Guide to the Human Genome
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Name: LOC652799 Sequence: fasta or formatted (245aa) NCBI GI: 169218115
Description:

PREDICTED: similar to KIT protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         11           2
 C cysteine            2.0          5           1
 D aspartate           4.1         10           1
 E glutamate           5.7         14           1
 F phenylalanine       5.7         14           1
 G glycine             6.1         15           2
 H histidine           2.0          5           1
 I isoleucine          5.7         14           2
 K lysine              5.7         14           1
 L leucine             7.8         19           2
 M methionine          2.9          7           2
 N asparagine          6.9         17           2
 P proline             5.7         14           2
 Q glutamine           3.3          8           2
 R arginine            3.3          8           2
 S serine              6.5         16           2
 T threonine           7.3         18           2
 V valine              8.6         21           2
 W tryptophan          1.2          3           1
 Y tyrosine            4.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to KIT protein 
KIT                   0.948   v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene...
KIT                   0.917   v-kit Hardy-Zuckerman 4 feline sarcoma viral oncoge...
CSF1R                 0.187   colony stimulating factor 1 receptor precursor [Homo...
PDGFRB                0.071   platelet-derived growth factor receptor beta precurso...
PDGFRA                0.071   platelet-derived growth factor receptor alpha precurs...
FLT3                  0.044   fms-related tyrosine kinase 3 
DSCAM                 0.041   Down syndrome cell adhesion molecule isoform CHD2-42...
FLT1                  0.039   fms-related tyrosine kinase 1 isoform 1 precursor [...
FLT1                  0.039   fms-related tyrosine kinase 1 isoform 2 precursor [...
FLT1                  0.039   fms-related tyrosine kinase 1 isoform 4 precursor [...
FLT1                  0.039   fms-related tyrosine kinase 1 isoform 3 precursor [...
PTK7                  0.035   PTK7 protein tyrosine kinase 7 isoform d precursor [...
PTK7                  0.035   PTK7 protein tyrosine kinase 7 isoform a precursor [...
CHL1                  0.031   cell adhesion molecule with homology to L1CAM precur...
IGSF10                0.031   immunoglobulin superfamily, member 10 
TTN                   0.029   titin isoform N2-A 
HMCN2                 0.029   PREDICTED: hemicentin 2 
HMCN2                 0.029   PREDICTED: hemicentin 2 
HMCN2                 0.029   PREDICTED: hemicentin 2 
PTK7                  0.029   PTK7 protein tyrosine kinase 7 isoform c precursor [...
PTK7                  0.029   PTK7 protein tyrosine kinase 7 isoform b precursor [...
LOC100292387          0.029   PREDICTED: similar to hemicentin 2 
CNTN5                 0.029   contactin 5 isoform long 
CNTN5                 0.029   contactin 5 isoform short 
NCAM1                 0.027   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.027   neural cell adhesion molecule 1 isoform 3 
NEGR1                 0.027   neuronal growth regulator 1 
LOC100289200          0.025   PREDICTED: hypothetical protein XP_002342997 
LSAMP                 0.025   limbic system-associated membrane protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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