGAAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGS----PEPP 575
Query: 79 QRPSRPGALPEQTRPLRAPPSSQDKIP 105
P PG LP P PP + +P
Sbjct: 576 PAPPLPGDLPPPPPPPPPPPGTDGPVP 602
Score = 41.2 bits (95), Expect = 0.002
Identities = 23/57 (40%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 32 PNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPSRPGALP 88
P A P + PP P PG L PPP P PPPG VP P P P P
Sbjct: 562 PPQAPPLPGSPEPPPAPPLPGDLPPPP---PPPPPPPGTDGPVPPPPPPPPPPPGGP 615
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 45.1 bits (105), Expect = 1e-04
Identities = 40/152 (26%), Positives = 58/152 (38%), Gaps = 29/152 (19%)
Query: 9 PGAGRG--RSRGLGRGGGGPEGGGFPNGAGPA-------------ERARHQPPQPKAPGF 53
PG RG ++RG G GGGG GGF G + ++ +AP
Sbjct: 535 PGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYSQNRWGNNNRDNNNSNNRGSYNRAPQ- 593
Query: 54 LQPPPLRQPRTTPPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAM 113
QPPP + P PPP Q P P P + P + + IP ++ ++
Sbjct: 594 QQPPPQQPPPPQPPP---------QQPPPPPSYSPARNPPGASTYNKNSNIPGSSANTST 644
Query: 114 AKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYT 145
V+ + S + P + GYS YT
Sbjct: 645 P----TVSSYSPPQPSYSQPPYNQGGYSQGYT 672
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 45.1 bits (105), Expect = 1e-04
Identities = 40/152 (26%), Positives = 58/152 (38%), Gaps = 29/152 (19%)
Query: 9 PGAGRG--RSRGLGRGGGGPEGGGFPNGAGPA-------------ERARHQPPQPKAPGF 53
PG RG ++RG G GGGG GGF G + ++ +AP
Sbjct: 635 PGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYSQNRWGNNNRDNNNSNNRGSYNRAPQ- 693
Query: 54 LQPPPLRQPRTTPPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAM 113
QPPP + P PPP Q P P P + P + + IP ++ ++
Sbjct: 694 QQPPPQQPPPPQPPP---------QQPPPPPSYSPARNPPGASTYNKNSNIPGSSANTST 744
Query: 114 AKPQVVVAPVLMSKLSVNAPEFYPSGYSSSYT 145
V+ + S + P + GYS YT
Sbjct: 745 P----TVSSYSPPQPSYSQPPYNQGGYSQGYT 772
>gi|197245373 proline rich 22 isoform 1 [Homo sapiens]
Length = 422
Score = 44.3 bits (103), Expect = 2e-04
Identities = 39/128 (30%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Query: 5 FDRAPGAGRGRSRGLGRGGGGPEGGGFPNGAGPAERAR-HQPPQPKAPGFLQPPPLRQPR 63
+ +APG + G GPE GF AGPA PP + P L PPP P+
Sbjct: 133 YQQAPGGPQFLLPYFPPEGPGPEALGFVGDAGPAAFVELPLPPLEEGPAPLPPPP---PK 189
Query: 64 TTPPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQD-KIPQQNSESAMAKPQVVVAP 122
PP +PA P P P A L P + P + + + A+P V + P
Sbjct: 190 ENKPPPVLITLPAEPTLP--PDAYSHLQGHLGHFPGPEPLAFPVKELQGSGARPGVPLYP 247
Query: 123 VLMSKLSV 130
+S+L V
Sbjct: 248 PGLSELKV 255
>gi|23503299 proline rich 22 isoform 2 [Homo sapiens]
Length = 420
Score = 44.3 bits (103), Expect = 2e-04
Identities = 39/128 (30%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Query: 5 FDRAPGAGRGRSRGLGRGGGGPEGGGFPNGAGPAERAR-HQPPQPKAPGFLQPPPLRQPR 63
+ +APG + G GPE GF AGPA PP + P L PPP P+
Sbjct: 131 YQQAPGGPQFLLPYFPPEGPGPEALGFVGDAGPAAFVELPLPPLEEGPAPLPPPP---PK 187
Query: 64 TTPPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQD-KIPQQNSESAMAKPQVVVAP 122
PP +PA P P P A L P + P + + + A+P V + P
Sbjct: 188 ENKPPPVLITLPAEPTLP--PDAYSHLQGHLGHFPGPEPLAFPVKELQGSGARPGVPLYP 245
Query: 123 VLMSKLSV 130
+S+L V
Sbjct: 246 PGLSELKV 253
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 44.3 bits (103), Expect = 2e-04
Identities = 40/118 (33%), Positives = 45/118 (38%), Gaps = 22/118 (18%)
Query: 10 GAGRGRSRGLGRGGG---GPEGGGFPNGAGPAERARHQ----------PPQPKAPGFLQP 56
G GRGR G GG GP G G P PA + + PP P PG + P
Sbjct: 201 GRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLP 260
Query: 57 PPLRQP-----RTTPP---PGAQC-EVPASPQRPSRPGALPEQTRPLRAPPSSQDKIP 105
PPL P R PP PG + P P P P +P P PP Q P
Sbjct: 261 PPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPP 318
Score = 38.1 bits (87), Expect = 0.018
Identities = 33/97 (34%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 20 GRGGGGPEGG----GFPNGAGPAER------ARHQPPQPKAPGFLQPPPLRQPRTTPPPG 69
G G GP GG FP G R + P P PG PPP +T P P
Sbjct: 182 GEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGG-PPPPFPAGQTPPRPP 240
Query: 70 AQCEVPASPQRPSRPG-ALPEQTRPLRAPPSSQDKIP 105
P P P PG LP PL PP+ D+ P
Sbjct: 241 LGPPGPPGPPGPPPPGQVLPP---PLAGPPNRGDRPP 274
Score = 33.5 bits (75), Expect = 0.44
Identities = 30/97 (30%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 20 GRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPL-----RQPRTTPPPGAQCEV 74
G+ G P G P G P PP P P PPP R P PP
Sbjct: 281 GQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPP 340
Query: 75 PASPQRPSRPGALP--EQTRPLRAPPSSQDKIPQQNS 109
P P P PGA P P PP + +P +S
Sbjct: 341 PHLPGPP--PGAPPPAPHVNPAFFPPPTNSGMPTSDS 375
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 44.3 bits (103), Expect = 2e-04
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 21/115 (18%)
Query: 23 GGGPEGGGFPNGAGPAERARHQPPQ------PKAP-GFLQPPPLR---QPRTTPPP---- 68
G P+GG P G P + + PPQ P++P G Q PP + QP+ PPP
Sbjct: 59 GPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKP 118
Query: 69 -------GAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKP 116
G + + P P +P P +++R R+PP P Q P
Sbjct: 119 QGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPP 173
Score = 43.9 bits (102), Expect = 3e-04
Identities = 37/112 (33%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 9 PGAGRGRSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLR---QPRTT 65
PG +G G GP G P G P P P PG Q PP + QP+
Sbjct: 115 PGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSP--PGKPQGPPPQGGNQPQGP 172
Query: 66 PPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQ 117
PPP + + P PQ +P P +P + PP DK ++S+S KPQ
Sbjct: 173 PPPPGKPQGP-PPQGGKKPQGPPPPGKP-QGPPPQGDK--SRSSQSPPGKPQ 220
Score = 43.9 bits (102), Expect = 3e-04
Identities = 36/127 (28%), Positives = 47/127 (37%), Gaps = 25/127 (19%)
Query: 9 PGAGRGRSRGLGRGGGGPEGGGFPNGAGPA---ERARHQPP------------QPKAPGF 53
PG +G G+ GP G P G P R+ PP QP+ P
Sbjct: 176 PGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGP-- 233
Query: 54 LQPPPLRQPRTTPPPGAQCEVPASPQRPSRPGALPEQ----TRPLRAPPSSQDKIPQQNS 109
PPP +P+ PP G P P P +P P Q ++ R+PP PQQ
Sbjct: 234 --PPPPGKPQGPPPQGGN--KPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEG 289
Query: 110 ESAMAKP 116
+ P
Sbjct: 290 NNPQGPP 296
Score = 42.7 bits (99), Expect = 7e-04
Identities = 37/112 (33%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 9 PGAGRGRSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLR---QPRTT 65
PG +G G GP G P G P P P PG Q PP + QP+
Sbjct: 54 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSP--PGKPQGPPPQGGNQPQGP 111
Query: 66 PPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQ 117
PPP + + P PQ +RP P +P + PP DK ++ S KPQ
Sbjct: 112 PPPPGKPQGP-PPQGGNRPQGPPPPGKP-QGPPPQGDK--SRSPRSPPGKPQ 159
Score = 38.9 bits (89), Expect = 0.010
Identities = 30/96 (31%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 23 GGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCEVPASPQRPS 82
G P+GG P G P PP PPP +P+ PP G + SP P
Sbjct: 160 GPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSP--PG 217
Query: 83 RP-GALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQ 117
+P G P+ + PP K PQ KPQ
Sbjct: 218 KPQGPPPQGGNQPQGPPPPPGK-PQGPPPQGGNKPQ 252
Score = 38.5 bits (88), Expect = 0.014
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 33 NGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGA-QCEVPASPQRPSRPGALPEQT 91
N GP+ + ++P P PPP +P+ PP G + + P P +P P +++
Sbjct: 35 NPQGPSPQGGNKPQGP-------PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKS 87
Query: 92 RPLRAPPSSQDKIPQQNSESAMAKP 116
R R+PP P Q P
Sbjct: 88 RSPRSPPGKPQGPPPQGGNQPQGPP 112
Score = 35.8 bits (81), Expect = 0.088
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 23 GGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPP-GAQCEVPASPQRP 81
G P+GG P G P PP PPP +P+ P G++ + SP P
Sbjct: 221 GPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSP--P 278
Query: 82 SRPGALPEQT-RPLRAPPSSQDKIPQQNSESAMAKPQ 117
+P P+Q + PP PQQ +PQ
Sbjct: 279 GKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 315
Score = 35.4 bits (80), Expect = 0.12
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 30 GFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGA-QCEVPASPQRPSRPGALP 88
G P G P + +QP P PPP +P+ PP G + + P P +P P
Sbjct: 156 GKPQGPPP--QGGNQPQGP-------PPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQG 206
Query: 89 EQTRPLRAPPSSQDKIPQQNSESAMAKP 116
+++R ++PP P Q P
Sbjct: 207 DKSRSSQSPPGKPQGPPPQGGNQPQGPP 234
Score = 30.8 bits (68), Expect = 2.8
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 18/97 (18%)
Query: 9 PGAGRGRSRGLGRGGGGPEGGGFPNG-----AGPAERARHQPPQPKAPGFLQ-------P 56
PG +G G GP G P G ++ AR P +P+ P + P
Sbjct: 237 PGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPP 296
Query: 57 PPL----RQPRTTPPPGAQCEVPASPQRPSRPGALPE 89
PP +QP+ PP Q + P P + RP P+
Sbjct: 297 PPAGGNPQQPQA--PPAGQPQGPPRPPQGGRPSRPPQ 331
Score = 30.4 bits (67), Expect = 3.7
Identities = 27/95 (28%), Positives = 35/95 (36%), Gaps = 26/95 (27%)
Query: 23 GGGPEGGGFPNGAGPAERARHQPPQPKA--------PGFLQPPPLRQ---PRTTPPPGA- 70
G P+GG P G P + + P Q + PG Q PP ++ P+ PPP
Sbjct: 242 GPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGG 301
Query: 71 --------QCEVPASPQRPSRPGALPEQTRPLRAP 97
P P RP P+ RP R P
Sbjct: 302 NPQQPQAPPAGQPQGPPRP------PQGGRPSRPP 330
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,716,001
Number of Sequences: 37866
Number of extensions: 1398709
Number of successful extensions: 15436
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 1034
Number of HSP's that attempted gapping in prelim test: 9232
Number of HSP's gapped (non-prelim): 4965
length of query: 479
length of database: 18,247,518
effective HSP length: 106
effective length of query: 373
effective length of database: 14,233,722
effective search space: 5309178306
effective search space used: 5309178306
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.