Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PAIP1 Sequence: fasta or formatted (400aa) NCBI GI: 33386693
Description:

poly(A) binding protein interacting protein 1 isoform 2

Referenced in:

Polyadenylation

Other entries for this name:
alt prot [479aa] poly(A) binding protein interacting protein 1 isoform 1
alt prot [367aa] poly(A) binding protein interacting protein 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         24           2
 C cysteine            1.8          7           1
 D aspartate           7.5         30           2
 E glutamate          10.5         42           2
 F phenylalanine       4.2         17           2
 G glycine             4.8         19           1
 H histidine           1.2          5           2
 I isoleucine          3.2         13           2
 K lysine              4.5         18           1
 L leucine            10.2         41           3
 M methionine          2.5         10           1
 N asparagine          4.8         19           1
 P proline             5.5         22           2
 Q glutamine           5.5         22           2
 R arginine            4.8         19           1
 S serine              7.0         28           3
 T threonine           5.5         22           2
 V valine              5.2         21           3
 W tryptophan          0.5          2           1
 Y tyrosine            4.8         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly(A) binding protein interacting protein 1 isofor... 
PAIP1                 0.980   poly(A) binding protein interacting protein 1 isofor...
LOC645139             0.961   PREDICTED: similar to poly(A) binding protein inter...
LOC645139             0.961   PREDICTED: similar to poly(A) binding protein inter...
LOC645139             0.961   PREDICTED: similar to poly(A) binding protein intera...
PAIP1                 0.916   poly(A) binding protein interacting protein 1 isofor...
EIF4G1                0.071   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.071   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.071   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.071   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.071   eukaryotic translation initiation factor 4 gamma, 1 ...
KIAA0427              0.064   hypothetical protein LOC9811 isoform 2 
KIAA0427              0.064   hypothetical protein LOC9811 isoform 1 
EIF4G3                0.055   eukaryotic translation initiation factor 4 gamma, 3 ...
EIF4G2                0.023   eukaryotic translation initiation factor 4 gamma, 2...
EIF4G2                0.023   eukaryotic translation initiation factor 4 gamma, 2 i...
KTN1                  0.013   kinectin 1 isoform b 
KTN1                  0.013   kinectin 1 isoform a 
KTN1                  0.013   kinectin 1 isoform c 
KTN1                  0.013   kinectin 1 isoform a 
CWC22                 0.011   CWC22 spliceosome-associated protein homolog 
INF2                  0.010   inverted formin 2 isoform 2 
INF2                  0.010   inverted formin 2 isoform 1 
CCDC79                0.010   coiled-coil domain containing 79 
ITPR3                 0.009   inositol 1,4,5-triphosphate receptor, type 3 
BAT3                  0.009   HLA-B associated transcript-3 isoform b 
BAT3                  0.009   HLA-B associated transcript-3 isoform b 
BAT3                  0.009   HLA-B associated transcript-3 isoform b 
BAT3                  0.009   HLA-B associated transcript-3 isoform a 
MIF4GD                0.009   MIF4G domain containing 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press