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Search of human proteins with 16936535
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16936535 unc119 (C.elegans) homolog isoform b [Homo sapiens]
(220 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16936535 unc119 (C.elegans) homolog isoform b [Homo sapiens] 453 e-128
gi|4827048 unc119 (C.elegans) homolog isoform a [Homo sapiens] 422 e-118
gi|122937500 unc-119 homolog B [Homo sapiens] 218 3e-57
gi|4505671 phosphodiesterase 6D [Homo sapiens] 42 3e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 40 0.002
gi|91208420 bassoon protein [Homo sapiens] 39 0.005
gi|22027541 programmed cell death 7 [Homo sapiens] 37 0.010
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 37 0.017
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 37 0.017
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 37 0.017
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 37 0.017
gi|32880208 diaphanous homolog 3 isoform b [Homo sapiens] 37 0.017
gi|110225351 diaphanous homolog 3 isoform a [Homo sapiens] 37 0.017
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 37 0.017
gi|23503317 coiled-coil domain containing 96 [Homo sapiens] 37 0.017
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 36 0.023
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 36 0.023
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 36 0.029
gi|150378549 tangerin [Homo sapiens] 36 0.029
gi|24497506 forkhead box A3 [Homo sapiens] 36 0.029
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 35 0.038
gi|118200352 hypothetical protein LOC642273 [Homo sapiens] 35 0.038
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 35 0.038
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 35 0.038
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 35 0.050
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 35 0.066
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 35 0.066
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 35 0.066
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 35 0.066
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 35 0.066
>gi|16936535 unc119 (C.elegans) homolog isoform b [Homo sapiens]
Length = 220
Score = 453 bits (1166), Expect = e-128
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI 60
MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI
Sbjct: 1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI 60
Query: 61 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD 120
GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD
Sbjct: 61 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD 120
Query: 121 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG 180
LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG
Sbjct: 121 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG 180
Query: 181 FCIPSSKNTCEHIYDFPPLSEELSARAGSSGSGEVGASRD 220
FCIPSSKNTCEHIYDFPPLSEELSARAGSSGSGEVGASRD
Sbjct: 181 FCIPSSKNTCEHIYDFPPLSEELSARAGSSGSGEVGASRD 220
>gi|4827048 unc119 (C.elegans) homolog isoform a [Homo sapiens]
Length = 240
Score = 422 bits (1085), Expect = e-118
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI 60
MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI
Sbjct: 1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPI 60
Query: 61 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD 120
GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD
Sbjct: 61 GPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRD 120
Query: 121 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG 180
LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG
Sbjct: 121 LDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFG 180
Query: 181 FCIPSSKNTCEHIYDFPPLSEEL 203
FCIPSSKNTCEHIYDFPPLSEEL
Sbjct: 181 FCIPSSKNTCEHIYDFPPLSEEL 203
>gi|122937500 unc-119 homolog B [Homo sapiens]
Length = 251
Score = 218 bits (555), Expect = 3e-57
Identities = 106/147 (72%), Positives = 122/147 (82%), Gaps = 3/147 (2%)
Query: 60 IGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRR 119
I PE VL L R+T +YLC PE+NIY IDF RFKIRD+++GTVLFEI KP VS++
Sbjct: 68 IRPEHVLRLSRVTENYLCKPEDNIYSIDFTRFKIRDLETGTVLFEIAKPCVSDQEEDEEE 127
Query: 120 ---DLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFD 176
D+D +AGRFVRYQFTPAFLRLR VGATVEFTVGDKPV+NFRMIERHYFR LLK+FD
Sbjct: 128 GGGDVDISAGRFVRYQFTPAFLRLRTVGATVEFTVGDKPVSNFRMIERHYFREHLLKNFD 187
Query: 177 FHFGFCIPSSKNTCEHIYDFPPLSEEL 203
F FGFCIPSS+NTCEHIY+FP LSE++
Sbjct: 188 FDFGFCIPSSRNTCEHIYEFPQLSEDV 214
>gi|4505671 phosphodiesterase 6D [Homo sapiens]
Length = 150
Score = 42.4 bits (98), Expect = 3e-04
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 138 LRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFP 197
L+ + V + F+ ++ + FR+ ++ YF+ Q L+ + F FGF IP+S NT + + +
Sbjct: 54 LKCKAVSRELNFSSTEQ-MEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAA 112
Query: 198 PLSEELSA 205
P S+ + A
Sbjct: 113 PESQMMPA 120
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 8 GGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPIGP 62
G AG PGPSG + P P PA E G + GP RPG + P GP
Sbjct: 878 GAAGRV--GPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGP 930
Score = 33.5 bits (75), Expect = 0.15
Identities = 21/68 (30%), Positives = 26/68 (38%)
Query: 7 GGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPIGPEDVL 66
G T PG G AP P PA AGP GP+ + P GP+
Sbjct: 1034 GDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPR 1093
Query: 67 GLQRITGD 74
G + TG+
Sbjct: 1094 GDKGETGE 1101
Score = 27.7 bits (60), Expect = 8.0
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 19 GPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPIGPEDVLGLQRITGD 74
GP G P P+ + S+ D G PGP+ + P GP G + G+
Sbjct: 419 GPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGE 474
Score = 27.7 bits (60), Expect = 8.0
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 7 GGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPIGPEDVL 66
G T + PGP G P P E + G+ EP GP PGP + G
Sbjct: 440 GSKGDTGAKGEPGPVGVQGPPGPAGE-EGKRGARGEP--GPTGLPGPPGERGGPGSRGFP 496
Query: 67 GLQRITG 73
G + G
Sbjct: 497 GADGVAG 503
Score = 27.7 bits (60), Expect = 8.0
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 19/66 (28%)
Query: 8 GGAG-TATESAPGPSGQSVAPIPQ-----PPAESESGSESEPD-------------AGPG 48
G AG T APG G+ P P P A+ + G++ EP AGP
Sbjct: 788 GPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPA 847
Query: 49 PRPGPL 54
PGP+
Sbjct: 848 GPPGPI 853
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 38.5 bits (88), Expect = 0.005
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 8 GGAGTATESAPGPSGQSVAPIP----QPPAESESGSESEPDA-----GPGPRPGPLQRKQ 58
GGAG PGP P Q PA + S + P GPGP PGP +
Sbjct: 19 GGAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPGPGPGPGPGSTSR 78
Query: 59 PIGPEDVLGLQR 70
+ P++ LG QR
Sbjct: 79 RLDPKEPLGNQR 90
Score = 34.7 bits (78), Expect = 0.066
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 15 ESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRP 51
E+ P P G P P P A++E G+ P +GPG P
Sbjct: 394 EAGPKPLGSGPGPGPAPGAKTEPGARMGPGSGPGALP 430
Score = 27.7 bits (60), Expect = 8.0
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 14/60 (23%)
Query: 8 GGAGTATESAPGPS-GQSVAPIPQPP----AESESGSESE---------PDAGPGPRPGP 53
G A A++ A P G S A PQP AE +GS+ P A P P PGP
Sbjct: 3809 GSAPAASQPAGKPQPGPSTATGPQPAGPPRAEQTNGSKGTAKAPQQGRAPQAQPAPGPGP 3868
>gi|22027541 programmed cell death 7 [Homo sapiens]
Length = 485
Score = 37.4 bits (85), Expect = 0.010
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 17/80 (21%)
Query: 2 KVKKGGGGAGTATESAPGPSGQSVAPIPQPPAE------SESGSESEPDA-GPGPRPGPL 54
+ +GGGGAG A P P P+P PP + +++G P GPGP P
Sbjct: 69 EASRGGGGAG-AFYPVPPP------PLPPPPPQCRPFPGTDAGERPRPPPPGPGPPWSPR 121
Query: 55 QRKQPIGPEDVLG---LQRI 71
+ P P DVLG LQR+
Sbjct: 122 WPEAPPPPADVLGDAALQRL 141
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 36.6 bits (83), Expect = 0.017
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 14 TESAPGPSGQSV--APIPQPPAESESGSESEPDAGPGPRPG 52
T S PG SG + +P P++ +SGS P A PGPRPG
Sbjct: 90 TRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRP-AAPGPRPG 129
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 36.6 bits (83), Expect = 0.017
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 14 TESAPGPSGQSV--APIPQPPAESESGSESEPDAGPGPRPG 52
T S PG SG + +P P++ +SGS P A PGPRPG
Sbjct: 90 TRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRP-AAPGPRPG 129
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 36.6 bits (83), Expect = 0.017
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 14 TESAPGPSGQSV--APIPQPPAESESGSESEPDAGPGPRPG 52
T S PG SG + +P P++ +SGS P A PGPRPG
Sbjct: 90 TRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRP-AAPGPRPG 129
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 36.6 bits (83), Expect = 0.017
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 14 TESAPGPSGQSV--APIPQPPAESESGSESEPDAGPGPRPG 52
T S PG SG + +P P++ +SGS P A PGPRPG
Sbjct: 90 TRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRP-AAPGPRPG 129
>gi|32880208 diaphanous homolog 3 isoform b [Homo sapiens]
Length = 849
Score = 36.6 bits (83), Expect = 0.017
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 4 KKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPL 54
K+GG G P PSG V P P PP P +GP P P PL
Sbjct: 303 KEGGTGHSALPPPPPLPSGGGVPPPPPPPPPPPLPGMRMPFSGPVPPPPPL 353
>gi|110225351 diaphanous homolog 3 isoform a [Homo sapiens]
Length = 1193
Score = 36.6 bits (83), Expect = 0.017
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 4 KKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPL 54
K+GG G P PSG V P P PP P +GP P P PL
Sbjct: 566 KEGGTGHSALPPPPPLPSGGGVPPPPPPPPPPPLPGMRMPFSGPVPPPPPL 616
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 36.6 bits (83), Expect = 0.017
Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 1 MKVKKGGGGAG--TATESAPGPSGQSVAP-IPQPPAE-SESGSESE--PDAGPGPRPGPL 54
+K +KG GA + GPSG P P PP E E+G E PD PG R GP
Sbjct: 369 LKGEKGEPGADGEAGRPGSSGPSGDEGQPGEPGPPGEKGEAGDEGNPGPDGAPGERGGPG 428
Query: 55 QRKQPIGPEDVLGLQRITGD 74
+R GP G + GD
Sbjct: 429 ER----GPRGTPGTRGPRGD 444
>gi|23503317 coiled-coil domain containing 96 [Homo sapiens]
Length = 555
Score = 36.6 bits (83), Expect = 0.017
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 5 KGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPIGPED 64
KG A A E PG G+ P P+P +E G+E EP A P P GP + + G E+
Sbjct: 71 KGLTAAEAAGEEGPGEPGRPAEPQPEPEEPAEVGAE-EP-AQPEPGAGPEELEAEAGAEE 128
Query: 65 V 65
+
Sbjct: 129 L 129
Score = 28.5 bits (62), Expect = 4.7
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 9 GAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPIGPEDVLGL 68
G A E A P G + A E G +EP P P + ++P PE G
Sbjct: 59 GGTAADEQAEAPKGLTAAEAAGEEGPGEPGRPAEPQPEP-EEPAEVGAEEPAQPEPGAGP 117
Query: 69 QRITGDYLCSPEENIYKIDFVRFK 92
+ + + E + VRF+
Sbjct: 118 EELEAEAGAEELEQAAEGKEVRFQ 141
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 36.2 bits (82), Expect = 0.023
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQP 59
M + GGG G + + P P P P PPA + P P P PGP + P
Sbjct: 1 MDARGGGGRPGESPGATPAPG----PPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHP 55
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
sapiens]
Length = 1584
Score = 36.2 bits (82), Expect = 0.023
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 18 PGPSGQSVAPIPQ-PPAESESGSESEPDAGPGPRPGPLQRKQPIGPEDVLGLQRITGDYL 76
P P Q + P P PA G EP A PGP GP + + + V L+R Y
Sbjct: 1419 PPPPQQPLPPPPNLEPAPPSLGDPGEPAAHPGPSTGPSTKNENVATLSVSSLERRKSRY- 1477
Query: 77 CSPEENIYKIDFVRFKIRDM 96
E + KI R + +DM
Sbjct: 1478 --AELDFEKIMHTRKRHQDM 1495
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 35.8 bits (81), Expect = 0.029
Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 12 TATESAPGPSGQSVAPIPQPPAESESGSESEPDA-GPGPRPGPLQRKQPIGP 62
T PGP G P P P + G+E EP A GP RPGP P GP
Sbjct: 1248 TGHPGLPGPKGDCGKPGP-PGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGP 1298
Score = 28.5 bits (62), Expect = 4.7
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 19 GPSG-QSVAPIPQPPAESESGSESEPDAG--------PGPR--PGPLQRKQPIGPEDVLG 67
GP G + V P PP G + EP A PGPR PGP K G V G
Sbjct: 771 GPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKG 830
>gi|150378549 tangerin [Homo sapiens]
Length = 1523
Score = 35.8 bits (81), Expect = 0.029
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 15/75 (20%)
Query: 6 GGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPIGPEDV 65
G GA A AP PS P P PP ++S +P G P P P P +
Sbjct: 1304 GAMGAAAAEGQAPDPS-----PAPGPPTAADS---QQPPGGSSPSEEP-----PPSPGEE 1350
Query: 66 LGLQRI--TGDYLCS 78
GLQR T Y+C+
Sbjct: 1351 AGLQRFQDTSQYVCA 1365
>gi|24497506 forkhead box A3 [Homo sapiens]
Length = 350
Score = 35.8 bits (81), Expect = 0.029
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 2 KVKKGGGGAGTATESAPGPSGQSVAPI------PQPPAESESGSESEPDAGPGPRPGPLQ 55
KVKKGG GA T T + G + + P PQPP + EP+A G G L
Sbjct: 218 KVKKGGSGAATTTRNGTGSAASTTTPAATVTSPPQPPPPA-----PEPEAQGGEDVGALD 272
Query: 56 RKQP 59
P
Sbjct: 273 CGSP 276
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 35.4 bits (80), Expect = 0.038
Identities = 19/55 (34%), Positives = 24/55 (43%)
Query: 17 APGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPIGPEDVLGLQRI 71
APGP G AP P P +G + PGP G R+ P P +L R+
Sbjct: 129 APGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRL 183
>gi|118200352 hypothetical protein LOC642273 [Homo sapiens]
Length = 321
Score = 35.4 bits (80), Expect = 0.038
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 5 KGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGPLQRKQPIGPED 64
+G G + PGP+ P PA + S P A PGP P ++R+
Sbjct: 143 EGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVPAAPPGPEPRVVRRR------- 195
Query: 65 VLGLQRITGD 74
GLQR D
Sbjct: 196 --GLQRSQSD 203
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 35.4 bits (80), Expect = 0.038
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPR--PGPLQRKQ 58
MK +KG G PGP G S+ P PP P PGP+ GP+
Sbjct: 510 MKGEKGDSGM-------PGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHG 562
Query: 59 PIGPEDVLGLQRITGD 74
P GP+ G + G+
Sbjct: 563 PAGPKGERGEKGAMGE 578
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 35.4 bits (80), Expect = 0.038
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 1 MKVKKGGGGAGTATESAPGPSGQSVAPIPQPPAESESGSESEPDAGPGPR--PGPLQRKQ 58
MK +KG G PGP G S+ P PP P PGP+ GP+
Sbjct: 510 MKGEKGDSGM-------PGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHG 562
Query: 59 PIGPEDVLGLQRITGD 74
P GP+ G + G+
Sbjct: 563 PAGPKGERGEKGAMGE 578
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 35.0 bits (79), Expect = 0.050
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 19 GPSGQSVAPIPQPPAESESGSE---SEPDAGPGPRPGPLQRKQPIGPEDVLGLQRITG 73
GP G+ + P PP S SE S P PGP PGP + P GP G Q + G
Sbjct: 880 GPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGP-PGPKGDQGPPGPRGHQGEQGLPG 936
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 34.7 bits (78), Expect = 0.066
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 18 PGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGP 53
P P Q P PP+ S +G P GPGP PGP
Sbjct: 209 PMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGP 244
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 34.7 bits (78), Expect = 0.066
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 18 PGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGP 53
P P Q P PP+ S +G P GPGP PGP
Sbjct: 209 PMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGP 244
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 34.7 bits (78), Expect = 0.066
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 18 PGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGP 53
P P Q P PP+ S +G P GPGP PGP
Sbjct: 209 PMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGP 244
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 34.7 bits (78), Expect = 0.066
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 18 PGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGP 53
P P Q P PP+ S +G P GPGP PGP
Sbjct: 209 PMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGP 244
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 34.7 bits (78), Expect = 0.066
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 18 PGPSGQSVAPIPQPPAESESGSESEPDAGPGPRPGP 53
P P Q P PP+ S +G P GPGP PGP
Sbjct: 209 PMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGP 244
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.138 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,932,474
Number of Sequences: 37866
Number of extensions: 665556
Number of successful extensions: 8501
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 373
Number of HSP's that attempted gapping in prelim test: 6688
Number of HSP's gapped (non-prelim): 2037
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.