Guide to the Human Genome
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Name: LOC652634 Sequence: fasta or formatted (287aa) NCBI GI: 169218177
Description:

PREDICTED: similar to fem-1 homolog a, partial

Referenced in:

Ankyrin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         29           2
 C cysteine            2.4          7           1
 D aspartate           5.6         16           1
 E glutamate           5.6         16           2
 F phenylalanine       4.5         13           1
 G glycine             4.9         14           1
 H histidine           3.1          9           1
 I isoleucine          4.2         12           2
 K lysine              5.6         16           2
 L leucine            12.5         36           2
 M methionine          2.1          6           1
 N asparagine          4.5         13           2
 P proline             5.6         16           1
 Q glutamine           4.2         12           2
 R arginine            4.9         14           1
 S serine              5.2         15           2
 T threonine           5.2         15           2
 V valine              4.9         14           2
 W tryptophan          0.7          2           1
 Y tyrosine            4.2         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to fem-1 homolog a, partial [Hom... 
FEM1A                 0.912   fem-1 homolog a 
FEM1C                 0.604   feminization 1 homolog a 
FEM1B                 0.189   fem-1 homolog b 
ANKRD54               0.045   ankyrin repeat domain 54 
ANK1                  0.043   ankyrin 1 isoform 9 
ANK1                  0.043   ankyrin 1 isoform 1 
ANK1                  0.043   ankyrin 1 isoform 3 
ANK1                  0.043   ankyrin 1 isoform 2 
ANK1                  0.043   ankyrin 1 isoform 4 
ANKK1                 0.041   ankyrin repeat and kinase domain containing 1 
DAPK1                 0.039   death-associated protein kinase 1 
ANK2                  0.039   ankyrin 2 isoform 3 
ANK2                  0.039   ankyrin 2 isoform 2 
ANK2                  0.039   ankyrin 2 isoform 1 
ANKRD53               0.037   ankyrin repeat domain 53 isoform a 
ANKRD53               0.037   ankyrin repeat domain 53 isoform b 
ANKRD44               0.037   ankyrin repeat domain 44 
ANKRD28               0.036   ankyrin repeat domain 28 
MIB1                  0.036   mindbomb homolog 1 
NFKBIA                0.034   nuclear factor of kappa light polypeptide gene enhan...
LOC100133890          0.034   PREDICTED: similar to Shank2E 
SHANK2                0.034   SH3 and multiple ankyrin repeat domains 2 isoform 1...
ANK3                  0.034   ankyrin 3 isoform 1 
NFKBIE                0.034   nuclear factor of kappa light polypeptide gene enhan...
ANKRD7                0.032   ankyrin repeat domain 7 
ANKRD17               0.032   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.032   ankyrin repeat domain protein 17 isoform b 
ANKHD1                0.032   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.032   ANKHD1-EIF4EBP3 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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