Guide to the Human Genome
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Name: PDGFRA Sequence: fasta or formatted (1089aa) NCBI GI: 5453870
Description:

platelet-derived growth factor receptor alpha precursor

Referenced in:

Platelets and Megakaryocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         54           3
 C cysteine            1.6         17           1
 D aspartate           6.1         66           3
 E glutamate           8.6         94           3
 F phenylalanine       2.9         32           1
 G glycine             5.3         58           2
 H histidine           2.3         25           2
 I isoleucine          6.4         70           2
 K lysine              6.3         69           3
 L leucine             9.6        104           2
 M methionine          2.4         26           2
 N asparagine          4.0         44           2
 P proline             4.7         51           3
 Q glutamine           2.3         25           1
 R arginine            4.0         44           1
 S serine              8.5         93           4
 T threonine           6.2         68           2
 V valine              8.2         89           2
 W tryptophan          1.2         13           1
 Y tyrosine            4.3         47           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   platelet-derived growth factor receptor alpha precurs... 
PDGFRB                0.399   platelet-derived growth factor receptor beta precurso...
KIT                   0.237   v-kit Hardy-Zuckerman 4 feline sarcoma viral oncoge...
KIT                   0.236   v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene...
CSF1R                 0.217   colony stimulating factor 1 receptor precursor [Homo...
FLT3                  0.185   fms-related tyrosine kinase 3 
FLT1                  0.163   fms-related tyrosine kinase 1 isoform 1 precursor [...
KDR                   0.158   kinase insert domain receptor precursor 
FLT4                  0.154   fms-related tyrosine kinase 4 isoform 1 precursor [...
FLT4                  0.154   fms-related tyrosine kinase 4 isoform 2 precursor [...
RET                   0.080   ret proto-oncogene isoform c 
RET                   0.080   ret proto-oncogene isoform a 
FGFR1                 0.080   fibroblast growth factor receptor 1 isoform 4 precur...
FGFR1                 0.080   fibroblast growth factor receptor 1 isoform 3 precur...
FGFR1                 0.080   fibroblast growth factor receptor 1 isoform 2 precur...
FGFR1                 0.080   fibroblast growth factor receptor 1 isoform 1 precu...
FGFR2                 0.078   fibroblast growth factor receptor 2 isoform 9 precu...
FGFR2                 0.078   fibroblast growth factor receptor 2 isoform 3 precu...
FGFR2                 0.078   fibroblast growth factor receptor 2 isoform 8 precu...
FGFR2                 0.078   fibroblast growth factor receptor 2 isoform 7 precu...
FGFR2                 0.078   fibroblast growth factor receptor 2 isoform 6 precu...
FGFR2                 0.078   fibroblast growth factor receptor 2 isoform 5 precu...
FGFR2                 0.078   fibroblast growth factor receptor 2 isoform 4 precu...
FGFR2                 0.078   fibroblast growth factor receptor 2 isoform 1 precu...
FGFR2                 0.078   fibroblast growth factor receptor 2 isoform 2 precu...
FGFR3                 0.078   fibroblast growth factor receptor 3 isoform 3 precu...
FGFR3                 0.078   fibroblast growth factor receptor 3 isoform 2 precur...
FGFR3                 0.078   fibroblast growth factor receptor 3 isoform 1 precurs...
FGFR4                 0.075   fibroblast growth factor receptor 4 isoform 2 precur...
FGFR4                 0.075   fibroblast growth factor receptor 4 isoform 1 precur...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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