Guide to the Human Genome
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Name: TUBG1 Sequence: fasta or formatted (451aa) NCBI GI: 31543831
Description:

tubulin, gamma 1

Referenced in:

Tubulins and Microtubules

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         24           2
 C cysteine            1.3          6           1
 D aspartate           6.2         28           2
 E glutamate           6.0         27           2
 F phenylalanine       3.8         17           2
 G glycine             6.0         27           3
 H histidine           2.9         13           1
 I isoleucine          7.1         32           2
 K lysine              3.5         16           2
 L leucine             9.8         44           2
 M methionine          2.4         11           2
 N asparagine          4.9         22           2
 P proline             4.7         21           1
 Q glutamine           5.8         26           2
 R arginine            6.4         29           2
 S serine              7.5         34           2
 T threonine           6.2         28           3
 V valine              5.5         25           3
 W tryptophan          0.9          4           1
 Y tyrosine            3.8         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tubulin, gamma 1 
TUBG2                 0.982   tubulin, gamma 2 
LOC100133673          0.336   PREDICTED: similar to tubulin, gamma 1 
TUBB2C                0.303   tubulin, beta, 2 
TUBB2B                0.301   tubulin, beta 2B 
TUBB                  0.301   tubulin, beta 
TUBB8                 0.301   tubulin, beta 8 
TUBB2A                0.301   tubulin, beta 2 
TUBB3                 0.299   tubulin, beta, 4 
TUBB4                 0.299   tubulin, beta 4 
TUBB6                 0.298   tubulin, beta 6 
TUBB1                 0.293   beta tubulin 1, class VI 
TUBB4Q                0.268   tubulin, beta polypeptide 4, member Q 
TUBA4A                0.241   tubulin, alpha 4a 
TUBA1C                0.238   tubulin alpha 6 
TUBA1B                0.237   tubulin, alpha, ubiquitous 
TUBA1A                0.236   tubulin, alpha 1a 
TUBA3D                0.235   tubulin, alpha 3d 
TUBA3C                0.235   tubulin, alpha 3c 
TUBA3E                0.232   tubulin, alpha 3e 
TUBA8                 0.228   tubulin, alpha 8 
TUBAL3                0.225   tubulin, alpha-like 3 
TUBE1                 0.165   tubulin, epsilon 1 
TUBD1                 0.147   delta-tubulin 
LOC100130736          0.095   PREDICTED: similar to tubulin, beta 5 
LOC100130736          0.095   PREDICTED: similar to tubulin, beta 5 
LOC100130736          0.016   PREDICTED: similar to hCG1647990 
LOC442434             0.014   PREDICTED: similar to hCG1784562 
LOC442434             0.014   PREDICTED: similar to hCG1784562 
LOC442434             0.014   PREDICTED: similar to hCG1784562 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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