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Search of human proteins with 17402904
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo
sapiens]
(272 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo sa... 538 e-153
gi|187282992 hypothetical protein LOC392145 [Homo sapiens] 164 6e-41
gi|9506689 exosome component 4 [Homo sapiens] 107 1e-23
gi|47174864 exosome component Rrp46 [Homo sapiens] 64 2e-10
gi|188528628 polyribonucleotide nucleotidyltransferase 1 [Homo s... 43 3e-04
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 41 0.001
gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens] 38 0.008
gi|134019487 chromatin modifying protein 1A isoform 1 [Homo sapi... 37 0.014
gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo ... 37 0.018
gi|239753975 PREDICTED: hypothetical protein [Homo sapiens] 34 0.12
gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens] 34 0.12
gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo ... 34 0.16
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 33 0.27
gi|239751736 PREDICTED: hypothetical protein [Homo sapiens] 33 0.27
gi|239746237 PREDICTED: hypothetical protein XP_002343710 [Homo ... 33 0.27
gi|55741655 anoctamin 8 [Homo sapiens] 33 0.35
gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo... 33 0.35
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 33 0.35
gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo ... 33 0.35
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 33 0.35
gi|18466802 Ras and Rab interactor 2 [Homo sapiens] 33 0.35
gi|61102725 la related protein isoform 2 [Homo sapiens] 33 0.35
gi|5454106 TBP-related factor 10 [Homo sapiens] 32 0.45
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens] 32 0.59
gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo ... 32 0.59
gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens] 32 0.59
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 32 0.59
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 32 0.59
gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens] 32 0.59
gi|14993776 skeletal myosin light chain kinase [Homo sapiens] 32 0.59
>gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo
sapiens]
Length = 272
Score = 538 bits (1386), Expect = e-153
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 1 MPGDHRRIRGPEESQPPQLYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGT 60
MPGDHRRIRGPEESQPPQLYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGT
Sbjct: 1 MPGDHRRIRGPEESQPPQLYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGT 60
Query: 61 KVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEER 120
KVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEER
Sbjct: 61 KVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEER 120
Query: 121 ELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLV 180
ELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLV
Sbjct: 121 ELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLV 180
Query: 181 VGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEA 240
VGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEA
Sbjct: 181 VGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEA 240
Query: 241 VRLGLEGCQRLYPVLQQSLVRAARRRGAAAQP 272
VRLGLEGCQRLYPVLQQSLVRAARRRGAAAQP
Sbjct: 241 VRLGLEGCQRLYPVLQQSLVRAARRRGAAAQP 272
>gi|187282992 hypothetical protein LOC392145 [Homo sapiens]
Length = 174
Score = 164 bits (416), Expect = 6e-41
Identities = 93/154 (60%), Positives = 102/154 (66%), Gaps = 11/154 (7%)
Query: 78 GGGPAGAG--GEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALEPAVR 135
G GP P L+ LLCDFR AP GG EE E A+ LQEALEPA+
Sbjct: 27 GQGPVETNRLSSMPPTLKRGLLCDFRHAP---------TGGGEEPEPAMVLQEALEPAMC 77
Query: 136 LGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTW 195
L RYP QLE S LLLEDGGSALA L A LALA AG+EM DLVV CGL LAPG PTW
Sbjct: 78 LDRYPHVQLEASELLLEDGGSALATELNTAKLALAYAGMEMNDLVVSCGLGLAPGSVPTW 137
Query: 196 LLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSG 229
LLDP RLEEE A G+T+AL+P+LNQVA LL +G
Sbjct: 138 LLDPMRLEEEHTAPGVTLALLPMLNQVARLLAAG 171
>gi|9506689 exosome component 4 [Homo sapiens]
Length = 245
Score = 107 bits (266), Expect = 1e-23
Identities = 65/189 (34%), Positives = 94/189 (49%), Gaps = 14/189 (7%)
Query: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGR 95
LR + AR G+ +QA GSAY+E G TK L V GP + G P R
Sbjct: 22 LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPD----------RAL 71
Query: 96 LLCDFRRAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDG 154
+ C + A F+ G R+R P G + E+ L L++ E A+ +PR+Q+++ +L+
Sbjct: 72 VNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQAD 131
Query: 155 GSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVA 214
G AA + AA LA+ DAG+ M D V C G A L D + +EE L +A
Sbjct: 132 GGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTA---LADLSHVEEAAGGPQLALA 188
Query: 215 LMPVLNQVA 223
L+P Q+A
Sbjct: 189 LLPASGQIA 197
>gi|47174864 exosome component Rrp46 [Homo sapiens]
Length = 235
Score = 63.5 bits (153), Expect = 2e-10
Identities = 67/221 (30%), Positives = 92/221 (41%), Gaps = 25/221 (11%)
Query: 12 EESQPPQLYAADEEEAPGTRDP-TRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPR 70
EE+ A+ R P LR LLS+ GSA G T VL V GP
Sbjct: 3 EETHTDAKIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPA 62
Query: 71 QAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEAL 130
+ + + A LR ++ PG E+ L ++
Sbjct: 63 EVKVSKEIFNKA----TLEVILRPKI---------------GLPGVAEKSRERL-IRNTC 102
Query: 131 EPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPG 190
E V +PR + V ++ D GS LA L AA +AL DAGV M L CG++ A
Sbjct: 103 EAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALF--CGVACALD 160
Query: 191 PAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEG 231
T +LDPT +E+ A A LT AL V ++ L+ S +G
Sbjct: 161 SDGTLVLDPTSKQEKEARAVLTFALDSVERKL--LMSSTKG 199
>gi|188528628 polyribonucleotide nucleotidyltransferase 1 [Homo
sapiens]
Length = 783
Score = 42.7 bits (99), Expect = 3e-04
Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 25/173 (14%)
Query: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
RD T LR V + GSA + G T+VLC V+ G + +
Sbjct: 362 RDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIK--------SDQVIT 413
Query: 91 ALRG----RLLCDFRRAPFAGRRRRAPPGGCEEREL---ALALQEALEPAVRLGRYPRA- 142
A+ G + + P+A G REL ALA ++AL P + PR
Sbjct: 414 AINGIKDKNFMLHYEFPPYA-TNEIGKVTGLNRRELGHGALA-EKALYPVI-----PRDF 466
Query: 143 --QLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAP 193
+ V++ +LE GS+ A+ +LAL D+GV + V G + L P
Sbjct: 467 PFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDP 519
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 41.2 bits (95), Expect = 0.001
Identities = 43/128 (33%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 3 GDHR-RIRGPEESQPPQLYAADEEEAPGTRD-PTRLRPVY-ARAGLLSQAKGSAYLEAGG 59
G+ R R P+ + P+L EEAPG + P RP ARA L+ A + AGG
Sbjct: 1311 GEQRERSASPQRAARPRL-----EEAPGGQGRPEAGRPASEARAPGLAAADAADAARAGG 1365
Query: 60 TKVLCAVSGPRQAEGGERGGGP--AGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGC 117
+ A +G G P AG GG AL R P G R PPGG
Sbjct: 1366 KEAPRAAAGSELCRREGPGAAPAFAGPGGGGSGALEAEGRAGARAGPRPGPR---PPGGA 1422
Query: 118 EERELALA 125
R+ A+A
Sbjct: 1423 PARKAAVA 1430
>gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]
Length = 403
Score = 38.1 bits (87), Expect = 0.008
Identities = 49/156 (31%), Positives = 61/156 (39%), Gaps = 40/156 (25%)
Query: 4 DHRRIRGPEESQPPQLYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVL 63
+ R RG + PP AA EEA G R+ V L++ KG
Sbjct: 8 EEERKRGRPQLLPPARPAARGEEADGGREKMGWAQVVKN---LAEKKGE----------F 54
Query: 64 CAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGR-----RRRAPPGGCE 118
PR+ E GGG AG GG PA L L DF P AGR RRR P G
Sbjct: 55 REPRPPRREEESGGGGGSAGLGG--PAGLAAPDLGDF---PPAGRGDPKGRRRDPAG--- 106
Query: 119 ERELALALQEALEP-----AVRLGRYPRAQLEVSAL 149
EA++P A GR +A+ +A+
Sbjct: 107 ---------EAVDPRKKKGAAEAGRRKKAEAAAAAM 133
>gi|134019487 chromatin modifying protein 1A isoform 1 [Homo
sapiens]
Length = 240
Score = 37.4 bits (85), Expect = 0.014
Identities = 50/163 (30%), Positives = 62/163 (38%), Gaps = 25/163 (15%)
Query: 3 GDHRRIRGPEESQPPQLYAADEEEAPGTRDPTRLRPVYARA-GLLSQAK--------GSA 53
G RR G + + D+E PG + P + + A GLLS + G
Sbjct: 59 GVPRRRSGLQGADSCDYEGGDQEYGPGDQSPGQGPEHHGPAEGLLSDGQVRAAGAEPGRP 118
Query: 54 YLEAGGTKVL------CAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAG 107
Y+ GG L A +G + RG P GAG PAA RGRL G
Sbjct: 119 YIGDGGLHELGHHPDHAAGAGGQPHHADRRGEWPGGAGPAQPAA-RGRLC--------RG 169
Query: 108 RRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALL 150
R A PGG E+ L+E P PR LE S L
Sbjct: 170 RELCAQPGGPAVTEVG-RLEELAVPRRCAPPLPRDVLEGSCPL 211
>gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo
sapiens]
Length = 359
Score = 37.0 bits (84), Expect = 0.018
Identities = 61/218 (27%), Positives = 74/218 (33%), Gaps = 42/218 (19%)
Query: 11 PEESQPPQLYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPR 70
PE +QPP AA P R P +R + R ++ VL V PR
Sbjct: 146 PEAAQPPSRPAAQPPSRPAFRSPRPVRGPHPRRAVV-------------VAVLFGVQAPR 192
Query: 71 Q--AEGGERGGGPAGAGGEAPAALRGRLLCDFRRA-----PFAGRRRRAPPGG------- 116
+ AEGG R G G AP RG LL A P GR PP G
Sbjct: 193 RDVAEGGLRRDG--RRPGLAPQRGRGGLLLVVLHAATVQRPRLGRGPSRPPRGPVGVCRP 250
Query: 117 --CEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGV 174
+ + LA +L RL A A GG+ L ++L A L L
Sbjct: 251 QVAQRQRLARVCVRSLPGNRRL-----ATRSCPAAFPLQGGATLPSSLPAPRLHLGSL-- 303
Query: 175 EMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLT 212
L G + A T P L A A LT
Sbjct: 304 ----LPSSSGGARLGDAAGTTHFQPAHLSHAAAPASLT 337
>gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 389
Score = 34.3 bits (77), Expect = 0.12
Identities = 60/218 (27%), Positives = 72/218 (33%), Gaps = 42/218 (19%)
Query: 11 PEESQPPQLYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPR 70
P QPP AA P R P +R + R ++ VL V PR
Sbjct: 176 PPRPQPPSRPAAQPPSRPAFRSPRPVRGPHPRRAVV-------------VAVLFGVQAPR 222
Query: 71 Q--AEGGERGGGPAGAGGEAPAALRGRLLCDFRRA-----PFAGRRRRAPPGG------- 116
+ AEGG R G G AP RG LL A P GR PP G
Sbjct: 223 RDVAEGGLRRDG--RRPGLAPQRGRGGLLLVVLHAATVQRPRLGRGPSRPPRGPVGVCRP 280
Query: 117 --CEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGV 174
+ + LA +L RL A A GG+ L ++L A L L
Sbjct: 281 QVAQRQRLARVCVRSLPGNRRL-----ATRSCPAAFPLQGGATLPSSLPAPRLHLGSL-- 333
Query: 175 EMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLT 212
L G + A T P L A A LT
Sbjct: 334 ----LPSSSGGARLGDAAGTTHFQPAHLSHAAAPASLT 367
>gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens]
Length = 935
Score = 34.3 bits (77), Expect = 0.12
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 182 GCGLSLAPGPAPTWLLDPTRLEEERAAAG--LTVALMPVLNQVAGLLGSGEGGLTESWAE 239
GCG +L P P P L + EE AAG L L L + G + G G ES E
Sbjct: 812 GCGAALGPVPPPGQPLLGSEAEEALEAAGRFLLPGLEEELEEAVGRIHLGPQGGPESVGE 871
Query: 240 AVRLG 244
RLG
Sbjct: 872 VFRLG 876
>gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo
sapiens]
Length = 909
Score = 33.9 bits (76), Expect = 0.16
Identities = 42/151 (27%), Positives = 54/151 (35%), Gaps = 24/151 (15%)
Query: 8 IRGPEESQPPQLYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVS 67
+RGP S+P + A E P +P V +A Q + E T+ C ++
Sbjct: 719 VRGPPTSRPARAQGAQESPLPAPSEPP--EAVEGKASPREQGE-----EGAPTQPCCGLA 771
Query: 68 GPRQA----EGGERGGGPAGAGGE------APAALRGRLLCDFRRAPFAGRRRRA----P 113
G QA + R G P G G+ P+ L RA G A
Sbjct: 772 GGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPGGAHAAGASIS 831
Query: 114 PGGCEERELALALQEALEPAVRLGRYPRAQL 144
P G E RE L E P R G R QL
Sbjct: 832 PAGPEHRE---DLTETQRPCPRSGALCRPQL 859
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 33.1 bits (74), Expect = 0.27
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 22 ADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGP 81
A+EE A G +DP+R R + R L S + +A AGGT+ + G +EG RG G
Sbjct: 32 AEEEGAGGRQDPSR-RSIRLRP-LPSPSPSAA---AGGTESRSSALGAADSEGPARGAGK 86
Query: 82 AGAGGE 87
+ G+
Sbjct: 87 SSTNGD 92
>gi|239751736 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 33.1 bits (74), Expect = 0.27
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 13/62 (20%)
Query: 64 CAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELA 123
C+ S + + GG R GG A +G + PAA R A RR+R PG REL
Sbjct: 144 CSSSSRKPSAGGGRDGGVAVSGRDQPAA----------RTMLAARRQRLGPG---RRELL 190
Query: 124 LA 125
+A
Sbjct: 191 MA 192
>gi|239746237 PREDICTED: hypothetical protein XP_002343710 [Homo
sapiens]
Length = 261
Score = 33.1 bits (74), Expect = 0.27
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 13/62 (20%)
Query: 64 CAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELA 123
C+ S + + GG R GG A +G + PAA R A RR+R PG REL
Sbjct: 144 CSSSSRKPSAGGGRDGGVAVSGRDQPAA----------RTMLAARRQRLGPG---RRELL 190
Query: 124 LA 125
+A
Sbjct: 191 MA 192
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 32.7 bits (73), Expect = 0.35
Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 69 PRQAE--GGERGGGPAGAGGE--------APAALRGRLLCDFRRAPFAGRRRRAPPGGCE 118
PR+ E E GGG +G GG AP L + RRA G PPGG E
Sbjct: 523 PRRLEPQADEGGGGGSGGGGRRCLSGGCGAPEEEEEAALVERRRAGEGGEEGDGPPGGKE 582
Query: 119 ERE 121
E E
Sbjct: 583 EDE 585
>gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo
sapiens]
Length = 738
Score = 32.7 bits (73), Expect = 0.35
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 26 EAPGTRDPTRLRPVYARAGLLSQAKGS---------AYLEAGGTKVLCAVSGPRQAEGGE 76
E P +P RL PV S+ GS A L G +L V R+ G
Sbjct: 13 EPPSPAEPGRLLPVACVWAAASRVPGSLSPFTGLRPARLWGAGPALLWGVGAARRWRSGC 72
Query: 77 RGGGPAGAGGEAPAALRGRLLCDFRRAP 104
RGGGP + G A RLL + R P
Sbjct: 73 RGGGPGASRGVLGLA---RLLGLWARGP 97
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 32.7 bits (73), Expect = 0.35
Identities = 64/239 (26%), Positives = 81/239 (33%), Gaps = 42/239 (17%)
Query: 64 CAVSGPRQAEGGERGGGPAG-----AGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCE 118
C PR+ GG GGG G GG A A ++ AP A R G
Sbjct: 607 CWPRRPRRRHGGGGGGGGPGLQDLLGGGHAGGAHGHVVVAPAAAAPTAREGRAGRHG--- 663
Query: 119 ERELALALQEALEPAVRLGRYPRAQLEVSALL----LEDGGSALAAALTAAALALADAGV 174
+A+ P V G A L+VS +L + G A AA A + G
Sbjct: 664 --HVAVVC-----PQVAAGAPVGADLDVSVVLWVGVVGHLGRGRGAGRAEAARAAREGGP 716
Query: 175 EMYDLVVGCGLSLAPGPAPTW-------LLDPT-----RLEEERAAAGLTVALMPVLNQV 222
+ L P P W L P+ R+ + A TVA PV V
Sbjct: 717 HQGVFIQRGRGGLGHRPLPGWRGQGVGPLAQPSVQVLGRVPRDPAVGAATVAQGPVHGHV 776
Query: 223 -----AGLLGSGEGGLTESWAEAVRLGLEGCQRLY--PVLQQ----SLVRAARRRGAAA 270
A SG G L + + EG Q + VL Q + AR GAAA
Sbjct: 777 PVELTAAAAVSGRGRLRDGLGRVASVAAEGAQVAWAGAVLVQGHEAGVAGGARGGGAAA 835
Score = 28.1 bits (61), Expect = 8.5
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 58 GGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAA 91
GG V V G + GG+R GG G G A AA
Sbjct: 250 GGRVVALGVVGEGRGHGGDRRGGGEGLGTVAAAA 283
>gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo
sapiens]
Length = 193
Score = 32.7 bits (73), Expect = 0.35
Identities = 26/65 (40%), Positives = 28/65 (43%), Gaps = 20/65 (30%)
Query: 74 GGERGGG------PAGAGGEAPAALRGRL------------LCDFRRAPFAGRRRRAPPG 115
GGER G PAGA +P A RGR CD R P +R APPG
Sbjct: 124 GGERRGERRAPPRPAGAPRGSPMAARGRARGEAEPPALGAGACDSRNQP--DSQRTAPPG 181
Query: 116 GCEER 120
G ER
Sbjct: 182 GGAER 186
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 32.7 bits (73), Expect = 0.35
Identities = 64/239 (26%), Positives = 81/239 (33%), Gaps = 42/239 (17%)
Query: 64 CAVSGPRQAEGGERGGGPAG-----AGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCE 118
C PR+ GG GGG G GG A A ++ AP A R G
Sbjct: 607 CWPRRPRRRHGGGGGGGGPGLQDLLGGGHAGGAHGHVVVAPAAAAPTAREGRAGRHG--- 663
Query: 119 ERELALALQEALEPAVRLGRYPRAQLEVSALL----LEDGGSALAAALTAAALALADAGV 174
+A+ P V G A L+VS +L + G A AA A + G
Sbjct: 664 --HVAVVC-----PQVAAGAPVGADLDVSVVLWVGVVGHLGRGRGAGRAEAARAAREGGP 716
Query: 175 EMYDLVVGCGLSLAPGPAPTW-------LLDPT-----RLEEERAAAGLTVALMPVLNQV 222
+ L P P W L P+ R+ + A TVA PV V
Sbjct: 717 HQGVFIQRGRGGLGHRPLPGWRGQGVGPLAQPSVQVLGRVPRDPAVGAATVAQGPVHGHV 776
Query: 223 -----AGLLGSGEGGLTESWAEAVRLGLEGCQRLY--PVLQQ----SLVRAARRRGAAA 270
A SG G L + + EG Q + VL Q + AR GAAA
Sbjct: 777 PVELTAAAAVSGRGRLRDGLGRVASVAAEGAQVAWAGAVLVQGHEAGVAGGARGGGAAA 835
Score = 28.1 bits (61), Expect = 8.5
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 58 GGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAA 91
GG V V G + GG+R GG G G A AA
Sbjct: 250 GGRVVALGVVGEGRGHGGDRRGGGEGLGTVAAAA 283
>gi|18466802 Ras and Rab interactor 2 [Homo sapiens]
Length = 895
Score = 32.7 bits (73), Expect = 0.35
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 28 PGTRDPTRLRPVYARAGLLSQAKGSAYLEA-GGTKVLCAVSGPRQAEGGERGGGPAGA-G 85
PGT+ PT + P + K +++LEA GG K L SG R G E G AG+ G
Sbjct: 349 PGTK-PTPIPPPRLK-------KQASFLEAEGGAKTL---SGGRPGAGPELELGTAGSPG 397
Query: 86 GEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALEPAVRLGR 138
G P A G D RAP R P G +R +++ + ++ R
Sbjct: 398 GAPPEAAPG----DCTRAPPPSSESRPPCHGGRQRLSDMSISTSSSDSLEFDR 446
>gi|61102725 la related protein isoform 2 [Homo sapiens]
Length = 1096
Score = 32.7 bits (73), Expect = 0.35
Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 10 GPEESQPPQLYAADEEEAP-----GTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLC 64
G +PP E P G D + RP A + G E+ L
Sbjct: 23 GLVRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQERESPRPLQLP 82
Query: 65 AVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAP 104
GP ++G E GG P GG A AA GR DF AP
Sbjct: 83 GAEGPAISDGEEGGGEPGAGGGAAGAAGAGRR--DFVEAP 120
>gi|5454106 TBP-related factor 10 [Homo sapiens]
Length = 218
Score = 32.3 bits (72), Expect = 0.45
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 17 PQLYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAV--SGPRQAEG 74
P+ A APG P P + ++ K S AGG A +GP A
Sbjct: 10 PEAAPASAASAPGPAPPVSA-PAALPSSTAAENKASPAGTAGGPGAGAAAGGTGPLAARA 68
Query: 75 GE----RGGGPAGAGGEAP 89
GE RG P AGG AP
Sbjct: 69 GEPAERRGAAPVSAGGAAP 87
>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 528
Score = 32.0 bits (71), Expect = 0.59
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 28/124 (22%)
Query: 48 QAKGSAYLEAGGTKVLCAV------------SGP-RQAEGGERGGGPAGAGGEA-PAALR 93
+ KG+ + AGG + L + GP R+ G R GG G G + P A +
Sbjct: 396 KGKGNYWTFAGGCESLLDLFENGNYRRRRRRRGPKREGPRGPRAGGAQGPSGPSEPPAAQ 455
Query: 94 GRLLCDFRRAPFAGRR---RRAPPGGCEERELALALQEALEP-----------AVRLGRY 139
GRL D GR APPG R+L ++ L + GRY
Sbjct: 456 GRLAPDSAGEGAPGREPPASPAPPGKEHPRDLKFSIDYILSSPDPFPGLKPPCLAQEGRY 515
Query: 140 PRAQ 143
PR +
Sbjct: 516 PRLE 519
>gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo
sapiens]
Length = 591
Score = 32.0 bits (71), Expect = 0.59
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 28/124 (22%)
Query: 48 QAKGSAYLEAGGTKVLCAV------------SGP-RQAEGGERGGGPAGAGGEA-PAALR 93
+ KG+ + AGG + L + GP R+ G R GG G G + P A +
Sbjct: 459 KGKGNYWTFAGGCESLLDLFENGNYRRRRRRRGPKREGPRGPRAGGAQGPSGPSEPPAAQ 518
Query: 94 GRLLCDFRRAPFAGRR---RRAPPGGCEERELALALQEALEP-----------AVRLGRY 139
GRL D GR APPG R+L ++ L + GRY
Sbjct: 519 GRLAPDSAGEGAPGREPPASPAPPGKEHPRDLKFSIDYILSSPDPFPGLKPPCLAQEGRY 578
Query: 140 PRAQ 143
PR +
Sbjct: 579 PRLE 582
>gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 387
Score = 32.0 bits (71), Expect = 0.59
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 28/124 (22%)
Query: 48 QAKGSAYLEAGGTKVLCAV------------SGP-RQAEGGERGGGPAGAGGEA-PAALR 93
+ KG+ + AGG + L + GP R+ G R GG G G + P A +
Sbjct: 163 KGKGNYWTFAGGCESLLDLFENGNYRRRRRRRGPKREGPRGPRAGGAQGPSGPSEPPAAQ 222
Query: 94 GRLLCDFRRAPFAGRR---RRAPPGGCEERELALALQEALEP-----------AVRLGRY 139
GRL D GR APPG R+L ++ L + GRY
Sbjct: 223 GRLAPDSAGEGAPGREPPASPAPPGKEHPRDLKFSIDYILSSPDPFPGLKPPCLAQEGRY 282
Query: 140 PRAQ 143
PR +
Sbjct: 283 PRLE 286
>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform b [Homo sapiens]
Length = 373
Score = 32.0 bits (71), Expect = 0.59
Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 49 AKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
A GSA AGG GP A GG GGG G GG A A
Sbjct: 202 AAGSAAASAGGAGG-AGGGGPASAGGGGGGGGGGGGGGAAGA 242
>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform a [Homo sapiens]
Length = 403
Score = 32.0 bits (71), Expect = 0.59
Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 49 AKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
A GSA AGG GP A GG GGG G GG A A
Sbjct: 202 AAGSAAASAGGAGG-AGGGGPASAGGGGGGGGGGGGGGAAGA 242
>gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens]
Length = 391
Score = 32.0 bits (71), Expect = 0.59
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 58 GGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
GG + +SGP A GG GGG G GG A A
Sbjct: 14 GGAQAPTNLSGPAGAGGGGGGGGGGGGGGGAKA 46
>gi|14993776 skeletal myosin light chain kinase [Homo sapiens]
Length = 596
Score = 32.0 bits (71), Expect = 0.59
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 2 PGDHRRIRGPEESQPPQLYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTK 61
P + +GP +P AA ++ PG DP + L AK A + GT
Sbjct: 15 PSTDKAPKGPTGERP---LAAGKD--PGPPDPKKAPDPPT---LKKDAKAPASEKGDGTL 66
Query: 62 VLCAVSGPRQAEGGERGGGPAGAGGEAPAAL 92
+ S G+RGGGPA PAAL
Sbjct: 67 AQPSTSSQGPKGEGDRGGGPAEGSAGPPAAL 97
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,506,875
Number of Sequences: 37866
Number of extensions: 668256
Number of successful extensions: 4319
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 144
Number of HSP's that attempted gapping in prelim test: 4113
Number of HSP's gapped (non-prelim): 289
length of query: 272
length of database: 18,247,518
effective HSP length: 101
effective length of query: 171
effective length of database: 14,423,052
effective search space: 2466341892
effective search space used: 2466341892
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.