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Search of human proteins with 169218027
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169218027 PREDICTED: similar to tubulin, gamma 1 [Homo
sapiens]
(158 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31543831 tubulin, gamma 1 [Homo sapiens] 322 1e-88
gi|169218027 PREDICTED: similar to tubulin, gamma 1 [Homo sapiens] 322 1e-88
gi|7706751 tubulin, gamma 2 [Homo sapiens] 308 1e-84
gi|14210536 tubulin, beta 6 [Homo sapiens] 56 1e-08
gi|50592996 tubulin, beta, 4 [Homo sapiens] 55 3e-08
gi|29788768 tubulin, beta 2B [Homo sapiens] 53 1e-07
gi|4507729 tubulin, beta 2 [Homo sapiens] 53 1e-07
gi|13562114 beta tubulin 1, class VI [Homo sapiens] 52 2e-07
gi|5174735 tubulin, beta, 2 [Homo sapiens] 52 2e-07
gi|29788785 tubulin, beta [Homo sapiens] 52 3e-07
gi|42558279 tubulin, beta 8 [Homo sapiens] 51 4e-07
gi|21361322 tubulin, beta 4 [Homo sapiens] 51 5e-07
gi|13376181 tubulin, alpha-like 3 [Homo sapiens] 49 2e-06
gi|156564363 tubulin, alpha 3d [Homo sapiens] 46 1e-05
gi|17921993 tubulin, alpha 3c [Homo sapiens] 46 1e-05
gi|17986283 tubulin, alpha 1a [Homo sapiens] 46 2e-05
gi|9507215 tubulin, alpha 8 [Homo sapiens] 46 2e-05
gi|57013276 tubulin, alpha, ubiquitous [Homo sapiens] 45 2e-05
gi|17921989 tubulin, alpha 4a [Homo sapiens] 45 2e-05
gi|14389309 tubulin alpha 6 [Homo sapiens] 45 2e-05
gi|55770868 tubulin, beta polypeptide 4, member Q [Homo sapiens] 45 3e-05
gi|46409270 tubulin, alpha 3e [Homo sapiens] 45 3e-05
gi|169178090 PREDICTED: similar to hCG1784562 [Homo sapiens] 37 0.009
gi|169179398 PREDICTED: similar to hCG1784562 [Homo sapiens] 37 0.009
gi|169181282 PREDICTED: similar to hCG1784562 [Homo sapiens] 37 0.009
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 31 0.50
gi|67782356 corneodesmosin precursor [Homo sapiens] 30 0.66
gi|41281808 harmonin isoform b3 [Homo sapiens] 28 3.3
gi|71480164 harmonin isoform a [Homo sapiens] 28 3.3
gi|11276085 UDP glycosyltransferase 1 family, polypeptide A9 pre... 28 3.3
>gi|31543831 tubulin, gamma 1 [Homo sapiens]
Length = 451
Score = 322 bits (824), Expect = 1e-88
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP 60
MRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP
Sbjct: 294 MRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP 353
Query: 61 ASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDM 120
ASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDM
Sbjct: 354 ASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDM 413
Query: 121 FKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQ 158
FKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQ
Sbjct: 414 FKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQ 451
>gi|169218027 PREDICTED: similar to tubulin, gamma 1 [Homo sapiens]
Length = 158
Score = 322 bits (824), Expect = 1e-88
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP 60
MRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP
Sbjct: 1 MRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP 60
Query: 61 ASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDM 120
ASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDM
Sbjct: 61 ASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDM 120
Query: 121 FKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQ 158
FKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQ
Sbjct: 121 FKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQ 158
>gi|7706751 tubulin, gamma 2 [Homo sapiens]
Length = 451
Score = 308 bits (789), Expect = 1e-84
Identities = 149/158 (94%), Positives = 156/158 (98%)
Query: 1 MRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP 60
MRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP
Sbjct: 294 MRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP 353
Query: 61 ASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDM 120
ASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFE +C+Q+DKLRKR+AFLEQFRKEDM
Sbjct: 354 ASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKEDM 413
Query: 121 FKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQ 158
FKDNFDEMD SRE+VQ+LIDEYHAAT+PDYISWGTQEQ
Sbjct: 414 FKDNFDEMDRSREVVQELIDEYHAATQPDYISWGTQEQ 451
>gi|14210536 tubulin, beta 6 [Homo sapiens]
Length = 446
Score = 55.8 bits (133), Expect = 1e-08
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+ + + +G + +V + + I+ + + F+ W P +++VA+ P +++
Sbjct: 310 YLTVATVFRGPMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVC---DIPPRGLKMAST 366
Query: 84 MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYH 143
+ N T+I LF+R Q+ + +R+AFL F E M + F E +++ + +Y
Sbjct: 367 FIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
Query: 144 AATRPD 149
AT D
Sbjct: 427 DATAND 432
>gi|50592996 tubulin, beta, 4 [Homo sapiens]
Length = 450
Score = 54.7 bits (130), Expect = 3e-08
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+ + + +G + +V + + I+ + + F+ W P +++VA+ P ++S
Sbjct: 310 YLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVC---DIPPRGLKMSST 366
Query: 84 MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYH 143
+ N T+I LF+R Q+ + +R+AFL + E M + F E +++ + +Y
Sbjct: 367 FIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
Query: 144 AAT 146
AT
Sbjct: 427 DAT 429
>gi|29788768 tubulin, beta 2B [Homo sapiens]
Length = 445
Score = 52.8 bits (125), Expect = 1e-07
Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+ + I +G + +V + + ++ + + F+ W P +++ A+ P ++S
Sbjct: 310 YLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVC---DIPPRGLKMSAT 366
Query: 84 MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYH 143
+ N T+I LF+R Q+ + +R+AFL + E M + F E +++ + +Y
Sbjct: 367 FIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
Query: 144 AAT 146
AT
Sbjct: 427 DAT 429
>gi|4507729 tubulin, beta 2 [Homo sapiens]
Length = 445
Score = 52.8 bits (125), Expect = 1e-07
Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+ + I +G + +V + + ++ + + F+ W P +++ A+ P ++S
Sbjct: 310 YLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVC---DIPPRGLKMSAT 366
Query: 84 MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYH 143
+ N T+I LF+R Q+ + +R+AFL + E M + F E +++ + +Y
Sbjct: 367 FIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
Query: 144 AAT 146
AT
Sbjct: 427 DAT 429
>gi|13562114 beta tubulin 1, class VI [Homo sapiens]
Length = 451
Score = 52.4 bits (124), Expect = 2e-07
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+ + I +G++ +V + L ++ R + F+ W P +++VA+ P ++
Sbjct: 310 YLTVACIFRGKMSTKEVDQQLLSVQTRNSSCFVEWIPNNVKVAVC---DIPPRGLSMAAT 366
Query: 84 MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEY 142
+ N+T+I +F R + + KR+AF+ + E M + F E + + + L+ EY
Sbjct: 367 FIGNNTAIQEIFNRVSEHFSAMFKRKAFVHWYTSEGMDINEFGEAENN---IHDLVSEY 422
>gi|5174735 tubulin, beta, 2 [Homo sapiens]
Length = 445
Score = 52.4 bits (124), Expect = 2e-07
Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+ + + +G + +V + + ++ + + F+ W P +++ A+ P ++S
Sbjct: 310 YLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVC---DIPPRGLKMSAT 366
Query: 84 MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYH 143
+ N T+I LF+R Q+ + +R+AFL + E M + F E +++ + +Y
Sbjct: 367 FIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
Query: 144 AAT 146
AT
Sbjct: 427 DAT 429
>gi|29788785 tubulin, beta [Homo sapiens]
Length = 444
Score = 51.6 bits (122), Expect = 3e-07
Identities = 27/135 (20%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+ + + +G + +V + + ++ + + F+ W P +++ A+ P +++
Sbjct: 310 YLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVC---DIPPRGLKMAVT 366
Query: 84 MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYH 143
+ N T+I LF+R Q+ + +R+AFL + E M + F E +++ + +Y
Sbjct: 367 FIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
Query: 144 AATRPDYISWGTQEQ 158
AT + +G + +
Sbjct: 427 DATAEEEEDFGEEAE 441
>gi|42558279 tubulin, beta 8 [Homo sapiens]
Length = 444
Score = 51.2 bits (121), Expect = 4e-07
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+ I +G + +V + + I+++ + F W P +++ A+ P ++S
Sbjct: 310 YLTAAAIFRGRMPMREVDEQMFNIQDKNSSYFADWLPNNVKTAVC---DIPPRGLKMSAT 366
Query: 84 MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYH 143
+ N+T+I LF+R Q+ + +R+AFL + E M + F E +++ + +Y
Sbjct: 367 FIGNNTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
Query: 144 AAT 146
AT
Sbjct: 427 DAT 429
>gi|21361322 tubulin, beta 4 [Homo sapiens]
Length = 444
Score = 50.8 bits (120), Expect = 5e-07
Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+ + + +G + +V + + ++ + + F+ W P +++ A+ P +++
Sbjct: 310 YLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVC---DIPPRGLKMAAT 366
Query: 84 MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYH 143
+ N T+I LF+R Q+ + +R+AFL + E M + F E +++ + +Y
Sbjct: 367 FIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
Query: 144 AAT 146
AT
Sbjct: 427 DAT 429
>gi|13376181 tubulin, alpha-like 3 [Homo sapiens]
Length = 446
Score = 48.5 bits (114), Expect = 2e-06
Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPY------LPSA 77
Y+A + +G+V P +V+ ++ + R F+ W P +V ++ + P L
Sbjct: 319 YMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFKVGINNRPPTVMPGGDLAKV 378
Query: 78 HRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQ 137
HR S M++N T+I + R ++D + + AFL + +E M + F E +RE +
Sbjct: 379 HR-SICMLSNTTAIVEAWARLDHKFDLMYAKRAFLHWYLREGMEEAEFLE---AREDLAA 434
Query: 138 LIDEY 142
L +Y
Sbjct: 435 LERDY 439
>gi|156564363 tubulin, alpha 3d [Homo sapiens]
Length = 450
Score = 46.2 bits (108), Expect = 1e-05
Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+A + +G+V P V+ ++ I+ ++ F+ W P +V ++ + P + ++ +
Sbjct: 312 YMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 84 -----MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQL 138
M++N T+I+ + R ++D + + AF+ + E M + F E +RE + L
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDLAAL 428
Query: 139 IDEY 142
+Y
Sbjct: 429 EKDY 432
>gi|17921993 tubulin, alpha 3c [Homo sapiens]
Length = 450
Score = 46.2 bits (108), Expect = 1e-05
Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+A + +G+V P V+ ++ I+ ++ F+ W P +V ++ + P + ++ +
Sbjct: 312 YMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 84 -----MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQL 138
M++N T+I+ + R ++D + + AF+ + E M + F E +RE + L
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDLAAL 428
Query: 139 IDEY 142
+Y
Sbjct: 429 EKDY 432
>gi|17986283 tubulin, alpha 1a [Homo sapiens]
Length = 451
Score = 45.8 bits (107), Expect = 2e-05
Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+A + +G+V P V+ ++ I+ ++ F+ W P +V ++ + P + ++ +
Sbjct: 312 YMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 84 -----MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQL 138
M++N T+I+ + R ++D + + AF+ + E M + F E +RE + L
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDMAAL 428
Query: 139 IDEY 142
+Y
Sbjct: 429 EKDY 432
>gi|9507215 tubulin, alpha 8 [Homo sapiens]
Length = 449
Score = 45.8 bits (107), Expect = 2e-05
Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+A + +G+V P V+ ++ I+ ++ F+ W P +V ++ + P + ++ +
Sbjct: 312 YMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 84 -----MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQL 138
M++N T+I+ + R ++D + + AF+ + E M + F E +RE + L
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDLAAL 428
Query: 139 IDEY 142
+Y
Sbjct: 429 EKDY 432
>gi|57013276 tubulin, alpha, ubiquitous [Homo sapiens]
Length = 451
Score = 45.4 bits (106), Expect = 2e-05
Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+A + +G+V P V+ ++ I+ ++ F+ W P +V ++ + P + ++ +
Sbjct: 312 YMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 84 -----MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQL 138
M++N T+I+ + R ++D + + AF+ + E M + F E +RE + L
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDMAAL 428
Query: 139 IDEY 142
+Y
Sbjct: 429 EKDY 432
>gi|17921989 tubulin, alpha 4a [Homo sapiens]
Length = 448
Score = 45.4 bits (106), Expect = 2e-05
Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+A + +G+V P V+ ++ I+ ++ F+ W P +V ++ + P + ++ +
Sbjct: 312 YMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 84 -----MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQL 138
M++N T+I+ + R ++D + + AF+ + E M + F E +RE + L
Sbjct: 372 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDMAAL 428
Query: 139 IDEY 142
+Y
Sbjct: 429 EKDY 432
>gi|14389309 tubulin alpha 6 [Homo sapiens]
Length = 449
Score = 45.4 bits (106), Expect = 2e-05
Identities = 27/124 (21%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+A + +G+V P V+ ++ I+ ++ F+ W P +V ++ + P + ++ +
Sbjct: 312 YMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 84 -----MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQL 138
M++N T+++ + R ++D + + AF+ + E M + F E +RE + L
Sbjct: 372 QRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDMAAL 428
Query: 139 IDEY 142
+Y
Sbjct: 429 EKDY 432
>gi|55770868 tubulin, beta polypeptide 4, member Q [Homo sapiens]
Length = 434
Score = 45.1 bits (105), Expect = 3e-05
Identities = 33/145 (22%), Positives = 69/145 (47%), Gaps = 7/145 (4%)
Query: 2 RRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPA 61
+++ KN+M + RD + Y+ I QG + +V + + I+++ + F W P
Sbjct: 291 QQMFDAKNMMAA--RDPRHGR-YLTAAAIFQGRMPMREVDEQMFNIQDKNSSYFADWFPN 347
Query: 62 SIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMF 121
+++ A+ P+ ++S N+T++ L +R Q+ +R+AFL + E M
Sbjct: 348 NVKTAVCDIPPW---GLKMSVTFTGNNTAVQEL-KRVSEQFTATFRRKAFLHWYTGEGMD 403
Query: 122 KDNFDEMDTSREIVQQLIDEYHAAT 146
+ F E +++ + +Y AT
Sbjct: 404 EMEFTEAESNMNDLVSEYQQYQDAT 428
>gi|46409270 tubulin, alpha 3e [Homo sapiens]
Length = 450
Score = 45.1 bits (105), Expect = 3e-05
Identities = 24/109 (22%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 24 YIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL 83
Y+A + +G+V P V+ ++ I+ ++ F+ W P +V ++ + P + ++ +
Sbjct: 312 YMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 371
Query: 84 -----MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDE 127
M++N T+I+ + R ++D + + AF+ + E M + F E
Sbjct: 372 QRAVCMLSNTTAIAEAWARLVHKFDLMYAKWAFVHWYVGEGMEEGEFSE 420
>gi|169178090 PREDICTED: similar to hCG1784562 [Homo sapiens]
Length = 316
Score = 36.6 bits (83), Expect = 0.009
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 23 CYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSG 82
CY+ I+ G + +V + I+ + + F W P +++ A P ++S
Sbjct: 201 CYLMAAPIVGGCMSMREVDEQTYNIQNKYSSYFAHWIPHNVERA---ACDIPPLELKMSV 257
Query: 83 LMMANHTSISSLFERTC--RQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLID 140
++N+T+I LF C Q+ + +AFL + + M F E++++ + L+
Sbjct: 258 TFISNNTAIQELFRFRCILEQFTAKFRCKAFLSWYSGKGMHDVEFAEVESN---MNNLVS 314
Query: 141 EY 142
EY
Sbjct: 315 EY 316
>gi|169179398 PREDICTED: similar to hCG1784562 [Homo sapiens]
Length = 316
Score = 36.6 bits (83), Expect = 0.009
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 23 CYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSG 82
CY+ I+ G + +V + I+ + + F W P +++ A P ++S
Sbjct: 201 CYLMAAPIVGGCMSMREVDEQTYNIQNKYSSYFAHWIPHNVERA---ACDIPPLELKMSV 257
Query: 83 LMMANHTSISSLFERTC--RQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLID 140
++N+T+I LF C Q+ + +AFL + + M F E++++ + L+
Sbjct: 258 TFISNNTAIQELFRFRCILEQFTAKFRCKAFLSWYSGKGMHDVEFAEVESN---MNNLVS 314
Query: 141 EY 142
EY
Sbjct: 315 EY 316
>gi|169181282 PREDICTED: similar to hCG1784562 [Homo sapiens]
Length = 316
Score = 36.6 bits (83), Expect = 0.009
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 23 CYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSG 82
CY+ I+ G + +V + I+ + + F W P +++ A P ++S
Sbjct: 201 CYLMAAPIVGGCMSMREVDEQTYNIQNKYSSYFAHWIPHNVERA---ACDIPPLELKMSV 257
Query: 83 LMMANHTSISSLFERTC--RQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLID 140
++N+T+I LF C Q+ + +AFL + + M F E++++ + L+
Sbjct: 258 TFISNNTAIQELFRFRCILEQFTAKFRCKAFLSWYSGKGMHDVEFAEVESN---MNNLVS 314
Query: 141 EY 142
EY
Sbjct: 315 EY 316
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 30.8 bits (68), Expect = 0.50
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 22/118 (18%)
Query: 1 MRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGP 60
+++LL+ KNV +STGR + + I G +D S E+KL P
Sbjct: 4463 LQKLLRAKNVQLSTGRGSE------GLRAEINGHID------SKLAGLEQKLQG----TP 4506
Query: 61 ASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKE 118
++ + A +RK P P RV A+ +SS + R+ D +R EA L+Q ++E
Sbjct: 4507 SNKEDAAARK-PLTPKPKRV---QKASDRLVSS--RKKLRKEDGVRASEALLKQLKQE 4558
>gi|67782356 corneodesmosin precursor [Homo sapiens]
Length = 529
Score = 30.4 bits (67), Expect = 0.66
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 49 ERKLANFIPWGPASIQVALSRKSPYLPSAHRVSG 82
+R ++ IP P S +S PY+PS+H VSG
Sbjct: 215 QRPCSSDIPDSPCSGGPIVSHSGPYIPSSHSVSG 248
>gi|41281808 harmonin isoform b3 [Homo sapiens]
Length = 899
Score = 28.1 bits (61), Expect = 3.3
Identities = 12/63 (19%), Positives = 36/63 (57%)
Query: 96 ERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGT 155
+R + +K+ + + +E+ R++++ + +E + R+ ++Q+++E + WG+
Sbjct: 321 KRLAMESNKILQEQQEMERQRRKEIAQKAAEENERYRKEMEQIVEEEEKFKKQWEEDWGS 380
Query: 156 QEQ 158
+EQ
Sbjct: 381 KEQ 383
>gi|71480164 harmonin isoform a [Homo sapiens]
Length = 552
Score = 28.1 bits (61), Expect = 3.3
Identities = 12/63 (19%), Positives = 36/63 (57%)
Query: 96 ERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGT 155
+R + +K+ + + +E+ R++++ + +E + R+ ++Q+++E + WG+
Sbjct: 321 KRLAMESNKILQEQQEMERQRRKEIAQKAAEENERYRKEMEQIVEEEEKFKKQWEEDWGS 380
Query: 156 QEQ 158
+EQ
Sbjct: 381 KEQ 383
>gi|11276085 UDP glycosyltransferase 1 family, polypeptide A9
precursor [Homo sapiens]
Length = 530
Score = 28.1 bits (61), Expect = 3.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 80 VSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFD 126
+ L+M ++ I LF CR K +K +L++ + +F D FD
Sbjct: 105 IYSLLMGSYNDIFDLFFSNCRSLFKDKKLVEYLKESSFDAVFLDPFD 151
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,463,957
Number of Sequences: 37866
Number of extensions: 205710
Number of successful extensions: 668
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 45
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.