Guide to the Human Genome
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Name: LOC100133402 Sequence: fasta or formatted (421aa) NCBI GI: 169218303
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         38           2
 C cysteine            9.5         40           2
 D aspartate           3.3         14           1
 E glutamate           1.0          4           1
 F phenylalanine       1.2          5           1
 G glycine            14.0         59           2
 H histidine           2.4         10           1
 I isoleucine          1.9          8           1
 K lysine              0.0          0           0
 L leucine            11.6         49           2
 M methionine          2.6         11           1
 N asparagine          0.0          0           0
 P proline             5.5         23           1
 Q glutamine           5.5         23           1
 R arginine            4.8         20           1
 S serine              9.0         38           2
 T threonine           1.9          8           1
 V valine             10.7         45           2
 W tryptophan          5.5         23           1
 Y tyrosine            0.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
IGFBP2                0.017   insulin-like growth factor binding protein 2, 36kDa ...
KRTAP5-5              0.016   keratin associated protein 5-5 
KRTAP5-2              0.012   keratin associated protein 5-2 
KRTAP5-1              0.011   keratin associated protein 5-1 
TNXB                  0.011   tenascin XB isoform 1 precursor 
SRCRB4D               0.011   scavenger receptor cysteine rich domain containing, ...
KRTAP5-4              0.010   keratin associated protein 5-4 
LOC284297             0.009   hypothetical protein LOC284297 
KRTAP5-10             0.009   keratin associated protein 5-10 
LRRC26                0.007   leucine rich repeat containing 26 
KRTAP5-7              0.007   keratin associated protein 5-7 
LOC643368             0.007   PREDICTED: similar to hCG1803335 
LOC100292407          0.006   PREDICTED: hypothetical protein 
LOC643368             0.006   PREDICTED: similar to hCG1803335 
MEGF10                0.006   multiple EGF-like-domains 10 
NR0B1                 0.006   nuclear receptor subfamily 0, group B, member 1 [Homo...
NEK9                  0.006   NIMA-related kinase 9 
KRTAP10-4             0.006   keratin associated protein 10-4 
KRTAP5-3              0.004   keratin associated protein 5-3 
LOC100289850          0.004   PREDICTED: hypothetical protein XP_002347377 
LOC100289282          0.004   PREDICTED: hypothetical protein XP_002343215 
POU5F2                0.004   POU domain class 5, transcription factor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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