Guide to the Human Genome
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Name: TUBA3D Sequence: fasta or formatted (450aa) NCBI GI: 156564363
Description:

tubulin, alpha 3d

Referenced in:

Tubulins and Microtubules

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         40           2
 C cysteine            2.7         12           2
 D aspartate           6.0         27           2
 E glutamate           8.0         36           2
 F phenylalanine       4.4         20           2
 G glycine             7.8         35           3
 H histidine           2.9         13           1
 I isoleucine          5.8         26           1
 K lysine              4.2         19           2
 L leucine             7.3         33           2
 M methionine          2.2         10           1
 N asparagine          3.6         16           2
 P proline             4.4         20           2
 Q glutamine           3.3         15           1
 R arginine            4.7         21           2
 S serine              4.4         20           2
 T threonine           6.4         29           2
 V valine              7.8         35           2
 W tryptophan          0.9          4           1
 Y tyrosine            4.2         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tubulin, alpha 3d 
TUBA3C                1.000   tubulin, alpha 3c 
TUBA3E                0.984   tubulin, alpha 3e 
TUBA1A                0.982   tubulin, alpha 1a 
TUBA1B                0.978   tubulin, alpha, ubiquitous 
TUBA1C                0.972   tubulin alpha 6 
TUBA4A                0.952   tubulin, alpha 4a 
TUBA8                 0.910   tubulin, alpha 8 
TUBAL3                0.753   tubulin, alpha-like 3 
TUBB                  0.392   tubulin, beta 
TUBB2C                0.388   tubulin, beta, 2 
TUBB4                 0.387   tubulin, beta 4 
TUBB6                 0.386   tubulin, beta 6 
TUBB2A                0.386   tubulin, beta 2 
TUBB2B                0.385   tubulin, beta 2B 
TUBB3                 0.384   tubulin, beta, 4 
TUBB8                 0.379   tubulin, beta 8 
TUBB1                 0.363   beta tubulin 1, class VI 
TUBB4Q                0.326   tubulin, beta polypeptide 4, member Q 
TUBG1                 0.232   tubulin, gamma 1 
TUBG2                 0.230   tubulin, gamma 2 
TUBE1                 0.229   tubulin, epsilon 1 
LOC100130736          0.117   PREDICTED: similar to tubulin, beta 5 
LOC100130736          0.117   PREDICTED: similar to tubulin, beta 5 
TUBD1                 0.098   delta-tubulin 
LOC442434             0.048   PREDICTED: similar to hCG1784562 
LOC442434             0.048   PREDICTED: similar to hCG1784562 
LOC442434             0.048   PREDICTED: similar to hCG1784562 
LOC100130736          0.046   PREDICTED: similar to hCG1647990 
LOC100133673          0.023   PREDICTED: similar to tubulin, gamma 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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