Guide to the Human Genome
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Name: NARG1L Sequence: fasta or formatted (429aa) NCBI GI: 160707985
Description:

NMDA receptor regulated 1-like protein isoform 3

Referenced in:

Additional Protein Modifications
Tetratricopeptide Domains

Other entries for this name:
alt prot [864aa] NMDA receptor regulated 1-like protein isoform 1
alt prot [311aa] NMDA receptor regulated 1-like protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         21           2
 C cysteine            2.3         10           1
 D aspartate           4.0         17           1
 E glutamate           9.6         41           2
 F phenylalanine       3.7         16           2
 G glycine             3.5         15           1
 H histidine           1.6          7           1
 I isoleucine          5.6         24           2
 K lysine              9.6         41           2
 L leucine            14.9         64           2
 M methionine          2.1          9           1
 N asparagine          4.2         18           1
 P proline             4.0         17           2
 Q glutamine           5.4         23           2
 R arginine            4.9         21           2
 S serine              5.1         22           2
 T threonine           4.0         17           2
 V valine              3.5         15           1
 W tryptophan          0.9          4           1
 Y tyrosine            6.3         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NMDA receptor regulated 1-like protein isoform 3 [H... 
NARG1L                0.977   NMDA receptor regulated 1-like protein isoform 1 [Ho...
NARG1                 0.760   NMDA receptor regulated 1 
NARG1L                0.699   NMDA receptor regulated 1-like protein isoform 2 [Ho...
TTC37                 0.026   tetratricopeptide repeat domain 37 
TTC27                 0.021   tetratricopeptide repeat domain 27 
IFT88                 0.018   intraflagellar transport 88 homolog isoform 1 
IFT88                 0.018   intraflagellar transport 88 homolog isoform 2 
TMTC1                 0.014   transmembrane and tetratricopeptide repeat containin...
CDC27                 0.014   cell division cycle protein 27 isoform 1 
CDC27                 0.014   cell division cycle protein 27 isoform 2 
CDC23                 0.013   cell division cycle protein 23 
TRIP11                0.012   thyroid hormone receptor interactor 11 
PHLDB2                0.012   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.012   pleckstrin homology-like domain, family B, member 2...
STIP1                 0.011   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
CLIP1                 0.011   restin isoform b 
CLIP1                 0.011   restin isoform a 
MYH1                  0.011   myosin, heavy chain 1, skeletal muscle, adult [Homo...
ANP32E                0.011   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
MYH6                  0.011   myosin heavy chain 6 
SPAG1                 0.011   sperm associated antigen 1 
SPAG1                 0.011   sperm associated antigen 1 
SYNE2                 0.010   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.010   spectrin repeat containing, nuclear envelope 2 isof...
CGNL1                 0.010   cingulin-like 1 
PACSIN1               0.010   protein kinase C and casein kinase substrate in neur...
MYO5A                 0.010   myosin VA isoform 1 
TRAK1                 0.010   OGT(O-Glc-NAc transferase)-interacting protein 106 ...
TRAK1                 0.010   OGT(O-Glc-NAc transferase)-interacting protein 106 K...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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