Guide to the Human Genome
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Name: RBM11 Sequence: fasta or formatted (281aa) NCBI GI: 169234630
Description:

RNA binding motif protein 11

Referenced in:

RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         13           1
 C cysteine            1.4          4           1
 D aspartate           3.9         11           1
 E glutamate           6.0         17           2
 F phenylalanine       4.6         13           1
 G glycine             3.9         11           1
 H histidine           2.5          7           1
 I isoleucine          2.5          7           1
 K lysine              6.4         18           4
 L leucine             7.5         21           2
 M methionine          2.5          7           1
 N asparagine          6.4         18           2
 P proline             7.5         21           1
 Q glutamine           6.4         18           2
 R arginine            5.3         15           1
 S serine             13.2         37           3
 T threonine           3.6         10           1
 V valine              5.3         15           1
 W tryptophan          1.1          3           1
 Y tyrosine            5.3         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 11 
RBM7                  0.175   RNA binding motif protein 7 
SF3B4                 0.088   splicing factor 3b, subunit 4 
RBM3                  0.060   RNA binding motif protein 3 
CSTF2                 0.058   cleavage stimulation factor subunit 2 
CSTF2T                0.054   cleavage stimulation factor, 3' pre-RNA, subunit 2, ...
RBMY1F                0.054   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1J                0.054   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1A1               0.052   RNA binding motif protein, Y-linked, family 1, member...
RBMY1E                0.052   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1B                0.052   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1D                0.052   RNA binding motif protein, Y-linked, family 1, membe...
HNRNPM                0.052   heterogeneous nuclear ribonucleoprotein M isoform b...
HNRNPM                0.051   heterogeneous nuclear ribonucleoprotein M isoform a ...
MYEF2                 0.045   myelin expression factor 2 
RBM34                 0.045   RNA binding motif protein 34 isoform 1 
RBM23                 0.045   RNA binding motif protein 23 isoform 3 
RBM23                 0.045   RNA binding motif protein 23 isoform 1 
RBM23                 0.045   RNA binding motif protein 23 isoform 2 
PABPC5                0.045   poly(A) binding protein, cytoplasmic 5 
PABPC1L2B             0.043   poly(A) binding protein, cytoplasmic 1-like 2B [Hom...
ELAVL3                0.043   ELAV-like protein 3 isoform 1 
ELAVL3                0.043   ELAV-like protein 3 isoform 2 
PABPC1L2A             0.043   poly(A) binding protein, cytoplasmic 1-like 2A [Homo...
RBMX2                 0.043   RNA binding motif protein, X-linked 2 
PABPC4                0.043   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.043   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.043   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
PABPC3                0.043   poly(A) binding protein, cytoplasmic 3 
PABPC1                0.043   poly(A) binding protein, cytoplasmic 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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