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Search of human proteins with 169234630
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169234630 RNA binding motif protein 11 [Homo sapiens]
(281 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169234630 RNA binding motif protein 11 [Homo sapiens] 579 e-165
gi|9994185 RNA binding motif protein 7 [Homo sapiens] 122 5e-28
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 74 1e-13
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 58 1e-08
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 57 1e-08
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 55 7e-08
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe... 55 7e-08
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe... 55 7e-08
gi|4826974 RNA binding motif protein, Y-linked, family 1, member... 54 1e-07
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe... 54 1e-07
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe... 54 1e-07
gi|56090533 RNA binding motif protein, Y-linked, family 1, membe... 54 1e-07
gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b... 54 2e-07
gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a ... 53 3e-07
gi|33620747 myelin expression factor 2 [Homo sapiens] 50 2e-06
gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens] 50 2e-06
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 50 3e-06
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 50 3e-06
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 50 3e-06
gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens] 50 3e-06
gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... 49 4e-06
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 49 4e-06
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 49 4e-06
gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... 49 4e-06
gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens] 49 4e-06
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 49 5e-06
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 49 5e-06
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 49 5e-06
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 49 5e-06
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 49 6e-06
>gi|169234630 RNA binding motif protein 11 [Homo sapiens]
Length = 281
Score = 579 bits (1492), Expect = e-165
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP 60
MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP
Sbjct: 1 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP 60
Query: 61 ESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFESCVKINSHNYRNEEMLVGRS 120
ESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFESCVKINSHNYRNEEMLVGRS
Sbjct: 61 ESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFESCVKINSHNYRNEEMLVGRS 120
Query: 121 SFPMQYFPINNTSLPQEYFLFQKMQWHVYNPVLQLPYYEMTAPLPNSASVSSSLNHVPDL 180
SFPMQYFPINNTSLPQEYFLFQKMQWHVYNPVLQLPYYEMTAPLPNSASVSSSLNHVPDL
Sbjct: 121 SFPMQYFPINNTSLPQEYFLFQKMQWHVYNPVLQLPYYEMTAPLPNSASVSSSLNHVPDL 180
Query: 181 EAGPSSYKWTHQQPSDSDLYQMTAPLPNSASVSSSLNHVPDLEAGPSSYKWTHQQPSDSD 240
EAGPSSYKWTHQQPSDSDLYQMTAPLPNSASVSSSLNHVPDLEAGPSSYKWTHQQPSDSD
Sbjct: 181 EAGPSSYKWTHQQPSDSDLYQMTAPLPNSASVSSSLNHVPDLEAGPSSYKWTHQQPSDSD 240
Query: 241 LYQMNKRKRQKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY 281
LYQMNKRKRQKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY
Sbjct: 241 LYQMNKRKRQKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY 281
>gi|9994185 RNA binding motif protein 7 [Homo sapiens]
Length = 266
Score = 122 bits (305), Expect = 5e-28
Identities = 60/99 (60%), Positives = 75/99 (75%)
Query: 1 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP 60
M A EADRT+FVGNLE +V EE+L+ELF QAGP+ KV I KD++GKPK F FV FKH
Sbjct: 1 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE 60
Query: 61 ESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSF 99
SV YA+ LLNGI+LYGRPI +Q+R GSS + + + S+
Sbjct: 61 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSY 99
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 74.3 bits (181), Expect = 1e-13
Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 4 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPES 62
++ D TV+VG L+ +V E +L+ELFLQAGP+ + KDR G+ + +GFV F E
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 63 VSYAIALLNGIRLYGRPINV 82
YAI ++N I+LYG+PI V
Sbjct: 67 ADYAIKIMNMIKLYGKPIRV 86
Score = 47.8 bits (112), Expect = 1e-05
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVT-ICKDRE-GKPKSFGFVCFKHPESVSYAIAL 69
+F+GNL+ + E++LY+ F G + + I +D + G K + F+ F ++ AI
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 70 LNGIRLYGRPINVQYRFGSSRSSE 93
+NG L RPI V Y F E
Sbjct: 162 MNGQYLCNRPITVSYAFKKDSKGE 185
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 57.8 bits (138), Expect = 1e-08
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREG-KPKSFGFVCFKHPESVSYAIALL 70
+FVG L E+ L + F GP+++V + KDRE + + FGF+ F +PE S A+ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 71 NGIRLYGRPINVQYRFGSSRSS 92
NG L GR I V + S+R +
Sbjct: 68 NGESLDGRQIRVDHAGKSARGT 89
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 57.4 bits (137), Expect = 1e-08
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 3 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPE 61
PA + + R+VFVGN+ EE L ++F + GP+ + DRE GKPK +GF ++ E
Sbjct: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 68
Query: 62 SVSYAIALLNGIRLYGRPINV 82
+ A+ LNG GR + V
Sbjct: 69 TALSAMRNLNGREFSGRALRV 89
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 55.1 bits (131), Expect = 7e-08
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 3 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPE 61
PA + + R+VFVGN+ EE L ++F + G + + DRE GKPK +GF ++ E
Sbjct: 9 PAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQE 68
Query: 62 SVSYAIALLNGIRLYGRPINV 82
+ A+ LNG GR + V
Sbjct: 69 TALSAMRNLNGREFSGRALRV 89
>gi|34303937 RNA binding motif protein, Y-linked, family 1, member
F [Homo sapiens]
Length = 496
Score = 55.1 bits (131), Expect = 7e-08
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 7 EADRT--VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVS 64
EAD +F+G L E++L +F + GP+++V + KDR K + F F+ F++P
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAK 62
Query: 65 YAIALLNGIRLYGRPINVQ 83
A +NG L+G+ I V+
Sbjct: 63 NAAKDMNGTSLHGKAIKVE 81
>gi|56090529 RNA binding motif protein, Y-linked, family 1, member
J [Homo sapiens]
Length = 496
Score = 55.1 bits (131), Expect = 7e-08
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 7 EADRT--VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVS 64
EAD +F+G L E++L +F + GP+++V + KDR K + F F+ F++P
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAK 62
Query: 65 YAIALLNGIRLYGRPINVQ 83
A +NG L+G+ I V+
Sbjct: 63 NAAKDMNGTSLHGKAIKVE 81
>gi|4826974 RNA binding motif protein, Y-linked, family 1, member
A1 [Homo sapiens]
Length = 496
Score = 54.3 bits (129), Expect = 1e-07
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 7 EADRT--VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVS 64
EAD +F+G L E++L +F + GP+++V + KDR K + F F+ F++P
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAK 62
Query: 65 YAIALLNGIRLYGRPINVQ 83
A +NG L+G+ I V+
Sbjct: 63 NAAKDMNGKSLHGKAIKVE 81
>gi|56090527 RNA binding motif protein, Y-linked, family 1, member
E [Homo sapiens]
Length = 496
Score = 54.3 bits (129), Expect = 1e-07
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 7 EADRT--VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVS 64
EAD +F+G L E++L +F + GP+++V + KDR K + F F+ F++P
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAK 62
Query: 65 YAIALLNGIRLYGRPINVQ 83
A +NG L+G+ I V+
Sbjct: 63 NAAKDMNGKSLHGKAIKVE 81
>gi|54633344 RNA binding motif protein, Y-linked, family 1, member
B [Homo sapiens]
Length = 496
Score = 54.3 bits (129), Expect = 1e-07
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 7 EADRT--VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVS 64
EAD +F+G L E++L +F + GP+++V + KDR K + F F+ F++P
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAK 62
Query: 65 YAIALLNGIRLYGRPINVQ 83
A +NG L+G+ I V+
Sbjct: 63 NAAKDMNGKSLHGKAIKVE 81
>gi|56090533 RNA binding motif protein, Y-linked, family 1, member
D [Homo sapiens]
Length = 496
Score = 54.3 bits (129), Expect = 1e-07
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 7 EADRT--VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVS 64
EAD +F+G L E++L +F + GP+++V + KDR K + F F+ F++P
Sbjct: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAK 62
Query: 65 YAIALLNGIRLYGRPINVQ 83
A +NG L+G+ I V+
Sbjct: 63 NAAKDMNGKSLHGKAIKVE 81
>gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b
[Homo sapiens]
Length = 691
Score = 53.5 bits (127), Expect = 2e-07
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 4 AQEEADR---TVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP 60
A ++A R TVFV NL+ +V + L E+F AG + + I +D++GK + G V F+
Sbjct: 156 AMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQS 215
Query: 61 ESVSYAIALLNGIRLYGRPINVQ 83
AI++ NG L+ RP++V+
Sbjct: 216 IEAVQAISMFNGQLLFDRPMHVK 238
Score = 39.7 bits (91), Expect = 0.003
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
+FV NL ++L + F + G + I K GK K G V F+ PE A ++N
Sbjct: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMN 674
Query: 72 GIRLYGRPINVQ 83
G++L GR I+V+
Sbjct: 675 GMKLSGREIDVR 686
Score = 38.9 bits (89), Expect = 0.005
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 13 FVGNLEARVREEILYELFLQ-AGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
F+ N+ V+ + L +L + G +T V + D EGK + V FK ES+ A +LN
Sbjct: 74 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 133
Query: 72 GIRLYGRPINVQ 83
L GRP+ V+
Sbjct: 134 KHSLSGRPLKVK 145
>gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a
[Homo sapiens]
Length = 730
Score = 53.1 bits (126), Expect = 3e-07
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 11 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL 70
TVFV NL+ +V + L E+F AG + + I +D++GK + G V F+ AI++
Sbjct: 205 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 264
Query: 71 NGIRLYGRPINVQ 83
NG L+ RP++V+
Sbjct: 265 NGQLLFDRPMHVK 277
Score = 39.7 bits (91), Expect = 0.003
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
+FV NL ++L + F + G + I K GK K G V F+ PE A ++N
Sbjct: 655 IFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMN 713
Query: 72 GIRLYGRPINVQ 83
G++L GR I+V+
Sbjct: 714 GMKLSGREIDVR 725
Score = 38.9 bits (89), Expect = 0.005
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 13 FVGNLEARVREEILYELFLQ-AGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
F+ N+ V+ + L +L + G +T V + D EGK + V FK ES+ A +LN
Sbjct: 74 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 133
Query: 72 GIRLYGRPINVQ 83
L GRP+ V+
Sbjct: 134 KHSLSGRPLKVK 145
>gi|33620747 myelin expression factor 2 [Homo sapiens]
Length = 600
Score = 50.4 bits (119), Expect = 2e-06
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 11 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL 70
T+FV NL+ +V + L E+F AG + + I +D++GK + G V F+ AI++
Sbjct: 234 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 293
Query: 71 NGIRLYGRPINVQ 83
NG L+ RP++V+
Sbjct: 294 NGQFLFDRPMHVK 306
Score = 45.4 bits (106), Expect = 5e-05
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 12 VFVGNLEARVREEILYELFLQ-AGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL 70
VF+ N+ ++ + + +L + G +T V + KD EGK + G V FK E V A+ +
Sbjct: 102 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 161
Query: 71 NGIRLYGRPINVQ 83
N L GRP+N++
Sbjct: 162 NKYDLSGRPLNIK 174
Score = 43.1 bits (100), Expect = 3e-04
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
+FV NL + + L E F Q G + I K GK K G V F PES A ++N
Sbjct: 525 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKACRIMN 583
Query: 72 GIRLYGRPINVQ 83
GI++ GR I+V+
Sbjct: 584 GIKISGREIDVR 595
>gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]
Length = 430
Score = 50.1 bits (118), Expect = 2e-06
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 10 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIA 68
R+VFVGNL +V E + + FL G + V I +D+ G K FG+V F++ +SV A+
Sbjct: 287 RSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK 346
Query: 69 LLNGIRLYGRPINV 82
LN L GR + V
Sbjct: 347 -LNNSELMGRKLRV 359
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 49.7 bits (117), Expect = 3e-06
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL 70
++VG+L + E++L +F G + + + KD + G+ K +GF+ F E A+ L
Sbjct: 231 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 290
Query: 71 NGIRLYGRPINV 82
NG L GRP+ V
Sbjct: 291 NGFELAGRPMRV 302
Score = 42.7 bits (99), Expect = 4e-04
Identities = 34/80 (42%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 6 EEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREG-KPKSFGFVCFKHPESV 63
EE D RTVF L AR+R L + F G + V I DR + K +V F +SV
Sbjct: 127 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 186
Query: 64 SYAIALLNGIRLYGRPINVQ 83
AI L G RL G PI VQ
Sbjct: 187 PLAIG-LTGQRLLGVPIIVQ 205
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 49.7 bits (117), Expect = 3e-06
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL 70
++VG+L + E++L +F G + + + KD + G+ K +GF+ F E A+ L
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324
Query: 71 NGIRLYGRPINV 82
NG L GRP+ V
Sbjct: 325 NGFELAGRPMRV 336
Score = 42.7 bits (99), Expect = 4e-04
Identities = 34/80 (42%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 6 EEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREG-KPKSFGFVCFKHPESV 63
EE D RTVF L AR+R L + F G + V I DR + K +V F +SV
Sbjct: 161 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 220
Query: 64 SYAIALLNGIRLYGRPINVQ 83
AI L G RL G PI VQ
Sbjct: 221 PLAIG-LTGQRLLGVPIIVQ 239
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 49.7 bits (117), Expect = 3e-06
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL 70
++VG+L + E++L +F G + + + KD + G+ K +GF+ F E A+ L
Sbjct: 249 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 308
Query: 71 NGIRLYGRPINV 82
NG L GRP+ V
Sbjct: 309 NGFELAGRPMRV 320
Score = 42.7 bits (99), Expect = 4e-04
Identities = 34/80 (42%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 6 EEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREG-KPKSFGFVCFKHPESV 63
EE D RTVF L AR+R L + F G + V I DR + K +V F +SV
Sbjct: 145 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 204
Query: 64 SYAIALLNGIRLYGRPINVQ 83
AI L G RL G PI VQ
Sbjct: 205 PLAIG-LTGQRLLGVPIIVQ 223
>gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
Length = 382
Score = 49.7 bits (117), Expect = 3e-06
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGK-PKSFGFVCFKHPESVSYAIALL 70
++VG+L+ V E++LY+ F AGPL IC+D + P +G+V F+ P +A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 71 NGIRLYGRPINVQY 84
N + G+P + +
Sbjct: 80 NFDLINGKPFRLMW 93
Score = 48.5 bits (114), Expect = 6e-06
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
VFV N+ + +E L ELF + GP V + +D GK K FGFV ++ E+ A+ L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 72 GIRLYGRPINV 82
G + G+ + V
Sbjct: 261 GKSIDGKVLYV 271
Score = 39.7 bits (91), Expect = 0.003
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
+++ NL+ + +E L E F G +++ + + G+ K FG VCF E + A+ +N
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMN 362
Query: 72 GIRLYGRPINV 82
G + +P++V
Sbjct: 363 GRIVGSKPLHV 373
Score = 38.1 bits (87), Expect = 0.009
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
+F+ NL+ + L+ LF G + + D G K + +V F + + AI +N
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS-KGYAYVHFDSLAAANRAIWHMN 166
Query: 72 GIRLYGRPINV-QYRFGSSRSSE 93
G+RL R + V +++F R++E
Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAE 189
>gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Homo
sapiens]
Length = 200
Score = 49.3 bits (116), Expect = 4e-06
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 11 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIAL 69
+++VG+L V E +LYE F AGP+ + IC+D+ + + +V ++ P A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 70 LNGIRLYGRPINVQY 84
LN + GRP+ + +
Sbjct: 63 LNFDVIKGRPVRIMW 77
Score = 46.2 bits (108), Expect = 3e-05
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
VF+ NL + + LY +F G + + D +G PK +GFV F+ ES AI ++N
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMN 150
Query: 72 GIRLYGRPINVQYRFGSSRSSEP-----ANQSFESCVK 104
G+ L R I V RF S + E A QS + VK
Sbjct: 151 GMFLNYRKIFVG-RFKSHKEREAERGAWARQSTSADVK 187
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 49.3 bits (116), Expect = 4e-06
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKD-REGKPKSFGFVCFKHPESVSYAIALL 70
+FV NL E +L++LF G +T V + +D K K FGFV + + + AIA L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 71 NGIRLYGRPINVQYR 85
NG RL R + V ++
Sbjct: 346 NGYRLGERVLQVSFK 360
Score = 42.4 bits (98), Expect = 5e-04
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 4 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPES 62
A +++ + V L + ++ LF G + + +D+ G+ +GFV + P
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPND 92
Query: 63 VSYAIALLNGIRLYGRPINVQYRFGSSRSSEPAN 96
AI LNG++L + I V Y SS S AN
Sbjct: 93 ADKAINTLNGLKLQTKTIKVSYARPSSASIRDAN 126
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 49.3 bits (116), Expect = 4e-06
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKD-REGKPKSFGFVCFKHPESVSYAIALL 70
+FV NL E +L++LF G +T V + +D K K FGFV + + + AIA L
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 71 NGIRLYGRPINVQYR 85
NG RL R + V ++
Sbjct: 339 NGYRLGERVLQVSFK 353
Score = 42.4 bits (98), Expect = 5e-04
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 4 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPES 62
A +++ + V L + ++ LF G + + +D+ G+ +GFV + P
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPND 92
Query: 63 VSYAIALLNGIRLYGRPINVQYRFGSSRSSEPAN 96
AI LNG++L + I V Y SS S AN
Sbjct: 93 ADKAINTLNGLKLQTKTIKVSYARPSSASIRDAN 126
>gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo
sapiens]
Length = 200
Score = 49.3 bits (116), Expect = 4e-06
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 11 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIAL 69
+++VG+L V E +LYE F AGP+ + IC+D+ + + +V ++ P A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 70 LNGIRLYGRPINVQY 84
LN + GRP+ + +
Sbjct: 63 LNFDVIKGRPVRIMW 77
Score = 46.2 bits (108), Expect = 3e-05
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
VF+ NL + + LY +F G + + D +G PK +GFV F+ ES AI ++N
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMN 150
Query: 72 GIRLYGRPINVQYRFGSSRSSEP-----ANQSFESCVK 104
G+ L R I V RF S + E A QS + VK
Sbjct: 151 GMFLNYRKIFVG-RFKSHKEREAERGAWARQSTSADVK 187
>gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]
Length = 322
Score = 49.3 bits (116), Expect = 4e-06
Identities = 59/276 (21%), Positives = 109/276 (39%), Gaps = 19/276 (6%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL 70
+F+G L + E + +F Q G + + + +D++ GK K F F+C++ S A+
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 71 NGIRLYGRPINVQY--RFGSSRSSEPANQSFESCVKINSHNYRNEEMLVGRSSFPMQYFP 128
NGI++ GR I V + + + + SE +I+ + +E G +
Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPKDSE----------EIDDVTRQLQEKGCGARTPSPSLSE 147
Query: 129 INNTSLPQEYFLFQKMQWHVYNPVLQLPYYEMTAPLPNSASVSSSLNHVPDLEAGPSSYK 188
+ P + K + + E+ A P+S+S D + GP +
Sbjct: 148 SSEDEKPTKKHKKDKKEKKKKKKEKEKADREVQAEQPSSSSPRRKTVKEKD-DTGPKKHS 206
Query: 189 WTHQQPSDSDLYQMTAPLPNSASVSSSLNHVPDLEAGPSSYKWTHQQPSDSDLYQMNKRK 248
+ + + + LP S + S DLE K H+ S S ++
Sbjct: 207 SKNSERAQKSEPREGQKLPKSRTAYS--GGAEDLERELKKEKPKHEHKSSSRREAREEKT 264
Query: 249 R---QKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY 281
R + ++SD+ SS N R S + R + K +
Sbjct: 265 RIRDRGRSSDAHSSWYNGRSEGRSYRSRSRSRDKSH 300
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 48.9 bits (115), Expect = 5e-06
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
V++ N V +E L ELF Q G V + +D GK K FGFV ++ E + A+ +N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 72 GIRLYGRPINV 82
G + G+ I V
Sbjct: 253 GKEISGKIIFV 263
Score = 47.0 bits (110), Expect = 2e-05
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 11 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIAL 69
+++VG+L + V E +LYE F AGP+ + +C+D + + +V F+ P A+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 70 LNGIRLYGRPINVQY 84
+N + G+PI + +
Sbjct: 72 MNFDVIKGKPIRIMW 86
Score = 45.1 bits (105), Expect = 7e-05
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
+++ NL+ + +E L + F G +T + + +G+ K FGFVCF PE + A+ +N
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 72 GIRLYGRPINV 82
G + +P+ V
Sbjct: 355 GRIVGSKPLYV 365
Score = 39.7 bits (91), Expect = 0.003
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
VF+ NL+ + + LY+ F G + + D G K + FV F+ E+ AI +N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMN 159
Query: 72 GIRLYGRPINVQYRFGSSRSSE 93
G+ L R + V RF S + E
Sbjct: 160 GMLLNDRKVFVG-RFKSRKERE 180
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 48.9 bits (115), Expect = 5e-06
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
V++ N V +E L ELF Q G V + +D GK K FGFV ++ E + A+ +N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 72 GIRLYGRPINV 82
G + G+ I V
Sbjct: 253 GKEISGKIIFV 263
Score = 47.0 bits (110), Expect = 2e-05
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 11 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIAL 69
+++VG+L + V E +LYE F AGP+ + +C+D + + +V F+ P A+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 70 LNGIRLYGRPINVQY 84
+N + G+PI + +
Sbjct: 72 MNFDVIKGKPIRIMW 86
Score = 45.1 bits (105), Expect = 7e-05
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
+++ NL+ + +E L + F G +T + + +G+ K FGFVCF PE + A+ +N
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 72 GIRLYGRPINV 82
G + +P+ V
Sbjct: 355 GRIVGSKPLYV 365
Score = 39.7 bits (91), Expect = 0.003
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
VF+ NL+ + + LY+ F G + + D G K + FV F+ E+ AI +N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMN 159
Query: 72 GIRLYGRPINVQYRFGSSRSSE 93
G+ L R + V RF S + E
Sbjct: 160 GMLLNDRKVFVG-RFKSRKERE 180
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 48.9 bits (115), Expect = 5e-06
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
V++ N V +E L ELF Q G V + +D GK K FGFV ++ E + A+ +N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 72 GIRLYGRPINV 82
G + G+ I V
Sbjct: 253 GKEISGKIIFV 263
Score = 47.0 bits (110), Expect = 2e-05
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 11 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIAL 69
+++VG+L + V E +LYE F AGP+ + +C+D + + +V F+ P A+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 70 LNGIRLYGRPINVQY 84
+N + G+PI + +
Sbjct: 72 MNFDVIKGKPIRIMW 86
Score = 45.1 bits (105), Expect = 7e-05
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
+++ NL+ + +E L + F G +T + + +G+ K FGFVCF PE + A+ +N
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 72 GIRLYGRPINV 82
G + +P+ V
Sbjct: 355 GRIVGSKPLYV 365
Score = 39.7 bits (91), Expect = 0.003
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
VF+ NL+ + + LY+ F G + + D G K + FV F+ E+ AI +N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMN 159
Query: 72 GIRLYGRPINVQYRFGSSRSSE 93
G+ L R + V RF S + E
Sbjct: 160 GMLLNDRKVFVG-RFKSRKERE 180
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 48.9 bits (115), Expect = 5e-06
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 11 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIAL 69
+++VG+L V E +LYE F AGP+ + IC+D ++ +V F+H + +A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 70 LNGIRLYGRPINVQY 84
+N + G+P+ + +
Sbjct: 72 MNFDVIKGKPVRIMW 86
Score = 48.5 bits (114), Expect = 6e-06
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
V++ N + +E L +LF + GP V + D GK K FGFV F+ E A+ +N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 72 GIRLYGRPINV 82
G L G+ I V
Sbjct: 253 GKELNGKQIYV 263
Score = 44.3 bits (103), Expect = 1e-04
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
++V NL+ + +E L + F G +T + + G+ K FGFVCF PE + A+ +N
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 72 GIRLYGRPINV 82
G + +P+ V
Sbjct: 355 GRIVATKPLYV 365
Score = 43.1 bits (100), Expect = 3e-04
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
+FV NL+ + + LY+ G + + D G K +GFV F+ E+ AI +N
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIKKMN 159
Query: 72 GIRLYGRPINV-QYRFGSSRSSE 93
G+ L GR + V Q++ R +E
Sbjct: 160 GMLLNGRKVFVGQFKSRKEREAE 182
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 48.5 bits (114), Expect = 6e-06
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
V++ N + +E L +LF + GP V + D GK K FGFV F+ E A+ +N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 72 GIRLYGRPINV 82
G L G+ I V
Sbjct: 253 GKELNGKQIYV 263
Score = 46.2 bits (108), Expect = 3e-05
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 11 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIAL 69
+++VG+L V E +LYE F AGP+ + +C+D + + +V F+ P A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 70 LNGIRLYGRPINVQY 84
+N + G+P+ + +
Sbjct: 72 MNFDVIKGKPVRIMW 86
Score = 43.5 bits (101), Expect = 2e-04
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
++V NL+ + +E L + F G +T + + G+ K FGFVCF PE + A+ +N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 72 GIRLYGRPINV 82
G + +P+ V
Sbjct: 355 GRIVATKPLYV 365
Score = 41.6 bits (96), Expect = 8e-04
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
+F+ NL+ + + LY+ F G + + D G K +GFV F+ E+ AI +N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMN 159
Query: 72 GIRLYGRPINVQYRFGSSRSSE 93
G+ L R + V RF S + E
Sbjct: 160 GMLLNDRKVFVG-RFKSRKERE 180
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,716,931
Number of Sequences: 37866
Number of extensions: 562812
Number of successful extensions: 2196
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 1782
Number of HSP's gapped (non-prelim): 482
length of query: 281
length of database: 18,247,518
effective HSP length: 101
effective length of query: 180
effective length of database: 14,423,052
effective search space: 2596149360
effective search space used: 2596149360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.