Guide to the Human Genome
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Name: PRR15 Sequence: fasta or formatted (129aa) NCBI GI: 28557711
Description:

proline rich 15

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         11           2
 C cysteine            0.0          0           0
 D aspartate           5.4          7           1
 E glutamate           7.0          9           2
 F phenylalanine       1.6          2           1
 G glycine            10.9         14           2
 H histidine           1.6          2           1
 I isoleucine          0.8          1           1
 K lysine              9.3         12           2
 L leucine             5.4          7           2
 M methionine          0.8          1           1
 N asparagine          3.1          4           1
 P proline            15.5         20           3
 Q glutamine           2.3          3           1
 R arginine            7.0          9           2
 S serine             12.4         16           3
 T threonine           3.1          4           1
 V valine              2.3          3           1
 W tryptophan          2.3          3           2
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline rich 15 
ATAD4                 0.068   ATPase family, AAA domain containing 4 
SETBP1                0.060   SET binding protein 1 isoform a 
MAP3K10               0.060   mitogen-activated protein kinase kinase kinase 10 [H...
DGKD                  0.056   diacylglycerol kinase, delta 130kDa isoform 2 
BAI1                  0.056   brain-specific angiogenesis inhibitor 1 precursor [...
WHAMM                 0.056   WAS protein homolog associated with actin, golgi me...
ZBED3                 0.056   zinc finger, BED-type containing 3 
RAPH1                 0.052   Ras association and pleckstrin homology domains 1 is...
ZFPM1                 0.052   zinc finger protein, multitype 1 
DIAPH1                0.048   diaphanous 1 isoform 2 
DIAPH1                0.048   diaphanous 1 isoform 1 
LOC100128398          0.048   PREDICTED: hypothetical protein 
LOC100128398          0.048   PREDICTED: hypothetical protein 
LOC100128398          0.048   PREDICTED: hypothetical protein 
HNRNPUL1              0.048   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
HNRNPUL1              0.048   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
LOC284297             0.048   hypothetical protein LOC284297 
RXRB                  0.048   retinoid X receptor, beta 
ADAMTSL4              0.048   thrombospondin repeat containing 1 isoform 1 
DIAPH2                0.048   diaphanous 2 isoform 12C 
DIAPH2                0.048   diaphanous 2 isoform 156 
ADAMTSL4              0.048   thrombospondin repeat containing 1 isoform 2 
CHD3                  0.048   chromodomain helicase DNA binding protein 3 isoform...
COL16A1               0.044   alpha 1 type XVI collagen precursor 
TBX2                  0.044   T-box 2 
MYO15A                0.044   myosin XV 
ATF7IP                0.044   activating transcription factor 7 interacting protei...
FBRSL1                0.044   fibrosin-like 1 
RBBP6                 0.044   retinoblastoma-binding protein 6 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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