Search of human proteins with 16933553

Search of human proteins with 16933553

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|16933553 anthrax toxin receptor 1 isoform 3 precursor [Homo
sapiens]
         (333 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|16933553 anthrax toxin receptor 1 isoform 3 precursor [Homo s...   670   0.0  
gi|16933551 anthrax toxin receptor 1 isoform 2 precursor [Homo s...   639   0.0  
gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo s...   639   0.0  
gi|224809466 anthrax toxin receptor 2 isoform 2 [Homo sapiens]        311   5e-85
gi|50513243 anthrax toxin receptor 2 isoform 1 [Homo sapiens]         311   5e-85
gi|62548866 integrin, alpha D precursor [Homo sapiens]                 56   5e-08
gi|156616290 collagen type VI alpha 6 [Homo sapiens]                   55   1e-07
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                53   4e-07
gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]               48   1e-05
gi|112734845 collagen, type XX, alpha 1 [Homo sapiens]                 41   0.002
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          40   0.004
gi|62548862 matrilin 2 isoform b precursor [Homo sapiens]              39   0.005
gi|62548860 matrilin 2 isoform a precursor [Homo sapiens]              39   0.005
gi|4505111 matrilin 1, cartilage matrix protein [Homo sapiens]         37   0.019
gi|40068485 von Willebrand factor A domain containing 1 isoform ...    36   0.042
gi|13699836 matrilin 4 isoform 3 precursor [Homo sapiens]              35   0.072
gi|13699834 matrilin 4 isoform 2 precursor [Homo sapiens]              35   0.072
gi|13699830 matrilin 4 isoform 1 precursor [Homo sapiens]              35   0.072
gi|52485853 integrin, alpha 11 precursor [Homo sapiens]                35   0.093
gi|56549696 E1A binding protein p400 [Homo sapiens]                    33   0.46 
gi|150417981 glucocorticoid receptor DNA binding factor 1 [Homo ...    30   3.0  
gi|67763814 death-inducing-protein [Homo sapiens]                      30   3.9  
gi|71773480 aldehyde oxidase 1 [Homo sapiens]                          29   5.1  
gi|4502209 ADP-ribosylation factor 5 [Homo sapiens]                    29   6.7  
gi|61563742 hect domain and RLD 6 [Homo sapiens]                       29   6.7  

>gi|16933553 anthrax toxin receptor 1 isoform 3 precursor [Homo
           sapiens]
          Length = 333

 Score =  670 bits (1728), Expect = 0.0
 Identities = 333/333 (100%), Positives = 333/333 (100%)

Query: 1   MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN 60
           MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN
Sbjct: 1   MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN 60

Query: 61  EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM 120
           EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM
Sbjct: 61  EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM 120

Query: 121 HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV 180
           HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV
Sbjct: 121 HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV 180

Query: 181 KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV 240
           KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV
Sbjct: 181 KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV 240

Query: 241 VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN 300
           VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN
Sbjct: 241 VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN 300

Query: 301 DGLSFISSSVIITTTHCSLHKIASGPTTAACME 333
           DGLSFISSSVIITTTHCSLHKIASGPTTAACME
Sbjct: 301 DGLSFISSSVIITTTHCSLHKIASGPTTAACME 333


>gi|16933551 anthrax toxin receptor 1 isoform 2 precursor [Homo
           sapiens]
          Length = 368

 Score =  639 bits (1649), Expect = 0.0
 Identities = 318/318 (100%), Positives = 318/318 (100%)

Query: 1   MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN 60
           MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN
Sbjct: 1   MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN 60

Query: 61  EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM 120
           EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM
Sbjct: 61  EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM 120

Query: 121 HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV 180
           HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV
Sbjct: 121 HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV 180

Query: 181 KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV 240
           KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV
Sbjct: 181 KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV 240

Query: 241 VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN 300
           VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN
Sbjct: 241 VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN 300

Query: 301 DGLSFISSSVIITTTHCS 318
           DGLSFISSSVIITTTHCS
Sbjct: 301 DGLSFISSSVIITTTHCS 318


>gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo
           sapiens]
          Length = 564

 Score =  639 bits (1649), Expect = 0.0
 Identities = 318/318 (100%), Positives = 318/318 (100%)

Query: 1   MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN 60
           MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN
Sbjct: 1   MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN 60

Query: 61  EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM 120
           EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM
Sbjct: 61  EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM 120

Query: 121 HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV 180
           HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV
Sbjct: 121 HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV 180

Query: 181 KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV 240
           KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV
Sbjct: 181 KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV 240

Query: 241 VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN 300
           VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN
Sbjct: 241 VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN 300

Query: 301 DGLSFISSSVIITTTHCS 318
           DGLSFISSSVIITTTHCS
Sbjct: 301 DGLSFISSSVIITTTHCS 318


>gi|224809466 anthrax toxin receptor 2 isoform 2 [Homo sapiens]
          Length = 489

 Score =  311 bits (797), Expect = 5e-85
 Identities = 162/316 (51%), Positives = 218/316 (68%), Gaps = 3/316 (0%)

Query: 4   AERRALGIGFQWLSLATLVLICAGQGGR-REDGGPACYGGFDLYFILDKSGSVLHHWNEI 62
           AER        WL     +L+ +G GG  R    P+C   FDLYF+LDKSGSV ++W EI
Sbjct: 3   AERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWIEI 62

Query: 63  YYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHE 122
           Y FV+QLA +F+SP++R+SFIVFS++ T ++ LT DR +I +GLE+L++V P G+TY+HE
Sbjct: 63  YNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHE 122

Query: 123 GFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKD 182
           G + A+EQI  +   G +T+S+IIALTDG+L   +  Y+E+EA  SR LGA VYCVGV D
Sbjct: 123 GLKLANEQI--QKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180

Query: 183 FNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVR 242
           F + QL RIADSK+ VFPV  GFQAL+GII+SIL +SC EIL  +PS++C GE FQ+V+ 
Sbjct: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240

Query: 243 GNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMNDG 302
           G GF        VLC++ +N++ T + KP SV+   +LCPAPIL + G    + VS N G
Sbjct: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300

Query: 303 LSFISSSVIITTTHCS 318
            S IS S+I+T T CS
Sbjct: 301 KSVISGSLIVTATECS 316


>gi|50513243 anthrax toxin receptor 2 isoform 1 [Homo sapiens]
          Length = 488

 Score =  311 bits (797), Expect = 5e-85
 Identities = 162/316 (51%), Positives = 218/316 (68%), Gaps = 3/316 (0%)

Query: 4   AERRALGIGFQWLSLATLVLICAGQGGR-REDGGPACYGGFDLYFILDKSGSVLHHWNEI 62
           AER        WL     +L+ +G GG  R    P+C   FDLYF+LDKSGSV ++W EI
Sbjct: 3   AERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWIEI 62

Query: 63  YYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHE 122
           Y FV+QLA +F+SP++R+SFIVFS++ T ++ LT DR +I +GLE+L++V P G+TY+HE
Sbjct: 63  YNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHE 122

Query: 123 GFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKD 182
           G + A+EQI  +   G +T+S+IIALTDG+L   +  Y+E+EA  SR LGA VYCVGV D
Sbjct: 123 GLKLANEQI--QKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180

Query: 183 FNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVR 242
           F + QL RIADSK+ VFPV  GFQAL+GII+SIL +SC EIL  +PS++C GE FQ+V+ 
Sbjct: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240

Query: 243 GNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMNDG 302
           G GF        VLC++ +N++ T + KP SV+   +LCPAPIL + G    + VS N G
Sbjct: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300

Query: 303 LSFISSSVIITTTHCS 318
            S IS S+I+T T CS
Sbjct: 301 KSVISGSLIVTATECS 316


>gi|62548866 integrin, alpha D precursor [Homo sapiens]
          Length = 1161

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 24/234 (10%)

Query: 34  DGGPAC-YGGFDLYFILDKSGSV-LHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTT 91
           D  P C +   D+ F++D SGS+  + +N++  FV+ +  +F       + + +S     
Sbjct: 139 DATPECPHQEMDIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFEGTDTLFALMQYSN---- 194

Query: 92  LMKLTEDREQIRQGLEELQKVLP----GGDTYMHEGFERASEQIYYENRQGYRTAS-VII 146
           L+K+     Q R    +   V P     G T+   G      Q+++      ++A  ++I
Sbjct: 195 LLKIHFTFTQFRTSPSQQSLVDPIVQLKGLTFTATGILTVVTQLFHHKNGARKSAKKILI 254

Query: 147 ALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKDFNETQLAR-------IADSKDHVF 199
            +TDG+ ++D   YS+    ++   G I Y +GV    +   AR        A  +DHVF
Sbjct: 255 VITDGQKYKDPLEYSD-VIPQAEKAGIIRYAIGVGHAFQGPTARQELNTISSAPPQDHVF 313

Query: 200 PVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVRGNGFRHARNVD 253
            V D F AL  I   + +K    I A E +   A  SFQ  +   GF  A  +D
Sbjct: 314 KV-DNFAALGSIQKQLQEK----IYAVEGTQSRASSSFQHEMSQEGFSTALTMD 362


>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
          Length = 2263

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 44/185 (23%), Positives = 96/185 (51%), Gaps = 13/185 (7%)

Query: 44  DLYFILDKSGSV-LHHWNEIYYFVEQLAHKF-ISP-QLRMSFIVFSTRGTTLMKLTE--D 98
           D+Y ++D SGS     ++E+  F+ ++   F I+P ++R+  + ++       ++ +  +
Sbjct: 436 DIYLLIDGSGSTQATDFHEMKTFLSEVVGMFNIAPHKVRVGAVQYADSWDLEFEINKYSN 495

Query: 99  REQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQ-GYRTASVIIALTDGELHEDL 157
           ++ + + +E ++++  GG+T            +    +Q G +    ++ LT+G   + +
Sbjct: 496 KQDLGKAIENIRQM--GGNTNTGAALNFTLSLLQKAKKQRGNKVPCHLVVLTNGMSKDSI 553

Query: 158 FFYSEREANRSRDLGAIVYCVGVKDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILK 217
                  ANR R+    VY +G+K+ N+TQL  IA  +  V+ V+D F AL+ I + +++
Sbjct: 554 L----EPANRLREEHIRVYAIGIKEANQTQLREIAGEEKRVYYVHD-FDALKDIRNQVVQ 608

Query: 218 KSCIE 222
           + C E
Sbjct: 609 EICTE 613



 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 18/187 (9%)

Query: 44  DLYFILDKSGSVLH-HWNEIYYFVEQLAHKFI--SPQLRMSFIVFSTRGTTLMKLTE--D 98
           D+ F++D SGS+ +  +N +  F+  L  K      Q+R   + ++     L  L +   
Sbjct: 809 DVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLFYLDDFGT 868

Query: 99  REQIRQGLEELQKVLPGGDTYMHE--GFERASEQIYYE---NRQGYRTASVIIALTDGEL 153
           + ++   L+  Q +  GG TY  E  GF   S+ ++ E   +R       V+I +TDGE 
Sbjct: 869 KLEVISVLQNDQAM--GGSTYTAEALGF---SDHMFTEARGSRLNKGVPQVLIVITDGES 923

Query: 154 HEDLFFYSEREANRSRDLGAIVYCVGVKDFNETQLARIADSKDHVFPVNDGFQALQGIIH 213
           H+     +  +A   RD G +V  VG+   N  +L  +A S D  F V + F  L+GI  
Sbjct: 924 HDADKLNATAKA--LRDKGILVLAVGIDGANPVELLAMAGSSDKYFFV-ETFGGLKGIFS 980

Query: 214 SILKKSC 220
            +    C
Sbjct: 981 DVTASVC 987



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 16/184 (8%)

Query: 44  DLYFILDKSGSV-LHHWNEIYYFVEQLAHKF-ISP-QLRMSFIVFSTRGTTLMKLTEDRE 100
           D+ F++D SGS+   +++++  F++ L  K  I P ++++  + FS       +L     
Sbjct: 622 DIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRVQIGVVQFSDINKEEFQLNRFMS 681

Query: 101 Q--IRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYRT--ASVIIALTDGELHED 156
           Q  I   ++++  +  G  T         S+  Y+   +G R      +I +TDGE  + 
Sbjct: 682 QSDISNAIDQMAHI--GQTTLTGSALSFVSQ--YFSPTKGARPNIRKFLILITDGEAQDI 737

Query: 157 LFFYSEREANRSRDLGAIVYCVGVKDFNETQLARIADSKDHVFPVNDGFQALQGIIHSIL 216
           +    +  A   R  G I+Y VGV   N TQL  I+   + VF V + F  LQ I   ++
Sbjct: 738 V----KEPAVVLRQEGVIIYSVGVFGSNVTQLEEISGRPEMVFYV-ENFDILQRIEDDLV 792

Query: 217 KKSC 220
              C
Sbjct: 793 FGIC 796


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 29/263 (11%)

Query: 18  LATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSV-LHHWNEIYYFVEQLAHKF-IS 75
           L  ++L+ +G GG +          +DL F+LD S SV    + ++  +V  L   F + 
Sbjct: 12  LLWMLLLWSGGGGCQAQRAGCKSVHYDLVFLLDTSSSVGKEDFEKVRQWVANLVDTFEVG 71

Query: 76  P-QLRMSFIVFSTRGTTLMK--LTEDREQIRQGLEELQKVLPGGDTYMHEGFERASEQIY 132
           P + R+  + +S R TT  +  L   +E+++     L     GG+T   +     + + +
Sbjct: 72  PDRTRVGVVRYSDRPTTAFELGLFGSQEEVKAAARRL--AYHGGNTNTGDALRYITARSF 129

Query: 133 YENRQG----YRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKDFNETQL 188
             +  G         V I LTDG   +DL   +   A+R+   G  ++ VGV +  + +L
Sbjct: 130 SPHAGGRPRDRAYKQVAILLTDGR-SQDLVLDAAAAAHRA---GIRIFAVGVGEALKEEL 185

Query: 189 ARIAD--SKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVRGNGF 246
             IA      HVF V+D F A+  I   + ++ C  +L   PS         V V G+ F
Sbjct: 186 EEIASEPKSAHVFHVSD-FNAIDKIRGKLRRRLCENVLC--PS---------VRVEGDRF 233

Query: 247 RHARNVDRVLCSFKINDSVTLNE 269
           +H     + +  F + D  ++ E
Sbjct: 234 KHTNGGTKEITGFDLMDLFSVKE 256


>gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]
          Length = 2526

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 53/229 (23%), Positives = 99/229 (43%), Gaps = 17/229 (7%)

Query: 44   DLYFILDKSGSVLHHWNE-IYYFVEQLAHKFISPQLRMSF--IVFSTRGTTLMKLT--ED 98
            D+ F+LD SGS+   + + +      L  K    + R+ F  + +S +   L  L    +
Sbjct: 814  DVVFVLDHSGSIKKQYQDHMINLTIHLVKKADVGRDRVQFGALKYSDQPNILFYLNTYSN 873

Query: 99   REQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYE--NRQGYRTASVIIALTDGELHED 156
            R  I + L + +    GG+TY  +  + A+     E  +R       ++I +TDGE H+ 
Sbjct: 874  RSAIIENLRKRRDT--GGNTYTAKALKHANALFTEEHGSRIKQNVKQMLIVITDGESHD- 930

Query: 157  LFFYSEREANRSRDLGAIVYCVGVKDFNETQLARIADSKDHVFPVNDGFQALQGIIHSIL 216
                    A   R+ G  ++ VGV   N+ +L  +A +K++   V D F  L+ +   + 
Sbjct: 931  -HDQLNDTALELRNKGITIFAVGVGKANQKELEGMAGNKNNTIYV-DNFDKLKDVFTLVQ 988

Query: 217  KKSCIEILAAEPSTICAGESFQVVVRGNGFRHARNVDRVLCSFKINDSV 265
            ++ C      E   +C  +   V+   +G     N D V  +  ++D +
Sbjct: 989  ERMC-----TEAPEVCHLQEADVIFLCDGSDRVSNSDFVTMTTFLSDLI 1032


>gi|112734845 collagen, type XX, alpha 1 [Homo sapiens]
          Length = 1284

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)

Query: 44  DLYFILDKSGSVLH-HWNEIYYFVEQLAHKF-ISP-QLRMSFIVFSTRGTTLMKLTE--D 98
           D+ F++D S S+ H H+ ++  F+  +   F I P ++++    +S    T   L     
Sbjct: 179 DMVFLVDGSWSIGHSHFQQVKDFLASVIAPFEIGPDKVQVGLTQYSGDAQTEWDLNSLST 238

Query: 99  REQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYR--TASVIIALTDGELHED 156
           +EQ+   +  L+    GG+T+          Q   +   G R   A V+I +TDG+  +D
Sbjct: 239 KEQVLAAVRRLR--YKGGNTFTGLALTHVLGQ-NLQPAAGLRPEAAKVVILVTDGKSQDD 295

Query: 157 LFFYSEREANRSRDLGAIVYCVGVKDFNETQLARIA 192
           +       A   +DLG  V+ VGVK+ +E +L  +A
Sbjct: 296 V----HTAARVLKDLGVNVFAVGVKNADEAELRLLA 327


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 18/187 (9%)

Query: 44  DLYFILDKSGSV-LHHWNEIYYFVEQLAHKFISPQ----LRMSFIVFSTRGTT---LMKL 95
           D+ F+LD S S+   ++ E+  F+E L   F        +R + + +S    T   L  L
Sbjct: 38  DIVFLLDGSSSIGRSNFREVRSFLEGLVLPFSGAASAQGVRFATVQYSDDPRTEFGLDAL 97

Query: 96  TEDREQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHE 155
               + IR  + EL     GG+T         ++ ++           V I +TDG+  +
Sbjct: 98  GSGGDVIR-AIRELS--YKGGNTRTGAAILHVADHVFLPQLARPGVPKVCILITDGK-SQ 153

Query: 156 DLFFYSEREANRSRDLGAIVYCVGVKDFNETQLARIAD--SKDHVFPVNDGFQALQGIIH 213
           DL    +  A R +  G  ++ VG+K+ +  +L R+A   + D  F VND F  L+ ++ 
Sbjct: 154 DLV---DTAAQRLKGQGVKLFAVGIKNADPEELKRVASQPTSDFFFFVND-FSILRTLLP 209

Query: 214 SILKKSC 220
            + ++ C
Sbjct: 210 LVSRRVC 216


>gi|62548862 matrilin 2 isoform b precursor [Homo sapiens]
          Length = 937

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 20/202 (9%)

Query: 44  DLYFILDKSGSV-LHHWNEIYYF-VEQLAHKFISPQL-RMSFIVFST--RGTTLMKLTED 98
           DL FI+D S SV  H + ++  F V+ L    I P + R+  + + +  +    +K  + 
Sbjct: 57  DLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKR 116

Query: 99  REQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYR-----TASVIIALTDGEL 153
           + ++ + ++ ++ +  G  T +   +   +  I +   +G R        VI+ +TDG  
Sbjct: 117 KSEVERAVKRMRHLSTGTMTGLAIQY---ALNIAFSEAEGARPLRENVPRVIMIVTDGRP 173

Query: 154 HEDLFFYSEREANRSRDLGAIVYCVGV--KDFNETQLARIADSKDHVFPVNDGFQALQGI 211
            + +       A ++RD G +++ +GV   DFN  +       +DHVF V + F  ++ +
Sbjct: 174 QDSV----AEVAAKARDTGILIFAIGVGQVDFNTLKSIGSEPHEDHVFLVAN-FSQIETL 228

Query: 212 IHSILKKSCIEILAAEPSTICA 233
                KK C   + +     CA
Sbjct: 229 TSVFQKKLCTAHMCSTLEHNCA 250


>gi|62548860 matrilin 2 isoform a precursor [Homo sapiens]
          Length = 956

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 20/202 (9%)

Query: 44  DLYFILDKSGSV-LHHWNEIYYF-VEQLAHKFISPQL-RMSFIVFST--RGTTLMKLTED 98
           DL FI+D S SV  H + ++  F V+ L    I P + R+  + + +  +    +K  + 
Sbjct: 57  DLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKR 116

Query: 99  REQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYR-----TASVIIALTDGEL 153
           + ++ + ++ ++ +  G  T +   +   +  I +   +G R        VI+ +TDG  
Sbjct: 117 KSEVERAVKRMRHLSTGTMTGLAIQY---ALNIAFSEAEGARPLRENVPRVIMIVTDGRP 173

Query: 154 HEDLFFYSEREANRSRDLGAIVYCVGV--KDFNETQLARIADSKDHVFPVNDGFQALQGI 211
            + +       A ++RD G +++ +GV   DFN  +       +DHVF V + F  ++ +
Sbjct: 174 QDSV----AEVAAKARDTGILIFAIGVGQVDFNTLKSIGSEPHEDHVFLVAN-FSQIETL 228

Query: 212 IHSILKKSCIEILAAEPSTICA 233
                KK C   + +     CA
Sbjct: 229 TSVFQKKLCTAHMCSTLEHNCA 250


>gi|4505111 matrilin 1, cartilage matrix protein [Homo sapiens]
          Length = 496

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 45/237 (18%)

Query: 24  ICAGQGGRREDGGPACYGGFDLYFILDKSGSVL-HHWNEIYYFVEQLAHKF-ISPQLRMS 81
           +C+G GG             DL F++D S SV   ++  +  F+ Q+     +S +L   
Sbjct: 264 VCSGGGGS---------SATDLVFLIDGSKSVRPENFELVKKFISQIVDTLDVSDKLAQV 314

Query: 82  FIV---FSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHEGFERASEQIY-----Y 133
            +V    S R    +     ++ I+  +  +        +YM +G    +   Y     +
Sbjct: 315 GLVQYSSSVRQEFPLGRFHTKKDIKAAVRNM--------SYMEKGTMTGAALKYLIDNSF 366

Query: 134 ENRQGYRTAS--VIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKDFNETQLARI 191
               G R  +  V I  TDG   +    Y    A +++DLG  ++ VGV +  E +L  I
Sbjct: 367 TVSSGARPGAQKVGIVFTDGRSQD----YINDAAKKAKDLGFKMFAVGVGNAVEDELREI 422

Query: 192 ADS--KDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGES---FQVVVRG 243
           A     +H F   D F+ +  I   + KK C+E    +P   CA ES   FQ  V G
Sbjct: 423 ASEPVAEHYFYTAD-FKTINQIGKKLQKKICVE---EDP---CACESLVKFQAKVEG 472


>gi|40068485 von Willebrand factor A domain containing 1 isoform 1
           [Homo sapiens]
          Length = 445

 Score = 36.2 bits (82), Expect = 0.042
 Identities = 65/249 (26%), Positives = 102/249 (40%), Gaps = 39/249 (15%)

Query: 16  LSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHH-WNEIYYFVEQLAHKFI 74
           L LA  + +   + G  E G PA     DL F+LD S SV H+ ++ +  FV QL     
Sbjct: 7   LGLALSLRLALARSGA-ERGPPASAPRGDLMFLLDSSASVSHYEFSRVREFVGQLVAPLP 65

Query: 75  --SPQLRMSFIVFSTRGTTLMKLTED------REQIRQGLEELQKVLPGGDTYMHEGFER 126
             +  LR S +   +R  T     +       ++ +R   + +      GDT+       
Sbjct: 66  LGTGALRASLVHVGSRPYTEFPFGQHSSGEAAQDAVRASAQRM------GDTHTGLALVY 119

Query: 127 ASEQIYYENRQGYR--TASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCV--GVKD 182
           A EQ++ E   G R     V++ +TDG   + +           +DLG  V+ V  G  +
Sbjct: 120 AKEQLFAE-ASGARPGVPKVLVWVTDGGSSDPV----GPPMQELKDLGVTVFIVSTGRGN 174

Query: 183 FNETQLARIADSKDHV--FPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV 240
           F E   A  A ++ H+    V+D    +Q +  SIL        A  P  + A E     
Sbjct: 175 FLELSAAASAPAEKHLHFVDVDDLHIIVQELRGSILD-------AMRPQQLHATE----- 222

Query: 241 VRGNGFRHA 249
           +  +GFR A
Sbjct: 223 ITSSGFRLA 231


>gi|13699836 matrilin 4 isoform 3 precursor [Homo sapiens]
          Length = 499

 Score = 35.4 bits (80), Expect = 0.072
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 15/194 (7%)

Query: 10  GIGFQWLSLATLVLICAGQGGRREDGGPACY----GGFDLYFILDKSGSVL-HHWNEIYY 64
           G  FQ +S          +G + +  G +C     G  DL  ++D S SV   ++  +  
Sbjct: 225 GCEFQCVSEGLSYRCLCPEGRQLQADGKSCNRCREGHVDLVLLVDGSKSVRPQNFELVKR 284

Query: 65  FVEQLAHKF-ISPQ-LRMSFIVFSTRGTTLMKLTE--DREQIRQGLEELQKVLPGGDT-- 118
           FV Q+     +SP+  R+  + FS+R  T   L       +++Q +  ++ +  G  T  
Sbjct: 285 FVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMERGTMTGL 344

Query: 119 YMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCV 178
            +    E +  +      +      V +  TDG   +D+  +    A R+++ G ++Y V
Sbjct: 345 ALRHMVEHSFSEAQGARPRALNVPRVGLVFTDGRSQDDISVW----AARAKEEGIVMYAV 400

Query: 179 GVKDFNETQLARIA 192
           GV    E +L  IA
Sbjct: 401 GVGKAVEAELREIA 414


>gi|13699834 matrilin 4 isoform 2 precursor [Homo sapiens]
          Length = 540

 Score = 35.4 bits (80), Expect = 0.072
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 15/194 (7%)

Query: 10  GIGFQWLSLATLVLICAGQGGRREDGGPACY----GGFDLYFILDKSGSVL-HHWNEIYY 64
           G  FQ +S          +G + +  G +C     G  DL  ++D S SV   ++  +  
Sbjct: 266 GCEFQCVSEGLSYRCLCPEGRQLQADGKSCNRCREGHVDLVLLVDGSKSVRPQNFELVKR 325

Query: 65  FVEQLAHKF-ISPQ-LRMSFIVFSTRGTTLMKLTE--DREQIRQGLEELQKVLPGGDT-- 118
           FV Q+     +SP+  R+  + FS+R  T   L       +++Q +  ++ +  G  T  
Sbjct: 326 FVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMERGTMTGL 385

Query: 119 YMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCV 178
            +    E +  +      +      V +  TDG   +D+  +    A R+++ G ++Y V
Sbjct: 386 ALRHMVEHSFSEAQGARPRALNVPRVGLVFTDGRSQDDISVW----AARAKEEGIVMYAV 441

Query: 179 GVKDFNETQLARIA 192
           GV    E +L  IA
Sbjct: 442 GVGKAVEAELREIA 455


>gi|13699830 matrilin 4 isoform 1 precursor [Homo sapiens]
          Length = 581

 Score = 35.4 bits (80), Expect = 0.072
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 15/194 (7%)

Query: 10  GIGFQWLSLATLVLICAGQGGRREDGGPACY----GGFDLYFILDKSGSVL-HHWNEIYY 64
           G  FQ +S          +G + +  G +C     G  DL  ++D S SV   ++  +  
Sbjct: 307 GCEFQCVSEGLSYRCLCPEGRQLQADGKSCNRCREGHVDLVLLVDGSKSVRPQNFELVKR 366

Query: 65  FVEQLAHKF-ISPQ-LRMSFIVFSTRGTTLMKLTE--DREQIRQGLEELQKVLPGGDT-- 118
           FV Q+     +SP+  R+  + FS+R  T   L       +++Q +  ++ +  G  T  
Sbjct: 367 FVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMERGTMTGL 426

Query: 119 YMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCV 178
            +    E +  +      +      V +  TDG   +D+  +    A R+++ G ++Y V
Sbjct: 427 ALRHMVEHSFSEAQGARPRALNVPRVGLVFTDGRSQDDISVW----AARAKEEGIVMYAV 482

Query: 179 GVKDFNETQLARIA 192
           GV    E +L  IA
Sbjct: 483 GVGKAVEAELREIA 496


>gi|52485853 integrin, alpha 11 precursor [Homo sapiens]
          Length = 1188

 Score = 35.0 bits (79), Expect = 0.093
 Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 38/203 (18%)

Query: 39  CYGGFDLYFILDKSGSVLHHWNEIYYFVEQLAHKF-ISP-QLRMSFIVFSTRGTTLMKLT 96
           C    D+  +LD S S+ + W E+ +F+  +  KF I P Q+++  + +         L 
Sbjct: 159 CQTYMDIVIVLDGSNSI-YPWVEVQHFLINILKKFYIGPGQIQVGVVQYGEDVVHEFHLN 217

Query: 97  EDREQIRQGLEELQKVLPGGDTYMHEGFE---RASEQIYYENRQGYRTASVIIALTDGEL 153
           + R  ++  +E    +   G T     F      SE      R+G +   V+I +TDGE 
Sbjct: 218 DYRS-VKDVVEAASHIEQRGGTETRTAFGIEFARSEAFQKGGRKGAK--KVMIVITDGES 274

Query: 154 HED----------------------LFFYSEREANRSRDLGAIVYCVGVKD----FNETQ 187
           H+                       L +Y+ R  N    L  I Y     D    FN T 
Sbjct: 275 HDSPDLEKVIQQSERDNVTRYAVAVLGYYNRRGINPETFLNEIKYIASDPDDKHFFNVTD 334

Query: 188 LARIADSKDHVFPVNDGFQALQG 210
            A +   KD V  + D   +L+G
Sbjct: 335 EAAL---KDIVDALGDRIFSLEG 354


>gi|56549696 E1A binding protein p400 [Homo sapiens]
          Length = 3122

 Score = 32.7 bits (73), Expect = 0.46
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 15/118 (12%)

Query: 93  MKLTEDREQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGE 152
           +KL  + E+ R+    LQKV   G     +GF+   E        G R     I+LTD E
Sbjct: 853 IKLRVELEEKRKKALNLQKVSRRGKELRPKGFDALQESSLDSGMSG-RKRKASISLTDDE 911

Query: 153 LHEDLFFYSEREANRSRDLGAIVYCVGVKDFNETQLARIADSKDHVFPVNDGFQALQG 210
           + ++     E EAN            GV D ++T+L+ +A  K+   P+ D  +  +G
Sbjct: 912 VDDEEETIEEEEANE-----------GVVD-HQTELSNLA--KEAELPLLDLMKLYEG 955


>gi|150417981 glucocorticoid receptor DNA binding factor 1 [Homo
            sapiens]
          Length = 1499

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 256  LCSFKINDSVTLNEKPFSV--EDTYLLCPAPILKEVGMKAALQVSMNDGLSFISSS 309
            LC+  + DS    E  +S+  EDT L    P L +   K ++++  NDGLSFI S+
Sbjct: 977  LCNSNLQDSEEDIEPSYSLFREDTSL----PSLSKDHSKLSMELEGNDGLSFIMSN 1028


>gi|67763814 death-inducing-protein [Homo sapiens]
          Length = 578

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 161 SEREANRSRDL---GAIVYCVGVKDFNETQLARIADSKDHV 198
           S R++   RD    G ++   GV+DFN T+  R+ + K H+
Sbjct: 44  SPRDSEELRDPAGPGTLIMATGVQDFNRTEFDRLNEIKGHL 84


>gi|71773480 aldehyde oxidase 1 [Homo sapiens]
          Length = 1338

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 201 VNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVRGNGFRHARNVDRVLCSFK 260
           VN G +   G    I+++ CI      P+TICA  S Q ++   G      +  + C   
Sbjct: 441 VNSGMRVFFGEGDGIIRELCISYGGVGPATICAKNSCQKLI---GRHWNEQMLDIACRLI 497

Query: 261 INDSVTLNEKP 271
           +N+   L   P
Sbjct: 498 LNEVSLLGSAP 508


>gi|4502209 ADP-ribosylation factor 5 [Homo sapiens]
          Length = 180

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 86  STRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYRTASVI 145
           +T+G   +  + DRE++++  +ELQK+L        E   R +  + + N+Q    A  +
Sbjct: 84  NTQGLIFVVDSNDRERVQESADELQKML-------QEDELRDAVLLVFANKQDMPNAMPV 136

Query: 146 IALTD 150
             LTD
Sbjct: 137 SELTD 141


>gi|61563742 hect domain and RLD 6 [Homo sapiens]
          Length = 1022

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 18/78 (23%), Positives = 36/78 (46%)

Query: 230  TICAGESFQVVVRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEV 289
            T+   + F   + G    HAR + ++   F+  ++ +  + P S+    +L         
Sbjct: 939  TLDEKKKFLFFLTGRDRLHARGIQKMEIVFRCPETFSERDHPTSITCHNILSLPKYSTME 998

Query: 290  GMKAALQVSMNDGLSFIS 307
             M+ ALQV++N+   F+S
Sbjct: 999  RMEEALQVAINNNRGFVS 1016


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,318,923
Number of Sequences: 37866
Number of extensions: 521599
Number of successful extensions: 1050
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1037
Number of HSP's gapped (non-prelim): 28
length of query: 333
length of database: 18,247,518
effective HSP length: 103
effective length of query: 230
effective length of database: 14,347,320
effective search space: 3299883600
effective search space used: 3299883600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.