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Search of human proteins with 172072620
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|172072620 vesicle-associated membrane protein 2
(synaptobrevin 2) [Homo sapiens]
(116 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|172072620 vesicle-associated membrane protein 2 (synaptobrevi... 229 4e-61
gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo... 184 1e-47
gi|40549446 vesicle-associated membrane protein 1 isoform 2 [Hom... 177 2e-45
gi|9257251 vesicle-associated membrane protein 1 isoform 3 [Homo... 177 2e-45
gi|4759300 vesicle-associated membrane protein 3 [Homo sapiens] 140 2e-34
gi|42544207 vesicle-associated membrane protein 4 [Homo sapiens] 82 7e-17
gi|14043026 vesicle-associated membrane protein 8 [Homo sapiens] 75 9e-15
gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens] 64 3e-11
gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Ho... 58 2e-09
gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo... 58 2e-09
gi|94429050 SEC22 vesicle trafficking protein homolog B [Homo sa... 38 0.002
gi|71043876 undifferentiated embryonic cell transcription factor... 34 0.022
gi|116235472 SH3-domain GRB2-like (endophilin) interacting prote... 33 0.048
gi|5730120 YKT6 v-SNARE protein [Homo sapiens] 32 0.11
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 31 0.24
gi|169202389 PREDICTED: similar to mCG50504 [Homo sapiens] 31 0.24
gi|28557711 proline rich 15 [Homo sapiens] 31 0.24
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens] 30 0.31
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 30 0.41
gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens] 30 0.41
gi|82546824 forkhead box K1 [Homo sapiens] 30 0.41
gi|122937219 F-box protein 41 [Homo sapiens] 30 0.41
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 30 0.54
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 30 0.54
gi|24308458 Lix1 homolog (mouse) like [Homo sapiens] 30 0.54
gi|5031877 lamin B1 [Homo sapiens] 29 0.70
gi|239756085 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|239750614 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|239744921 PREDICTED: hypothetical protein XP_002343308 [Homo ... 29 0.70
gi|190886454 tumor specificity and mitosis phase-dependent expre... 29 0.70
>gi|172072620 vesicle-associated membrane protein 2 (synaptobrevin
2) [Homo sapiens]
Length = 116
Score = 229 bits (584), Expect = 4e-61
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 60
MSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL
Sbjct: 1 MSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 60
Query: 61 SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST 116
SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
Sbjct: 61 SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST 116
>gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo
sapiens]
Length = 118
Score = 184 bits (467), Expect = 1e-47
Identities = 91/117 (77%), Positives = 102/117 (87%), Gaps = 4/117 (3%)
Query: 4 TAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQK 59
+A PPA A GGPP PPPN+TSNRRLQQTQAQV+EVVDI+RVNVDKVLERDQK
Sbjct: 2 SAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQK 61
Query: 60 LSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST 116
LSELDDRADALQAGASQFE+SAAKLKRKYWWKN KMMI+LG ICAII+++I++YF T
Sbjct: 62 LSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT 118
>gi|40549446 vesicle-associated membrane protein 1 isoform 2 [Homo
sapiens]
Length = 117
Score = 177 bits (448), Expect = 2e-45
Identities = 88/112 (78%), Positives = 98/112 (87%), Gaps = 4/112 (3%)
Query: 4 TAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQK 59
+A PPA A GGPP PPPN+TSNRRLQQTQAQV+EVVDI+RVNVDKVLERDQK
Sbjct: 2 SAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQK 61
Query: 60 LSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIII 111
LSELDDRADALQAGASQFE+SAAKLKRKYWWKN KMMI+LG ICAII+++I+
Sbjct: 62 LSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV 113
>gi|9257251 vesicle-associated membrane protein 1 isoform 3 [Homo
sapiens]
Length = 116
Score = 177 bits (448), Expect = 2e-45
Identities = 88/112 (78%), Positives = 98/112 (87%), Gaps = 4/112 (3%)
Query: 4 TAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQK 59
+A PPA A GGPP PPPN+TSNRRLQQTQAQV+EVVDI+RVNVDKVLERDQK
Sbjct: 2 SAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQK 61
Query: 60 LSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIII 111
LSELDDRADALQAGASQFE+SAAKLKRKYWWKN KMMI+LG ICAII+++I+
Sbjct: 62 LSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV 113
>gi|4759300 vesicle-associated membrane protein 3 [Homo sapiens]
Length = 100
Score = 140 bits (354), Expect = 2e-34
Identities = 73/86 (84%), Positives = 76/86 (88%)
Query: 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 87
SNRRLQQTQ QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK
Sbjct: 11 SNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 70
Query: 88 YWWKNLKMMIILGVICAIILIIIIVY 113
YWWKN KM I + I +IIIIV+
Sbjct: 71 YWWKNCKMWAIGITVLVIFIIIIIVW 96
>gi|42544207 vesicle-associated membrane protein 4 [Homo sapiens]
Length = 141
Score = 82.4 bits (202), Expect = 7e-17
Identities = 36/98 (36%), Positives = 64/98 (65%), Gaps = 4/98 (4%)
Query: 15 GEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGA 74
G GP P N +++ Q QVDEV+D+M+ N+ KV+ER ++L EL D++++L A
Sbjct: 40 GPSGPRFGP----RNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNA 95
Query: 75 SQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIV 112
+ F + +L+R+ WW+ K+ I+ ++ AI+L++II+
Sbjct: 96 TAFSNRSKQLRRQMWWRGCKIKAIMALVAAILLLVIII 133
>gi|14043026 vesicle-associated membrane protein 8 [Homo sapiens]
Length = 100
Score = 75.5 bits (184), Expect = 9e-15
Identities = 35/100 (35%), Positives = 65/100 (65%), Gaps = 9/100 (9%)
Query: 14 AGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAG 73
A EGG N R++ Q++V+ V +IM NV+++L R + L L ++ + L+A
Sbjct: 4 ASEGG---------GNDRVRNLQSEVEGVKNIMTQNVERILARGENLEHLRNKTEDLEAT 54
Query: 74 ASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVY 113
+ F+T++ K+ RK+WWKN+KM++++ VI II++ I+++
Sbjct: 55 SEHFKTTSQKVARKFWWKNVKMIVLICVIVFIIILFIVLF 94
>gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens]
Length = 116
Score = 63.9 bits (154), Expect = 3e-11
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 32 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 91
L++ Q Q +EV +IMR N KVLER KL+EL R+D L +S F + L +K W+
Sbjct: 6 LERCQQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCWE 65
Query: 92 NLKMMIILGVICAIILIIIIV 112
N++ I +G++ +L+II++
Sbjct: 66 NIRYRICVGLVVVGVLLIILI 86
>gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Homo
sapiens]
Length = 179
Score = 57.8 bits (138), Expect = 2e-09
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
++ +TQAQVDE+ IM N+D V +R ++L L D+ + L + F+T++ L R
Sbjct: 84 KVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCM 143
Query: 91 KNLKMMIILGVICAIILIIIIV 112
KNLK+ II+ +I +I+ I IIV
Sbjct: 144 KNLKLTIII-IIVSIVFIYIIV 164
>gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo
sapiens]
Length = 220
Score = 57.8 bits (138), Expect = 2e-09
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
++ +TQAQVDE+ IM N+D V +R ++L L D+ + L + F+T++ L R
Sbjct: 125 KVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCM 184
Query: 91 KNLKMMIILGVICAIILIIIIV 112
KNLK+ II+ +I +I+ I IIV
Sbjct: 185 KNLKLTIII-IIVSIVFIYIIV 205
>gi|94429050 SEC22 vesicle trafficking protein homolog B [Homo
sapiens]
Length = 215
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 87
+ R L ++ +V IM N+++VL+R + LS LD +A+ L + + ++ A L
Sbjct: 131 ARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMH 190
Query: 88 YWWKNLKMMIILGVICAIILIIIIVY 113
+ L + A+ I++IVY
Sbjct: 191 STYAKLAAV-------AVFFIMLIVY 209
>gi|71043876 undifferentiated embryonic cell transcription factor 1
[Homo sapiens]
Length = 341
Score = 34.3 bits (77), Expect = 0.022
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 8 APPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRA 67
+PP P PPA PP+L N L QT + ++ +I+ D++L +Q + +L
Sbjct: 257 SPPGRPEDCAPPPAAPPSL--NTALLQTLGHLGDIANILGPLRDQLLTLNQHVEQLRGAF 314
Query: 68 DALQAGASQFETSAAKLKR 86
D + A F +A +R
Sbjct: 315 DQTVSLAVGFILGSAAAER 333
>gi|116235472 SH3-domain GRB2-like (endophilin) interacting protein
1 [Homo sapiens]
Length = 828
Score = 33.1 bits (74), Expect = 0.048
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 10 PAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDE 41
P P G GPP PP N+ S L++ Q +V E
Sbjct: 354 PPGPTGPPGPPGPPRNVLSPLNLEEVQKKVAE 385
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 2 SATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEV 42
S+ A A P P PP PPP S +L + V +V
Sbjct: 441 SSPARPATPLVPCRSTTPPPPPPRPPSRPKLPPGKPGVGDV 481
>gi|5730120 YKT6 v-SNARE protein [Homo sapiens]
Length = 198
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 32 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAK 83
+ + QA++DE I+ ++ +LER +KL +L +++ L + F +A K
Sbjct: 139 MTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARK 190
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 30.8 bits (68), Expect = 0.24
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 8 APPAAPAGEGGPPAPPP 24
APP P GGPP PPP
Sbjct: 276 APPPPPPSRGGPPPPPP 292
>gi|169202389 PREDICTED: similar to mCG50504 [Homo sapiens]
Length = 189
Score = 30.8 bits (68), Expect = 0.24
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 2 SATAATAPPAAPAGEGGPPAPPP 24
+ TAA AP PA PP+PPP
Sbjct: 148 ATTAAAAPQCGPASAAPPPSPPP 170
>gi|28557711 proline rich 15 [Homo sapiens]
Length = 129
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 3 ATAATAPPAAPA-GEGGPPAPP-PNLTSNRRLQQ 34
A PPA PA GE PPAPP P+ TS+ R Q
Sbjct: 27 AAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQ 60
>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
Length = 494
Score = 30.4 bits (67), Expect = 0.31
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 8 APPAA--PAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLS 61
APP+A PAG PP+PP + RRL + V D D + +RD LS
Sbjct: 411 APPSATLPAGAAAPPSPPFSFQLPRRLSDS-----PVFDAPPSPPDSLSDRDSYLS 461
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 3 ATAATAP-PAAPAGEGGPPAPPP 24
AT + P P P G GGPP PPP
Sbjct: 374 ATGRSGPLPPPPPGAGGPPMPPP 396
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 9 PPAAPAGEGGPPAPPPNLT 27
PP P G GGPP PPP T
Sbjct: 359 PP--PPGRGGPPPPPPPAT 375
>gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens]
Length = 434
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 3 ATAATAPPAAPAGEGGPPAPPPNLTS-----NRRLQQTQAQ 38
A A APP A PP PPP+LT + L QT AQ
Sbjct: 335 AGAPAAPPTNAAPPAAPPPPPPHLTPEITPLSAALAQTIAQ 375
>gi|82546824 forkhead box K1 [Homo sapiens]
Length = 733
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 2 SATAATAPPAAPAGEGGPPAPPP 24
+A A APP APA PP PPP
Sbjct: 32 AAFPAAAPPPAPAQPQPPPGPPP 54
>gi|122937219 F-box protein 41 [Homo sapiens]
Length = 936
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 3 ATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSE 62
+ A++A P G G P P P S +E + +++ + LE D++L
Sbjct: 223 SVASSACSTPPPGPGPGPCPGPASASPASPSPADVAYEEGLARLKIRALEKLEVDRRLER 282
Query: 63 LDDRADALQAGASQFETSAAKLKRK 87
L + + Q A Q A+L+RK
Sbjct: 283 LSEEVE--QKIAGQVGRLQAELERK 305
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 29.6 bits (65), Expect = 0.54
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 1 MSATAATAPPAAPAGEGGPPAPP 23
+SA A T PP+ P+ PPAPP
Sbjct: 556 LSAAAITVPPSVPSRAPVPPAPP 578
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 2 SATAATAPPAAPAGEGGPPAPPP 24
SA PP P G PP PPP
Sbjct: 675 SARIPPPPPPLPGSAGIPPPPPP 697
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 2 SATAATAPPAAPAGEGGPPAPPP 24
SA PP P G PP PPP
Sbjct: 688 SAGIPPPPPPLPGEAGMPPPPPP 710
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 29.6 bits (65), Expect = 0.54
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 1 MSATAATAPPAAPAGEGGPPAPP 23
+SA A T PP+ P+ PPAPP
Sbjct: 565 LSAAAITVPPSVPSRAPVPPAPP 587
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 2 SATAATAPPAAPAGEGGPPAPPP 24
SA PP P G PP PPP
Sbjct: 684 SARIPPPPPPLPGSAGIPPPPPP 706
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 2 SATAATAPPAAPAGEGGPPAPPP 24
SA PP P G PP PPP
Sbjct: 697 SAGIPPPPPPLPGEAGMPPPPPP 719
>gi|24308458 Lix1 homolog (mouse) like [Homo sapiens]
Length = 337
Score = 29.6 bits (65), Expect = 0.54
Identities = 15/23 (65%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 3 ATAATA-PPAAPAGEGGPPAPPP 24
A AATA PPA P PPAPPP
Sbjct: 31 AAAATATPPAGPPPAPPPPAPPP 53
>gi|5031877 lamin B1 [Homo sapiens]
Length = 586
Score = 29.3 bits (64), Expect = 0.70
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 3 ATAATAPPAAPAGEGGPPAP--PPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 60
ATA PP + GGP P P L+ RLQ+ + ++ E+ D + V +DKV + +
Sbjct: 2 ATATPVPPRMGSRAGGPTTPLSPTRLS---RLQEKE-ELRELNDRLAVYIDKVRSLETEN 57
Query: 61 SEL 63
S L
Sbjct: 58 SAL 60
>gi|239756085 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 29.3 bits (64), Expect = 0.70
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 2 SATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQ 38
SA + P + +G GP APP +L R L++ Q +
Sbjct: 125 SARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEE 161
>gi|239750614 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 29.3 bits (64), Expect = 0.70
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 2 SATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQ 38
SA + P + +G GP APP +L R L++ Q +
Sbjct: 125 SARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEE 161
>gi|239744921 PREDICTED: hypothetical protein XP_002343308 [Homo
sapiens]
Length = 165
Score = 29.3 bits (64), Expect = 0.70
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 2 SATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQ 38
SA + P + +G GP APP +L R L++ Q +
Sbjct: 125 SARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEE 161
>gi|190886454 tumor specificity and mitosis phase-dependent
expression protein [Homo sapiens]
Length = 394
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 5 AATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELD 64
AA A A P GPP P LTS Q + + + R+ +V E+ +++++L+
Sbjct: 308 AACASRALPPSSSGPPCPA--LTSTSPPVWQQQTILMLKEQNRLLTQEVTEKSERITQLE 365
Query: 65 DRADAL 70
AL
Sbjct: 366 QEKSAL 371
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,468,434
Number of Sequences: 37866
Number of extensions: 190521
Number of successful extensions: 4761
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 3935
Number of HSP's gapped (non-prelim): 911
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.