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Search of human proteins with 169217962
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169217962 PREDICTED: similar to phosphodiesterase 4D
interacting protein [Homo sapiens]
(424 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169217962 PREDICTED: similar to phosphodiesterase 4D interact... 830 0.0
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ... 825 0.0
gi|239752894 PREDICTED: Neuroblastoma breakpoint family member 6... 56 5e-08
gi|239747446 PREDICTED: similar to Neuroblastoma breakpoint fami... 56 5e-08
gi|239741304 PREDICTED: similar to Neuroblastoma breakpoint fami... 56 5e-08
gi|239741281 PREDICTED: Neuroblastoma breakpoint family member 6... 56 5e-08
gi|221136848 neuroblastoma breakpoint family, member 6 isoform 2... 48 2e-05
gi|221136844 neuroblastoma breakpoint family, member 6 isoform 1... 48 2e-05
gi|221218991 neuroblastoma breakpoint family, member 4 [Homo sap... 48 2e-05
gi|42794779 myosin 18A isoform b [Homo sapiens] 46 6e-05
gi|28416946 myosin 18A isoform a [Homo sapiens] 46 6e-05
gi|154277118 spectrin repeat containing, nuclear envelope 1 isof... 46 7e-05
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 46 7e-05
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 46 7e-05
gi|36031016 CTCL tumor antigen L14-2 [Homo sapiens] 45 1e-04
gi|92110019 hypothetical protein LOC55672 [Homo sapiens] 45 1e-04
gi|28269672 serologically defined colon cancer antigen 8 [Homo s... 45 2e-04
gi|157042792 coiled-coil domain containing 64B [Homo sapiens] 44 2e-04
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 43 5e-04
gi|34577114 cytomatrix protein p110 [Homo sapiens] 43 5e-04
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 42 0.001
gi|205277396 dynactin 1 isoform 4 [Homo sapiens] 41 0.002
gi|205277392 dynactin 1 isoform 3 [Homo sapiens] 41 0.002
gi|13259508 dynactin 1 isoform 2 [Homo sapiens] 41 0.002
gi|13259510 dynactin 1 isoform 1 [Homo sapiens] 41 0.002
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 41 0.002
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 41 0.002
gi|224589132 hypothetical protein LOC100132406 [Homo sapiens] 40 0.004
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 40 0.004
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 40 0.004
>gi|169217962 PREDICTED: similar to phosphodiesterase 4D interacting
protein [Homo sapiens]
Length = 424
Score = 830 bits (2144), Expect = 0.0
Identities = 424/424 (100%), Positives = 424/424 (100%)
Query: 1 MLSLCLENAELKEQMGETMSDGWEIEEDKEKGEVMVETVVTKEGLSESSLQAEFRKLQGK 60
MLSLCLENAELKEQMGETMSDGWEIEEDKEKGEVMVETVVTKEGLSESSLQAEFRKLQGK
Sbjct: 1 MLSLCLENAELKEQMGETMSDGWEIEEDKEKGEVMVETVVTKEGLSESSLQAEFRKLQGK 60
Query: 61 LKNAHNIINLLKEQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQHQEEGNV 120
LKNAHNIINLLKEQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQHQEEGNV
Sbjct: 61 LKNAHNIINLLKEQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQHQEEGNV 120
Query: 121 TVRPFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQ 180
TVRPFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQ
Sbjct: 121 TVRPFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQ 180
Query: 181 DLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAE 240
DLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAE
Sbjct: 181 DLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAE 240
Query: 241 REETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGKQEEFRVYGKS 300
REETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGKQEEFRVYGKS
Sbjct: 241 REETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGKQEEFRVYGKS 300
Query: 301 ENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSVTSDYSSSLERPRKLRAVGTLEGSS 360
ENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSVTSDYSSSLERPRKLRAVGTLEGSS
Sbjct: 301 ENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSVTSDYSSSLERPRKLRAVGTLEGSS 360
Query: 361 PHSVPDEDEGWLSDGTGAFYSPGLQAKKDLESLIQRVSQLEAQLPKNGLEEKLAEELRSA 420
PHSVPDEDEGWLSDGTGAFYSPGLQAKKDLESLIQRVSQLEAQLPKNGLEEKLAEELRSA
Sbjct: 361 PHSVPDEDEGWLSDGTGAFYSPGLQAKKDLESLIQRVSQLEAQLPKNGLEEKLAEELRSA 420
Query: 421 SWPG 424
SWPG
Sbjct: 421 SWPG 424
>gi|157311604 phosphodiesterase 4D interacting protein isoform 1 [Homo
sapiens]
Length = 2346
Score = 825 bits (2131), Expect = 0.0
Identities = 422/424 (99%), Positives = 422/424 (99%)
Query: 1 MLSLCLENAELKEQMGETMSDGWEIEEDKEKGEVMVETVVTKEGLSESSLQAEFRKLQGK 60
MLSLCLENAELKEQMGE MSDGWEIEEDKEKGEVMVETVVTKEGLSESSLQAEFRKLQGK
Sbjct: 1049 MLSLCLENAELKEQMGEAMSDGWEIEEDKEKGEVMVETVVTKEGLSESSLQAEFRKLQGK 1108
Query: 61 LKNAHNIINLLKEQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQHQEEGNV 120
LKNAHNIINLLKEQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQHQEEGNV
Sbjct: 1109 LKNAHNIINLLKEQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQHQEEGNV 1168
Query: 121 TVRPFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQ 180
TVRPFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQ
Sbjct: 1169 TVRPFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQ 1228
Query: 181 DLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAE 240
DLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAE
Sbjct: 1229 DLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAE 1288
Query: 241 REETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGKQEEFRVYGKS 300
REETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGKQEEFRVYGKS
Sbjct: 1289 REETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGKQEEFRVYGKS 1348
Query: 301 ENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSVTSDYSSSLERPRKLRAVGTLEGSS 360
ENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSVTSDYSSSLERP KLRAVGTLEGSS
Sbjct: 1349 ENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSVTSDYSSSLERPWKLRAVGTLEGSS 1408
Query: 361 PHSVPDEDEGWLSDGTGAFYSPGLQAKKDLESLIQRVSQLEAQLPKNGLEEKLAEELRSA 420
PHSVPDEDEGWLSDGTGAFYSPGLQAKKDLESLIQRVSQLEAQLPKNGLEEKLAEELRSA
Sbjct: 1409 PHSVPDEDEGWLSDGTGAFYSPGLQAKKDLESLIQRVSQLEAQLPKNGLEEKLAEELRSA 1468
Query: 421 SWPG 424
SWPG
Sbjct: 1469 SWPG 1472
>gi|239752894 PREDICTED: Neuroblastoma breakpoint family member
6-like protein [Homo sapiens]
Length = 298
Score = 56.2 bits (134), Expect = 5e-08
Identities = 24/51 (47%), Positives = 37/51 (72%)
Query: 154 GPQSAFSLPGSTQHLRSQLSQCKQRYQDLQEKLLLSEATVFAQANELEKYR 204
GP++ S+ + Q+LRS+L +CKQ +QDL EK L S+AT ++ N L+KY+
Sbjct: 10 GPRAEISILETNQYLRSELEKCKQNFQDLTEKFLTSKATAYSLTNHLQKYK 60
>gi|239747446 PREDICTED: similar to Neuroblastoma breakpoint family
member 6-like protein [Homo sapiens]
Length = 298
Score = 56.2 bits (134), Expect = 5e-08
Identities = 24/51 (47%), Positives = 37/51 (72%)
Query: 154 GPQSAFSLPGSTQHLRSQLSQCKQRYQDLQEKLLLSEATVFAQANELEKYR 204
GP++ S+ + Q+LRS+L +CKQ +QDL EK L S+AT ++ N L+KY+
Sbjct: 10 GPRAEMSILETNQYLRSELEKCKQNFQDLTEKFLTSKATAYSLTNHLQKYK 60
>gi|239741304 PREDICTED: similar to Neuroblastoma breakpoint family
member 6-like protein [Homo sapiens]
Length = 298
Score = 56.2 bits (134), Expect = 5e-08
Identities = 24/51 (47%), Positives = 37/51 (72%)
Query: 154 GPQSAFSLPGSTQHLRSQLSQCKQRYQDLQEKLLLSEATVFAQANELEKYR 204
GP++ S+ + Q+LRS+L +CKQ +QDL EK L S+AT ++ N L+KY+
Sbjct: 10 GPRAEISILETNQYLRSELEKCKQNFQDLTEKFLTSKATAYSLTNHLQKYK 60
>gi|239741281 PREDICTED: Neuroblastoma breakpoint family member
6-like protein [Homo sapiens]
Length = 322
Score = 56.2 bits (134), Expect = 5e-08
Identities = 24/51 (47%), Positives = 37/51 (72%)
Query: 154 GPQSAFSLPGSTQHLRSQLSQCKQRYQDLQEKLLLSEATVFAQANELEKYR 204
GP++ S+ + Q+LRS+L +CKQ +QDL EK L S+AT ++ N L+KY+
Sbjct: 10 GPRAEISILETNQYLRSELEKCKQNFQDLTEKFLTSKATAYSLTNHLQKYK 60
>gi|221136848 neuroblastoma breakpoint family, member 6 isoform 2
[Homo sapiens]
Length = 638
Score = 47.8 bits (112), Expect = 2e-05
Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 29/205 (14%)
Query: 166 QHLRSQLSQCKQRYQDLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQ 225
Q LRSQL++ Q+++DL+EK L+++AT ++ AN+L+KY+ ++ I L+
Sbjct: 22 QELRSQLAESNQQFRDLKEKFLITQATAYSLANQLKKYK--------CEEYKDIIDSVLR 73
Query: 226 DLGYETCGRSENEAEREETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLE 285
D +E + EE + H+ KE+ + E+ R G AS K L+
Sbjct: 74 DELQSMEKLAEKLRQAEELRQYKALVHSQAKELTQLR----EKLREGRD-ASRWLNKHLK 128
Query: 286 NQLGKQEEFRVYGKSENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSVTSDYSSSLE 345
L + + G +DL+ QL +++ ++L V LS +D +
Sbjct: 129 TLLTPDDPDKSQG------------QDLREQLAEGHRLAEHL---VHKLSPENDEDEDED 173
Query: 346 RPRKLRAVGTL-EGSSPHSVPDEDE 369
K V + E +P V +E
Sbjct: 174 EDDKDEEVEKVQESPAPREVQKTEE 198
>gi|221136844 neuroblastoma breakpoint family, member 6 isoform 1
[Homo sapiens]
Length = 667
Score = 47.8 bits (112), Expect = 2e-05
Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 29/205 (14%)
Query: 166 QHLRSQLSQCKQRYQDLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQ 225
Q LRSQL++ Q+++DL+EK L+++AT ++ AN+L+KY+ ++ I L+
Sbjct: 22 QELRSQLAESNQQFRDLKEKFLITQATAYSLANQLKKYK--------CEEYKDIIDSVLR 73
Query: 226 DLGYETCGRSENEAEREETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLE 285
D +E + EE + H+ KE+ + E+ R G AS K L+
Sbjct: 74 DELQSMEKLAEKLRQAEELRQYKALVHSQAKELTQLR----EKLREGRD-ASRWLNKHLK 128
Query: 286 NQLGKQEEFRVYGKSENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSVTSDYSSSLE 345
L + + G +DL+ QL +++ ++L V LS +D +
Sbjct: 129 TLLTPDDPDKSQG------------QDLREQLAEGHRLAEHL---VHKLSPENDEDEDED 173
Query: 346 RPRKLRAVGTL-EGSSPHSVPDEDE 369
K V + E +P V +E
Sbjct: 174 EDDKDEEVEKVQESPAPREVQKTEE 198
>gi|221218991 neuroblastoma breakpoint family, member 4 [Homo
sapiens]
Length = 638
Score = 47.8 bits (112), Expect = 2e-05
Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 29/205 (14%)
Query: 166 QHLRSQLSQCKQRYQDLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQ 225
Q LRSQL++ Q+++DL+EK L+++AT ++ AN+L+KY+ ++ I L+
Sbjct: 22 QELRSQLAESNQQFRDLKEKFLITQATAYSLANQLKKYK--------CEEYKDIIDSVLR 73
Query: 226 DLGYETCGRSENEAEREETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLE 285
D +E + EE + H+ KE+ + E+ R G AS K L+
Sbjct: 74 DELQSMEKLAEKLRQAEELRQYKALVHSQAKELTQLR----EKLREGRD-ASRWLNKHLK 128
Query: 286 NQLGKQEEFRVYGKSENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSVTSDYSSSLE 345
L + + G +DL+ QL +++ ++L V LS +D +
Sbjct: 129 TLLTPDDPDKSQG------------QDLREQLAEGHRLAEHL---VHKLSPENDEDEDED 173
Query: 346 RPRKLRAVGTL-EGSSPHSVPDEDE 369
K V + E +P V +E
Sbjct: 174 EDDKDEEVEKVQESPAPREVQKTEE 198
>gi|42794779 myosin 18A isoform b [Homo sapiens]
Length = 2039
Score = 46.2 bits (108), Expect = 6e-05
Identities = 87/416 (20%), Positives = 163/416 (39%), Gaps = 48/416 (11%)
Query: 24 EIEEDKEKGE--VMVETVVTKEGLSESSLQAEFR-KLQGKLKNAHNIINLL--------- 71
E+++D GE + E V + ++ LQ EF KL+ + +N + L
Sbjct: 1361 EVDDDDAGGEWRLKYERAVREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADSEE 1420
Query: 72 KEQLVLSSKEGNSKLTPELL---VHLTSTIERINTELVGSPGK--------HQHQEEGNV 120
++ + K+ +LT EL +HL R N EL + H+ + +
Sbjct: 1421 SQRALQQLKKKCQRLTAELQDTKLHLEGQQVR-NHELEKKQRRFDSELSQAHEEAQREKL 1479
Query: 121 TVRPFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQ 180
R + + L F++ QL+ + Q SL Q + SQ S+ +
Sbjct: 1480 QREKLQREKDMLLAEAFSLK-QQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLA 1538
Query: 181 DLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAE 240
++++L EA V Q EL++ + +++Q +++++++ + E+ E
Sbjct: 1539 KVKKQLRDLEAKVKDQEEELDEQAGTI---QMLEQAKLRLEMEMERMRQTHSKEMESRDE 1595
Query: 241 REETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGKQEEFRVYGKS 300
E C++ E+ L E +Q E++ LE +L +
Sbjct: 1596 EVEEARQSCQKKLKQMEVQLEEEYEDKQ-------KVLREKRELEGKLATLSDQVNRRDF 1648
Query: 301 ENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSVTSDYSSSLERPRKLRAVGTLEGSS 360
E+ LRKD+K KA L +A ++ +LK+ S + + LE + ++
Sbjct: 1649 ESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEE-SEFTCAAAVKARK 1707
Query: 361 PHSVPDEDEGWLSDGTGAFYSPGLQAKKDLESLIQRVSQLEAQLPKNGLEEKLAEE 416
V ED D +AK LE + R+ Q KN ++ +L E+
Sbjct: 1708 AMEVEIEDLHLQIDDIA-------KAKTALEEQLSRL-----QREKNEIQNRLEED 1751
Score = 33.1 bits (74), Expect = 0.49
Identities = 70/343 (20%), Positives = 136/343 (39%), Gaps = 45/343 (13%)
Query: 4 LCLENAELKEQMGETMSDGWEIEEDKEKGEVMVETVVTKEGLSESSL---QAEFRKLQGK 60
L E LK+Q+ E D + E ++ + ++E E+SL + + R L+ K
Sbjct: 1491 LLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEAK 1550
Query: 61 LKNAHNIINLLKEQLVLSSKEGNSKLTPELLVHLTSTIERIN-TELVGSPGKHQHQEEGN 119
+K+ ++ L + G ++ + + L +ER+ T + + EE
Sbjct: 1551 VKD---------QEEELDEQAGTIQMLEQAKLRLEMEMERMRQTHSKEMESRDEEVEEAR 1601
Query: 120 VTVRPFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRY 179
+ + + + L + D Q R+ S Q R K+
Sbjct: 1602 QSCQKKLKQMEVQLEEEYE------DKQKVLREKRELEGKLATLSDQVNRRDFESEKRLR 1655
Query: 180 QDLQE-KLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENE 238
+DL+ K LL++A + L + K++ Q++ L++ + TC +
Sbjct: 1656 KDLKRTKALLADAQLMLDH---------LKNSAPSKREIAQLKNQLEESEF-TCAAAVKA 1705
Query: 239 AEREETTSPECEE-HNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGK-QEEFRV 296
+ E E E+ H + ++ + EQ R E+ ++N+L + QE+
Sbjct: 1706 RKAMEV---EIEDLHLQIDDIAKAKTALEEQLSR-----LQREKNEIQNRLEEDQEDMNE 1757
Query: 297 YGKSENILVLRKD-----IKDLKAQLQNANKVIQNLKSRVRSL 334
K V + I DL+AQL+ ANK Q L+ ++++L
Sbjct: 1758 LMKKHKAAVAQASRDLAQINDLQAQLEEANKEKQELQEKLQAL 1800
Score = 28.9 bits (63), Expect = 9.2
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 6/143 (4%)
Query: 10 ELKEQMGETMSDGWEIEEDKEKGEVMVETVVTKEGLSESSLQAEFRKLQGKLKNAHNIIN 69
+ KE+MGE E K + E+ +E++ ++ L+ F+++ G L+ A
Sbjct: 1882 DTKEEMGELARKEAEASRKKHELEMDLESLEAANQSLQADLKLAFKRI-GDLQAAIEDEM 1940
Query: 70 LLKEQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQHQEEGNVTVRPFPRPQ 129
E L + EG+S + E L ++ + + L + G + + P
Sbjct: 1941 ESDENEDLINSEGDSDVDSE----LEDRVDGVKSWLSKNKGPSKAASDDGSLKSSSPTSY 1996
Query: 130 SLDLGATFTVDAHQ-LDNQSQPR 151
L + D H LDN S+PR
Sbjct: 1997 WKSLAPDRSDDEHDPLDNTSRPR 2019
>gi|28416946 myosin 18A isoform a [Homo sapiens]
Length = 2054
Score = 46.2 bits (108), Expect = 6e-05
Identities = 87/416 (20%), Positives = 163/416 (39%), Gaps = 48/416 (11%)
Query: 24 EIEEDKEKGE--VMVETVVTKEGLSESSLQAEFR-KLQGKLKNAHNIINLL--------- 71
E+++D GE + E V + ++ LQ EF KL+ + +N + L
Sbjct: 1361 EVDDDDAGGEWRLKYERAVREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADSEE 1420
Query: 72 KEQLVLSSKEGNSKLTPELL---VHLTSTIERINTELVGSPGK--------HQHQEEGNV 120
++ + K+ +LT EL +HL R N EL + H+ + +
Sbjct: 1421 SQRALQQLKKKCQRLTAELQDTKLHLEGQQVR-NHELEKKQRRFDSELSQAHEEAQREKL 1479
Query: 121 TVRPFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQ 180
R + + L F++ QL+ + Q SL Q + SQ S+ +
Sbjct: 1480 QREKLQREKDMLLAEAFSLK-QQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLA 1538
Query: 181 DLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAE 240
++++L EA V Q EL++ + +++Q +++++++ + E+ E
Sbjct: 1539 KVKKQLRDLEAKVKDQEEELDEQAGTI---QMLEQAKLRLEMEMERMRQTHSKEMESRDE 1595
Query: 241 REETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGKQEEFRVYGKS 300
E C++ E+ L E +Q E++ LE +L +
Sbjct: 1596 EVEEARQSCQKKLKQMEVQLEEEYEDKQ-------KVLREKRELEGKLATLSDQVNRRDF 1648
Query: 301 ENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSVTSDYSSSLERPRKLRAVGTLEGSS 360
E+ LRKD+K KA L +A ++ +LK+ S + + LE + ++
Sbjct: 1649 ESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEE-SEFTCAAAVKARK 1707
Query: 361 PHSVPDEDEGWLSDGTGAFYSPGLQAKKDLESLIQRVSQLEAQLPKNGLEEKLAEE 416
V ED D +AK LE + R+ Q KN ++ +L E+
Sbjct: 1708 AMEVEIEDLHLQIDDIA-------KAKTALEEQLSRL-----QREKNEIQNRLEED 1751
Score = 33.1 bits (74), Expect = 0.49
Identities = 70/343 (20%), Positives = 136/343 (39%), Gaps = 45/343 (13%)
Query: 4 LCLENAELKEQMGETMSDGWEIEEDKEKGEVMVETVVTKEGLSESSL---QAEFRKLQGK 60
L E LK+Q+ E D + E ++ + ++E E+SL + + R L+ K
Sbjct: 1491 LLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEAK 1550
Query: 61 LKNAHNIINLLKEQLVLSSKEGNSKLTPELLVHLTSTIERIN-TELVGSPGKHQHQEEGN 119
+K+ ++ L + G ++ + + L +ER+ T + + EE
Sbjct: 1551 VKD---------QEEELDEQAGTIQMLEQAKLRLEMEMERMRQTHSKEMESRDEEVEEAR 1601
Query: 120 VTVRPFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRY 179
+ + + + L + D Q R+ S Q R K+
Sbjct: 1602 QSCQKKLKQMEVQLEEEYE------DKQKVLREKRELEGKLATLSDQVNRRDFESEKRLR 1655
Query: 180 QDLQE-KLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENE 238
+DL+ K LL++A + L + K++ Q++ L++ + TC +
Sbjct: 1656 KDLKRTKALLADAQLMLDH---------LKNSAPSKREIAQLKNQLEESEF-TCAAAVKA 1705
Query: 239 AEREETTSPECEE-HNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGK-QEEFRV 296
+ E E E+ H + ++ + EQ R E+ ++N+L + QE+
Sbjct: 1706 RKAMEV---EIEDLHLQIDDIAKAKTALEEQLSR-----LQREKNEIQNRLEEDQEDMNE 1757
Query: 297 YGKSENILVLRKD-----IKDLKAQLQNANKVIQNLKSRVRSL 334
K V + I DL+AQL+ ANK Q L+ ++++L
Sbjct: 1758 LMKKHKAAVAQASRDLAQINDLQAQLEEANKEKQELQEKLQAL 1800
>gi|154277118 spectrin repeat containing, nuclear envelope 1 isoform
4 [Homo sapiens]
Length = 3321
Score = 45.8 bits (107), Expect = 7e-05
Identities = 75/337 (22%), Positives = 141/337 (41%), Gaps = 65/337 (19%)
Query: 11 LKEQMGETMSDGWEIEEDKEKGEVMVETVVTK-------------EGLSESSLQAEFRKL 57
LK + E +E E ++K + ++++ TK G S S AE + L
Sbjct: 471 LKNVISEKQRTLYEALERQQKYQDSLQSISTKMEAIELKLSESPEPGRSPESQMAEHQAL 530
Query: 58 QGKLKNAHNIINLLK----EQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQ 113
++ + IN L+ E+LV S E + L LT ER++T + + GK Q
Sbjct: 531 MDEILMLQDEINELQSSLAEELVSESCEADPAEQLALQSTLTVLAERMSTIRMKASGKRQ 590
Query: 114 HQEEG-NVTVRPFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQL 172
EE N + + Q+L + +A +LD+ +A S P + +QL
Sbjct: 591 LLEEKLNDQLEEQRQEQALQ---RYRCEADELDSWLLSTKATLDTALSPPKEPMDMEAQL 647
Query: 173 SQCKQRYQDLQEKLL-LSEATVFAQANELEKYRVMLTGESLVKQDSKQI----------- 220
C+ ++++K++ LSE +V + ++L G++ K +++Q+
Sbjct: 648 MDCQNMLVEIEQKVVALSELSVHNE-------NLLLEGKAHTKDEAEQLAGKLRRLKGSL 700
Query: 221 ----------QVDLQDLGYETCGRSENEAEREETTSPECEEHNSLKEMVLMEGLCSEQGR 270
Q+++Q E + E++ + T SP +E L + + +
Sbjct: 701 LELQRALHDKQLNMQGTAQE---KEESDVDLTATQSPGVQEW-------LAQARTTWTQQ 750
Query: 271 RGSTLASSSERKPLENQLGKQEEF--RVYGKSENILV 305
R S+L ++K LE +L +Q+ V + E IL+
Sbjct: 751 RQSSL---QQQKELEQELAEQKSLLRSVASRGEEILI 784
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 45.8 bits (107), Expect = 7e-05
Identities = 75/337 (22%), Positives = 141/337 (41%), Gaps = 65/337 (19%)
Query: 11 LKEQMGETMSDGWEIEEDKEKGEVMVETVVTK-------------EGLSESSLQAEFRKL 57
LK + E +E E ++K + ++++ TK G S S AE + L
Sbjct: 5876 LKNVISEKQRTLYEALERQQKYQDSLQSISTKMEAIELKLSESPEPGRSPESQMAEHQAL 5935
Query: 58 QGKLKNAHNIINLLK----EQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQ 113
++ + IN L+ E+LV S E + L LT ER++T + + GK Q
Sbjct: 5936 MDEILMLQDEINELQSSLAEELVSESCEADPAEQLALQSTLTVLAERMSTIRMKASGKRQ 5995
Query: 114 HQEEG-NVTVRPFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQL 172
EE N + + Q+L + +A +LD+ +A S P + +QL
Sbjct: 5996 LLEEKLNDQLEEQRQEQALQ---RYRCEADELDSWLLSTKATLDTALSPPKEPMDMEAQL 6052
Query: 173 SQCKQRYQDLQEKLL-LSEATVFAQANELEKYRVMLTGESLVKQDSKQI----------- 220
C+ ++++K++ LSE +V + ++L G++ K +++Q+
Sbjct: 6053 MDCQNMLVEIEQKVVALSELSVHNE-------NLLLEGKAHTKDEAEQLAGKLRRLKGSL 6105
Query: 221 ----------QVDLQDLGYETCGRSENEAEREETTSPECEEHNSLKEMVLMEGLCSEQGR 270
Q+++Q E + E++ + T SP +E L + + +
Sbjct: 6106 LELQRALHDKQLNMQGTAQE---KEESDVDLTATQSPGVQEW-------LAQARTTWTQQ 6155
Query: 271 RGSTLASSSERKPLENQLGKQEEF--RVYGKSENILV 305
R S+L ++K LE +L +Q+ V + E IL+
Sbjct: 6156 RQSSL---QQQKELEQELAEQKSLLRSVASRGEEILI 6189
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 45.8 bits (107), Expect = 7e-05
Identities = 75/337 (22%), Positives = 141/337 (41%), Gaps = 65/337 (19%)
Query: 11 LKEQMGETMSDGWEIEEDKEKGEVMVETVVTK-------------EGLSESSLQAEFRKL 57
LK + E +E E ++K + ++++ TK G S S AE + L
Sbjct: 5947 LKNVISEKQRTLYEALERQQKYQDSLQSISTKMEAIELKLSESPEPGRSPESQMAEHQAL 6006
Query: 58 QGKLKNAHNIINLLK----EQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQ 113
++ + IN L+ E+LV S E + L LT ER++T + + GK Q
Sbjct: 6007 MDEILMLQDEINELQSSLAEELVSESCEADPAEQLALQSTLTVLAERMSTIRMKASGKRQ 6066
Query: 114 HQEEG-NVTVRPFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQL 172
EE N + + Q+L + +A +LD+ +A S P + +QL
Sbjct: 6067 LLEEKLNDQLEEQRQEQALQ---RYRCEADELDSWLLSTKATLDTALSPPKEPMDMEAQL 6123
Query: 173 SQCKQRYQDLQEKLL-LSEATVFAQANELEKYRVMLTGESLVKQDSKQI----------- 220
C+ ++++K++ LSE +V + ++L G++ K +++Q+
Sbjct: 6124 MDCQNMLVEIEQKVVALSELSVHNE-------NLLLEGKAHTKDEAEQLAGKLRRLKGSL 6176
Query: 221 ----------QVDLQDLGYETCGRSENEAEREETTSPECEEHNSLKEMVLMEGLCSEQGR 270
Q+++Q E + E++ + T SP +E L + + +
Sbjct: 6177 LELQRALHDKQLNMQGTAQE---KEESDVDLTATQSPGVQEW-------LAQARTTWTQQ 6226
Query: 271 RGSTLASSSERKPLENQLGKQEEF--RVYGKSENILV 305
R S+L ++K LE +L +Q+ V + E IL+
Sbjct: 6227 RQSSL---QQQKELEQELAEQKSLLRSVASRGEEILI 6260
>gi|36031016 CTCL tumor antigen L14-2 [Homo sapiens]
Length = 898
Score = 45.1 bits (105), Expect = 1e-04
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 17/192 (8%)
Query: 168 LRSQLSQCKQRYQDLQEKLLLSEATVFAQANELEKYRVMLTGESLVK--QDSKQIQVDLQ 225
L++++ K+ L+E T QA E E ++ + ++K Q+S++I+ +
Sbjct: 399 LKAEMDSHKETKDKLKET-----TTKLTQAKE-EADQIRKNCQDMIKTYQESEEIKSNEL 452
Query: 226 DLGYETCGRSENEAEREETTSPECEEHNSLKEM-----VLMEGLCSEQGRRGSTLASSSE 280
D + E E + +E + H +KE+ EG+ + R E
Sbjct: 453 DAKLRVT-KGELEKQMQEKSDQLEMHHAKIKELEDLKRTFKEGMDELRTLRTKVKCLEDE 511
Query: 281 RKPLENQLGKQEEF--RVYGKSENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSL-SVT 337
R E++L K +E R + +N+L K L+ QLQ + I+NLK V SL S+
Sbjct: 512 RLRTEDELSKYKEIINRQKAEIQNLLDKVKTADQLQEQLQRGKQEIENLKEEVESLNSLI 571
Query: 338 SDYSSSLERPRK 349
+D +E RK
Sbjct: 572 NDLQKDIEGSRK 583
Score = 34.3 bits (77), Expect = 0.22
Identities = 76/350 (21%), Positives = 147/350 (42%), Gaps = 52/350 (14%)
Query: 5 CLENAELKEQMGETMSDGWEIEEDKEKGEV--MVETVVTKEGLSESSLQA--EFRKLQGK 60
CLE+ L+ + + +S EI +++K E+ +++ V T + L E + E L+ +
Sbjct: 507 CLEDERLRTE--DELSKYKEII-NRQKAEIQNLLDKVKTADQLQEQLQRGKQEIENLKEE 563
Query: 61 LKNAHNIINLLKEQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQHQEEGNV 120
+++ +++IN L++ + EG+ K ELL+ T + N +L Q E N
Sbjct: 564 VESLNSLINDLQKDI-----EGSRKRESELLL-FTERLTSKNAQL---------QSESNS 608
Query: 121 TVRPFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQ 180
F + + QL +Q + + S + LR K+ Q
Sbjct: 609 LQSQFDK---------VSCSESQLQSQCEQMKQTNINLESRLLKEEELR------KEEVQ 653
Query: 181 DLQEKLLLSEATVFAQANELEKYRVMLTGE-----SLVKQDSKQIQVDLQDLGYETCGRS 235
LQ +L + V A + ++E+ + L + S +K +KQ+Q + L G
Sbjct: 654 TLQAELACRQTEVKALSTQVEELKDELVTQRRKHASSIKDLTKQLQQARRKLDQVESGSY 713
Query: 236 ENEAEREETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSS----ERKPLENQLGKQ 291
+ E + S SL E E GS++A + ++ L ++ +
Sbjct: 714 DKEVSSMGSRS---SSSGSLNARSSAEDRSPEN--TGSSVAVDNFPQVDKAMLIERIVRL 768
Query: 292 EEFRVYGKSENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSVTSDYS 341
++ K+E I + IK L +++ K+IQ+ R S +++S+ S
Sbjct: 769 QKAHAR-KNEKIEFMEDHIKQLVEEIRKKTKIIQSYILREESGTLSSEAS 817
Score = 34.3 bits (77), Expect = 0.22
Identities = 57/266 (21%), Positives = 113/266 (42%), Gaps = 31/266 (11%)
Query: 164 STQHLRSQLSQCKQRYQDLQEKL-----LLSEATVFAQANELEKYRVMLTGESLVKQDSK 218
+ L+ QL + KQ ++L+E++ L+++ + + + ++L E L +++
Sbjct: 542 TADQLQEQLQRGKQEIENLKEEVESLNSLINDLQKDIEGSRKRESELLLFTERLTSKNA- 600
Query: 219 QIQVDLQDLGYE----TCGRSENEAEREETTSPECE-EHNSLKEMVLMEGLCSEQGRRGS 273
Q+Q + L + +C S+ +++ E+ E LKE L + Q +
Sbjct: 601 QLQSESNSLQSQFDKVSCSESQLQSQCEQMKQTNINLESRLLKEEELRKE--EVQTLQAE 658
Query: 274 TLASSSERKPLENQLGKQEEFRVYGKSENILVLRKDIKDLKAQLQNANKVIQNLKSRVRS 333
+E K L Q+ + ++ V + ++ IKDL QLQ A + + ++S
Sbjct: 659 LACRQTEVKALSTQVEELKDELVTQRRKHA----SSIKDLTKQLQQARRKLDQVESGSYD 714
Query: 334 LSVTSDYSSSLERPRKLRAVGTLEGSSPHSVPDEDEGWLSDGTGAFYSPGLQAKKDLESL 393
V+S S S L A + E SP + TG+ + + D L
Sbjct: 715 KEVSSMGSRS-SSSGSLNARSSAEDRSP------------ENTGSSVAVDNFPQVDKAML 761
Query: 394 IQRVSQLE-AQLPKNGLEEKLAEELR 418
I+R+ +L+ A KN E + + ++
Sbjct: 762 IERIVRLQKAHARKNEKIEFMEDHIK 787
Score = 32.3 bits (72), Expect = 0.84
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 31/151 (20%)
Query: 210 ESLVKQDSKQIQVDLQDLGYETCGRSEN-EAEREETTSPECEEHNSLKEMVL-MEGLCSE 267
+ L+K++ K Q+L + C +N E ++ T E + N++K++ +E L E
Sbjct: 210 KKLIKENKKH-----QELFVDICSEKDNLREELKKRTETEKQHMNTIKQLESRIEELNKE 264
Query: 268 -QGRRGSTLASSSERKPLENQLGKQ------------EEFR----------VYGKSENIL 304
+ R +A K QL K+ EE R V G+ E+ L
Sbjct: 265 VKASRDQLIAQDVTAKNAVQQLHKEMAQRMEQANKKCEEARQEKEAMVMKYVRGEKES-L 323
Query: 305 VLRKDIKDLKAQLQNANKVIQNLKSRVRSLS 335
LRK+ + L+ +L++ANK ++ ++++ LS
Sbjct: 324 DLRKEKETLEKKLRDANKELEKNTNKIKQLS 354
>gi|92110019 hypothetical protein LOC55672 [Homo sapiens]
Length = 1214
Score = 45.1 bits (105), Expect = 1e-04
Identities = 78/366 (21%), Positives = 151/366 (41%), Gaps = 51/366 (13%)
Query: 7 ENAELKEQMGETMSDGWEIEEDKEKGEVMVETVVTKEGLSESSLQAEFRKLQGKLKNAHN 66
E L + + + +S E +ED+++ +V VE E + ESS E +K + +
Sbjct: 150 EGCRLAQHLVQKLSP--ENDEDEDE-DVQVEEA---EKVLESSAPREVQKAEESKVPEDS 203
Query: 67 IINLLKEQLVLSSKEGNSKLT---PELLVHLTSTIERINTELVGSPGKHQHQEEGNVTVR 123
+ E+ ++ + P +++T +++N+ LV + + V +
Sbjct: 204 L-----EECAITCSNSHGPCDSNQPHKNINITFEEDKVNSTLVVDRESSHDECQDAVNIL 258
Query: 124 PFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQDLQ 183
P P P S + V A L ++ ++ ++ + LR QL++ KQ++++L+
Sbjct: 259 PVPGPTSSATNVSMVVSAGPLSSE--------KAEMNILEMNEKLRPQLAEKKQQFRNLK 310
Query: 184 EKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAEREE 243
EK +++ F AN+ KY+ + + + Q + L +E + EE
Sbjct: 311 EKCFVTQLAGFL-ANQQNKYKYEECEDLIKSMLRNERQFKEEKL-------AEQLKQAEE 362
Query: 244 TTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGKQEEFRVYGKSENI 303
+ H+ +E+ + E+ R G AS S + L+ L E + G
Sbjct: 363 LRQYKVLVHSQERELTQLR----EKLREGRD-ASRSLNQHLQALLTPDEPDKSQG----- 412
Query: 304 LVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSVTSDYSSSLERPRKLRAVGTLEGSSPHS 363
+DL+ QL ++ Q+L V+ LS +D E + A LE S+P
Sbjct: 413 -------QDLQEQLAEGCRLAQHL---VQKLSPENDEDED-EDVQVEEAEKVLESSAPRE 461
Query: 364 VPDEDE 369
V +E
Sbjct: 462 VQKAEE 467
Score = 42.0 bits (97), Expect = 0.001
Identities = 43/201 (21%), Positives = 91/201 (45%), Gaps = 23/201 (11%)
Query: 7 ENAELKEQMGETMSDGWEIEEDKEKGEVMVETVVTKEGLSESSLQAEFRKLQGKLKNAHN 66
E L + + + +S E +ED+++ +V VE E + ESS E +K + +
Sbjct: 421 EGCRLAQHLVQKLSP--ENDEDEDE-DVQVEEA---EKVLESSAPREVQKAEESKVPEDS 474
Query: 67 IINLLKEQLVLSSKEGNSKLT---PELLVHLTSTIERINTELVGSPGKHQHQEEGNVTVR 123
+ E+ ++ + P +++T +++N+ LV + + V +
Sbjct: 475 L-----EECAITCSNSHGPCDSNQPHKNINITFEEDKVNSALVVDRESSHDECQDAVNIL 529
Query: 124 PFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQDLQ 183
P P P S + V A L ++ ++ ++ + LR QL++ KQ++++L+
Sbjct: 530 PVPGPTSSATNVSMVVSAGPLSSE--------KAEMNILEMNEKLRPQLAEKKQQFRNLK 581
Query: 184 EKLLLSEATVFAQANELEKYR 204
EK +++ F AN+ KY+
Sbjct: 582 EKCFVTQLACFL-ANQQNKYK 601
Score = 32.0 bits (71), Expect = 1.1
Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 29/204 (14%)
Query: 166 QHLRSQLSQCKQRYQDLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQ 225
+ LR QL++ KQ++++L+EK +++ F AN +KY+ + + + Q +
Sbjct: 22 EKLRPQLAENKQQFRNLKEKCFVTQLAGFL-ANRQKKYKYEECKDLIKFMLRNERQFKEE 80
Query: 226 DLGYETCGRSENEAEREETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLE 285
L +E + EE + H+ +E+ + E+ R G AS S + L+
Sbjct: 81 KL-------AEQLKQAEELRQYKVLVHSQERELTQLR----EKLREGRD-ASRSLNQHLQ 128
Query: 286 NQLGKQEEFRVYGKSENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSVTSDYSSSLE 345
L E + G +DL+ QL ++ Q+L V+ LS +D E
Sbjct: 129 ALLTPDEPDKSQG------------QDLQEQLAEGCRLAQHL---VQKLSPENDEDED-E 172
Query: 346 RPRKLRAVGTLEGSSPHSVPDEDE 369
+ A LE S+P V +E
Sbjct: 173 DVQVEEAEKVLESSAPREVQKAEE 196
>gi|28269672 serologically defined colon cancer antigen 8 [Homo
sapiens]
Length = 713
Score = 44.7 bits (104), Expect = 2e-04
Identities = 64/295 (21%), Positives = 124/295 (42%), Gaps = 32/295 (10%)
Query: 33 EVMVETVVTKEGLSE-----------SSLQAEFRKLQGKLKNAHNIINLLKEQLVLSSKE 81
E VE V TKE +S +S + + K+ G+++ N N+ K++ +E
Sbjct: 419 EAQVEKV-TKEKISAINQLEEIQSQLASREMDVTKVCGEMRYQLNKTNMEKDEAEKEHRE 477
Query: 82 GNSKLTPELLVHLTSTIERINTELVGSPGKHQHQEEGNVTVRPFPRPQSLDLGATFTVDA 141
+K +L + IE++ EL S +H QE+ + R + L L
Sbjct: 478 FRAKTNRDLEIK-DQEIEKLRIELDESK-QHLEQEQQKAALA---REECLRLTELLGESE 532
Query: 142 HQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQDLQEKLLLSEATVFAQANELE 201
HQL Q +D QS ++ ++Q Q +QR Q+L +K+ EA E E
Sbjct: 533 HQLHLTRQEKDSIQQSF------SKEAKAQALQAQQREQELTQKIQQMEAQ--HDKTENE 584
Query: 202 KYRVMLTGESL----VKQDSKQIQVDLQDLGYETCGRSENEAEREETTSPECEEHNSLKE 257
+Y ++LT ++ +K++ + L+ + +T ++ + T + + E
Sbjct: 585 QY-LLLTSQNTFLTKLKEECCTLAKKLEQISQKTRSEIAQLSQEKRYTYDKLGKLQRRNE 643
Query: 258 MVLMEGLCSEQGRRGSTLASSSERKPLENQLGKQEEFRVYGKSENILVLRKDIKD 312
+E C + GR T+ + +Q Q+ ++ K +L+ R+ + +
Sbjct: 644 E--LEEQCVQHGRVHETMKQRLRQLDKHSQATAQQLVQLLSKQNQLLLERQSLSE 696
Score = 34.7 bits (78), Expect = 0.17
Identities = 62/276 (22%), Positives = 110/276 (39%), Gaps = 40/276 (14%)
Query: 168 LRSQLSQCKQR----YQDLQEKLLLSEATVFAQAN----------ELEKYRVMLTGESLV 213
+RS L+ +QR Y+ +++ L +SE F + ELE+ L E
Sbjct: 322 VRSSLADTQQREASAYEQVKQVLQISEEANFEKTKALIQCDQLRKELERQAERLEKELAS 381
Query: 214 KQDSKQIQVDLQD---------LGYETCGRSEN----EAEREETTSPECEEHNSLKEMVL 260
+Q+ + I+ D+ +G + S+N EA+ E+ T + N L+E +
Sbjct: 382 QQEKRAIEKDMMKKEITKEREYMGSKMLILSQNIAQLEAQVEKVTKEKISAINQLEE--I 439
Query: 261 MEGLCSEQGRRGSTLASSSERKPLENQLGKQEEFRVYGKSENILVLRKDIKDLKAQLQNA 320
L S + + + + QL K + + E+ K +DL+ + Q
Sbjct: 440 QSQLASRE------MDVTKVCGEMRYQLNKTNMEKDEAEKEHREFRAKTNRDLEIKDQEI 493
Query: 321 NKVIQNLKSRVRSLSVTSDYSSSLERPRKLRAVGTLEGSSPHSVP---DEDEGWLSDGTG 377
K+ L + L ++L R LR L G S H + E + +
Sbjct: 494 EKLRIELDESKQHLE-QEQQKAALAREECLRLTELL-GESEHQLHLTRQEKDSIQQSFSK 551
Query: 378 AFYSPGLQAKKDLESLIQRVSQLEAQLPKNGLEEKL 413
+ LQA++ + L Q++ Q+EAQ K E+ L
Sbjct: 552 EAKAQALQAQQREQELTQKIQQMEAQHDKTENEQYL 587
>gi|157042792 coiled-coil domain containing 64B [Homo sapiens]
Length = 508
Score = 44.3 bits (103), Expect = 2e-04
Identities = 59/241 (24%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 164 STQHLRSQLSQCKQRYQDLQEKLLLSEATVFAQANELE----KYRVMLTGESLVKQDSKQ 219
S QHL + + +Q +L+ L A A+A ELE R L + +QDS +
Sbjct: 86 SAQHLERE-ERLQQENHELRRGLAARGAEWEARAVELEGDVEALRAQLGEQRSEQQDSGR 144
Query: 220 IQVD-LQDLGYETCGRSENEAEREETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASS 278
+ L +L + S+ A+ +T E +E+ + G C Q G+ L +
Sbjct: 145 ERARALSELSEQNLRLSQQLAQASQT------EQELQRELDALRGQCQAQALAGAELRTR 198
Query: 279 SERKPLENQL-------------GKQEEF-----RVYGKSENILVLRKDIKDLKAQLQNA 320
E ENQ+ G +EE R+ E +L+LR++ ++ +L+ A
Sbjct: 199 LESLQGENQMLQSRRQDLEAQIRGLREEVEKGEGRLQTTHEELLLLRRERREHSLELERA 258
Query: 321 NKVIQNLKSRVRSLSVTSDYSSSLERPRKLR----AVGTLEGSSPHSVPDEDEGWLSDGT 376
S +R L S LE +L+ + +L+ HS+ D D+G +D
Sbjct: 259 RSEAGEALSALRRL---QRRVSELEEESRLQDADVSAASLQSELAHSLDDGDQGQGADAP 315
Query: 377 G 377
G
Sbjct: 316 G 316
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 43.1 bits (100), Expect = 5e-04
Identities = 70/334 (20%), Positives = 139/334 (41%), Gaps = 55/334 (16%)
Query: 29 KEKGEVM--VETVVTKEGLSESSLQAEFRKLQGKLKNAHNIINLLKEQLVLSSKEGNSKL 86
++K E + ++ +TK+ + L+ +F L + K H +N + V ++ K+
Sbjct: 789 QKKSEALESIKQKLTKQEEEKQILKQDFETLSQETKIQHEELNNRIQTTVTELQK--VKM 846
Query: 87 TPELLVHLTSTIE----RINTELVGSPGKHQHQ-EEGNVTVRPFPRPQSLDLGATFTVDA 141
E L+ ST++ +++ L S + + + ++G + LDL T
Sbjct: 847 EKEALMTELSTVKDKLSKVSDSLKNSKSEFEKENQKGKAAI--------LDLEKTCKELK 898
Query: 142 HQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQDLQEKLLLSEATVFAQANELE 201
HQL Q + + L S + + Q K +QE+L+ ++ T+ + NE E
Sbjct: 899 HQLQVQMENT---LKEQKELKKSLEKEKEASHQLKLELNSMQEQLIQAQNTL--KQNEKE 953
Query: 202 KYRVMLTGESLVK---QDSKQIQVDLQDLGYETCGRSENEAEREETTSPECEEHNSLKEM 258
+ ++ L + Q KQI+ +L ++E E + ++ + +E + KE
Sbjct: 954 EQQLQGNINELKQSSEQKKKQIEALQGELKIAVLQKTELENKLQQQLTQAAQELAAEKEK 1013
Query: 259 VLMEGLCSEQGRRGSTLASSSERKPLENQLGKQEEFRVYGKSENILVLRKDIKDL----- 313
+ S L ++ E+ + KQ + YG+ +L R+D+K +
Sbjct: 1014 I-------------SVLQNNYEKS---QETFKQLQSDFYGRESELLATRQDLKSVEEKLS 1057
Query: 314 ---------KAQLQNANKVIQNLKSRVRSLSVTS 338
+ Q+ N NK+IQ LK+ +L S
Sbjct: 1058 LAQEDLISNRNQIGNQNKLIQELKTAKATLEQDS 1091
Score = 35.0 bits (79), Expect = 0.13
Identities = 55/258 (21%), Positives = 110/258 (42%), Gaps = 30/258 (11%)
Query: 168 LRSQLSQCKQRYQDLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDL 227
L ++LS K + + + L S++ F + N+ K + L E K+ Q+QV +++
Sbjct: 851 LMTELSTVKDKLSKVSDSLKNSKSE-FEKENQKGKAAI-LDLEKTCKELKHQLQVQMENT 908
Query: 228 GYETCGRSENEAEREETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQ 287
E ++ + +E + E NS++E ++ +Q + + + ++
Sbjct: 909 LKEQKELKKSLEKEKEASHQLKLELNSMQEQLIQAQNTLKQNEKEEQQLQGNINELKQSS 968
Query: 288 LGKQEEFRVYGKSENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSV-TSDYSSSLER 346
K+++ I VL+K + K Q Q + Q L + +SV ++Y S E
Sbjct: 969 EQKKKQIEALQGELKIAVLQKTELENKLQ-QQLTQAAQELAAEKEKISVLQNNYEKSQET 1027
Query: 347 PRKLRAVGTLEGSSPHSVPDEDEGWLSDGTGAFYSPGLQAKKDLESLIQRVSQLEAQLPK 406
++L+ SD G S L ++DL+S+ +++S + L
Sbjct: 1028 FKQLQ---------------------SDFYGR-ESELLATRQDLKSVEEKLSLAQEDLIS 1065
Query: 407 N----GLEEKLAEELRSA 420
N G + KL +EL++A
Sbjct: 1066 NRNQIGNQNKLIQELKTA 1083
Score = 31.2 bits (69), Expect = 1.9
Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 41/189 (21%)
Query: 164 STQHLRSQLSQCKQRYQ----------------------------DLQEKLLLSEATVFA 195
+TQ L+ +LS+ + +YQ L KLL +E +
Sbjct: 373 ATQKLKEELSEVETKYQHLKAEFKQLQQQREEKEQHGLQLQSEINQLHSKLLETERQLGE 432
Query: 196 QANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAEREETTSPECEEHNSL 255
L++ R L+ E L+ D +Q DLQ R E + + + T S E +
Sbjct: 433 AHGRLKEQR-QLSSEKLM--DKEQQVADLQ----LKLSRLEEQLKEKVTNSTELQHQLDK 485
Query: 256 KEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGKQE------EFRVYGKSENILVLRKD 309
+ E +Q + ++ + + Q+G ++ E + ENI +L K+
Sbjct: 486 TKQQHQEQQALQQSTTAKLREAQNDLEQVLRQIGDKDQKIQNLEALLQKSKENISLLEKE 545
Query: 310 IKDLKAQLQ 318
+DL A++Q
Sbjct: 546 REDLYAKIQ 554
>gi|34577114 cytomatrix protein p110 [Homo sapiens]
Length = 957
Score = 43.1 bits (100), Expect = 5e-04
Identities = 72/325 (22%), Positives = 138/325 (42%), Gaps = 62/325 (19%)
Query: 143 QLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQDLQEKLLLSEATVFAQANELEK 202
++D Q +L + L +Q S CKQ + L+E L E E++
Sbjct: 435 KIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDA 494
Query: 203 YRVMLTG-ESLVKQDSKQIQV-------------DLQDLGYETCGRSENEAER-----EE 243
R+ L ES + + +KQ+Q D++D+ E R N ++ +E
Sbjct: 495 LRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDM-LEVKERKINVLQKKIENLQE 553
Query: 244 TTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASS----SERKPLENQLGKQEEFRVYGK 299
+ ++ +LK+ V + L ++ + LA+ SE++ + +L +Q E +
Sbjct: 554 QLRDKDKQLTNLKDRV--KSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRER 611
Query: 300 SENILVLRKDIKDLK-------AQLQNANKVIQNLKSRVRSLSVTSDYSSSLERPRKLRA 352
E I RK+ KDLK A+L + +LK SL+ S+ L+R KL++
Sbjct: 612 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLA-----SAGLKRDSKLKS 666
Query: 353 V-----------GTLEG--SSPHSVPDE--------DEGWLSDGTGAFYSPGL-QAKKDL 390
+ LE H++ D+ D+ D ++Y +A+ ++
Sbjct: 667 LEIAIEQKKEECSKLEAQLKKAHNIEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEV 726
Query: 391 ESLIQRVSQLEAQLPKNGLEEKLAE 415
+ L++ + ++E + KN ++K+AE
Sbjct: 727 DRLLEILKEVENE--KNDKDKKIAE 749
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 41.6 bits (96), Expect = 0.001
Identities = 57/271 (21%), Positives = 110/271 (40%), Gaps = 26/271 (9%)
Query: 157 SAFSLPGSTQHLRSQLSQCKQRYQDLQEKLLLSEATVFAQANELEK----YRVMLTGESL 212
+A +L ++ L++ KQ+Y++ Q +L S+ + + EL K Y L
Sbjct: 1438 AAAALDKKQRNFDKILAEWKQKYEESQSELESSQKEARSLSTELFKLKNAYEESLEHLET 1497
Query: 213 VKQDSKQIQVDLQDLGYETCGRSENEAEREETTSPECEEHNSLKEMVLMEGLCSEQGRRG 272
K+++K +Q ++ DL E G S E + E + L E S + G
Sbjct: 1498 FKRENKNLQEEISDL-TEQLGSSGKTIHELEKVRKQLEAEKMELQSALEEAEASLEHEEG 1556
Query: 273 STLASSSE----RKPLENQLGKQEEFRVYGKSENILVLRKDIKDLKAQLQNANKVIQNLK 328
L + E + +E +L +++E K ++ V+ L A+ ++ N+ ++ K
Sbjct: 1557 KILRAQLEFNQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKK 1616
Query: 329 SRVRSLSVTSDYSSSLERPRKLRAVGTLEGSSPHSVPDEDEGWLSDGTGAFYSPGLQAKK 388
L ++ L ++ A + S S+ + + L D ++A
Sbjct: 1617 KMEGDL---NEMEIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDD--------AVRAND 1665
Query: 389 DLESLIQRVSQLEAQLPKNGLEEKLAEELRS 419
DL+ I V + +N L + EELR+
Sbjct: 1666 DLKENIAIVER------RNNLLQAELEELRA 1690
Score = 34.3 bits (77), Expect = 0.22
Identities = 72/294 (24%), Positives = 110/294 (37%), Gaps = 49/294 (16%)
Query: 171 QLSQCKQRYQDLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYE 230
+++ K+ + L+E L SEA + ELE+ V L E Q Q + D E
Sbjct: 848 EMASMKEEFTRLKEALEKSEA----RRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEE 903
Query: 231 TC-----GRSENEAEREETTSPECEEHNSLKEMVL----MEGLCSEQGRRGS----TLAS 277
C + + EA+ +E +E E+ +E CSE R TLA
Sbjct: 904 RCDQLIKNKIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAK 963
Query: 278 SSERKPLENQLGKQEEFRVYGKSENILVLRKDIKDLKAQLQNA--------NKVIQNLKS 329
+ K K + G E I L K+ K L+ Q A +KV K+
Sbjct: 964 VEKEKHATENKVKNLTEEMAGLDEIIAKLTKEKKALQEAHQQALDDLQAEEDKVNTLTKA 1023
Query: 330 RVRSLSVTSDYSSSLERPRKLR-----AVGTLEGS---SPHSVPDEDE------------ 369
+V+ D SLE+ +K+R A LEG + S+ D +
Sbjct: 1024 KVKLEQQVDDLEGSLEQEKKVRMDLERAKRKLEGDLKLTQESIMDLENDKQQLDERLKKK 1083
Query: 370 ----GWLSDGTGAFYSPGLQAKKDLESLIQRVSQLEAQLPKNGLEEKLAEELRS 419
L+ + G Q +K L+ L R+ +LE +L E+LRS
Sbjct: 1084 DFELNALNARIEDEQALGSQLQKKLKELQARIEELEEELEAERTARAKVEKLRS 1137
>gi|205277396 dynactin 1 isoform 4 [Homo sapiens]
Length = 1139
Score = 41.2 bits (95), Expect = 0.002
Identities = 47/243 (19%), Positives = 100/243 (41%), Gaps = 38/243 (15%)
Query: 9 AELKEQMGETMSDGWEIEEDKEKGEVMVETVVTKEGLSESSLQAEFRKLQGKLKNAHNII 68
AE++E+ + + +++++ +E+ + + +V LS S Q E KLQ ++ + +
Sbjct: 210 AEIEEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQ-EHVKLQKLMEKKNQEL 268
Query: 69 NLLKEQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQHQE---EGNVTVRPF 125
++++Q +E L STI+ + ++ + G + E + N+ +
Sbjct: 269 EVVRQQRERLQEE---------LSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEK 319
Query: 126 PRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQDLQEK 185
R +G ++ + Q R+ + LR QL R ++ Q++
Sbjct: 320 VRELRETVGDLEAMNEMNDELQENARE-----------TELELREQLDMAGARVREAQKR 368
Query: 186 LLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAEREETT 245
+ ++ TV ++KYR Q+ LQD+ E + E ER++
Sbjct: 369 VEAAQETVADYQQTIKKYR--------------QLTAHLQDVNRELTNQQEASVERQQQP 414
Query: 246 SPE 248
PE
Sbjct: 415 PPE 417
Score = 38.1 bits (87), Expect = 0.015
Identities = 73/305 (23%), Positives = 120/305 (39%), Gaps = 80/305 (26%)
Query: 130 SLDLGATFTVDAHQLDNQSQPRDPG---------PQSAFSLPGSTQHLRSQLSQ---CKQ 177
S LG + + A +L + S+P P P + PG+ L S + +
Sbjct: 30 SSSLGPSGSASAGELSS-SEPSTPAQTPLAAPIIPTPVLTSPGAVPPLPSPSKEEEGLRA 88
Query: 178 RYQDLQEKL---LLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGR 234
+ +DL+EKL L A A+ ELEK+++ L K ++ Q DLQ E
Sbjct: 89 QVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKE 148
Query: 235 SENEAEREETTSPEC-------------------------EEHNSLKEMV--------LM 261
++ E +E E +E +LKE V ++
Sbjct: 149 AKEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEIL 208
Query: 262 EGLCSEQGRRGSTLASSSERKPLENQLG----------------KQEEFRVY----GKSE 301
+ E+G G+ ASS + K LE Q KQE ++ K++
Sbjct: 209 KAEIEEKGSDGA--ASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQ 266
Query: 302 NILVLRKDIKDLKAQLQNANKVIQNLKSRV-------RSLSVTSDYSSSL-ERPRKLR-A 352
+ V+R+ + L+ +L A I LK +V + + +D + +L E+ R+LR
Sbjct: 267 ELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRET 326
Query: 353 VGTLE 357
VG LE
Sbjct: 327 VGDLE 331
>gi|205277392 dynactin 1 isoform 3 [Homo sapiens]
Length = 1253
Score = 41.2 bits (95), Expect = 0.002
Identities = 47/243 (19%), Positives = 100/243 (41%), Gaps = 38/243 (15%)
Query: 9 AELKEQMGETMSDGWEIEEDKEKGEVMVETVVTKEGLSESSLQAEFRKLQGKLKNAHNII 68
AE++E+ + + +++++ +E+ + + +V LS S Q E KLQ ++ + +
Sbjct: 324 AEIEEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQ-EHVKLQKLMEKKNQEL 382
Query: 69 NLLKEQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQHQE---EGNVTVRPF 125
++++Q +E L STI+ + ++ + G + E + N+ +
Sbjct: 383 EVVRQQRERLQEE---------LSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEK 433
Query: 126 PRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQDLQEK 185
R +G ++ + Q R+ + LR QL R ++ Q++
Sbjct: 434 VRELRETVGDLEAMNEMNDELQENARE-----------TELELREQLDMAGARVREAQKR 482
Query: 186 LLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAEREETT 245
+ ++ TV ++KYR Q+ LQD+ E + E ER++
Sbjct: 483 VEAAQETVADYQQTIKKYR--------------QLTAHLQDVNRELTNQQEASVERQQQP 528
Query: 246 SPE 248
PE
Sbjct: 529 PPE 531
Score = 38.1 bits (87), Expect = 0.015
Identities = 73/305 (23%), Positives = 120/305 (39%), Gaps = 80/305 (26%)
Query: 130 SLDLGATFTVDAHQLDNQSQPRDPG---------PQSAFSLPGSTQHLRSQLSQ---CKQ 177
S LG + + A +L + S+P P P + PG+ L S + +
Sbjct: 144 SSSLGPSGSASAGELSS-SEPSTPAQTPLAAPIIPTPVLTSPGAVPPLPSPSKEEEGLRA 202
Query: 178 RYQDLQEKL---LLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGR 234
+ +DL+EKL L A A+ ELEK+++ L K ++ Q DLQ E
Sbjct: 203 QVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKE 262
Query: 235 SENEAEREETTSPEC-------------------------EEHNSLKEMV--------LM 261
++ E +E E +E +LKE V ++
Sbjct: 263 AKEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEIL 322
Query: 262 EGLCSEQGRRGSTLASSSERKPLENQLG----------------KQEEFRVY----GKSE 301
+ E+G G+ ASS + K LE Q KQE ++ K++
Sbjct: 323 KAEIEEKGSDGA--ASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQ 380
Query: 302 NILVLRKDIKDLKAQLQNANKVIQNLKSRV-------RSLSVTSDYSSSL-ERPRKLR-A 352
+ V+R+ + L+ +L A I LK +V + + +D + +L E+ R+LR
Sbjct: 381 ELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRET 440
Query: 353 VGTLE 357
VG LE
Sbjct: 441 VGDLE 445
>gi|13259508 dynactin 1 isoform 2 [Homo sapiens]
Length = 1144
Score = 41.2 bits (95), Expect = 0.002
Identities = 47/243 (19%), Positives = 100/243 (41%), Gaps = 38/243 (15%)
Query: 9 AELKEQMGETMSDGWEIEEDKEKGEVMVETVVTKEGLSESSLQAEFRKLQGKLKNAHNII 68
AE++E+ + + +++++ +E+ + + +V LS S Q E KLQ ++ + +
Sbjct: 210 AEIEEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQ-EHVKLQKLMEKKNQEL 268
Query: 69 NLLKEQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQHQE---EGNVTVRPF 125
++++Q +E L STI+ + ++ + G + E + N+ +
Sbjct: 269 EVVRQQRERLQEE---------LSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEK 319
Query: 126 PRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQDLQEK 185
R +G ++ + Q R+ + LR QL R ++ Q++
Sbjct: 320 VRELRETVGDLEAMNEMNDELQENARE-----------TELELREQLDMAGARVREAQKR 368
Query: 186 LLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAEREETT 245
+ ++ TV ++KYR Q+ LQD+ E + E ER++
Sbjct: 369 VEAAQETVADYQQTIKKYR--------------QLTAHLQDVNRELTNQQEASVERQQQP 414
Query: 246 SPE 248
PE
Sbjct: 415 PPE 417
Score = 38.1 bits (87), Expect = 0.015
Identities = 73/305 (23%), Positives = 120/305 (39%), Gaps = 80/305 (26%)
Query: 130 SLDLGATFTVDAHQLDNQSQPRDPG---------PQSAFSLPGSTQHLRSQLSQ---CKQ 177
S LG + + A +L + S+P P P + PG+ L S + +
Sbjct: 30 SSSLGPSGSASAGELSS-SEPSTPAQTPLAAPIIPTPVLTSPGAVPPLPSPSKEEEGLRA 88
Query: 178 RYQDLQEKL---LLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGR 234
+ +DL+EKL L A A+ ELEK+++ L K ++ Q DLQ E
Sbjct: 89 QVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKE 148
Query: 235 SENEAEREETTSPEC-------------------------EEHNSLKEMV--------LM 261
++ E +E E +E +LKE V ++
Sbjct: 149 AKEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEIL 208
Query: 262 EGLCSEQGRRGSTLASSSERKPLENQLG----------------KQEEFRVY----GKSE 301
+ E+G G+ ASS + K LE Q KQE ++ K++
Sbjct: 209 KAEIEEKGSDGA--ASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQ 266
Query: 302 NILVLRKDIKDLKAQLQNANKVIQNLKSRV-------RSLSVTSDYSSSL-ERPRKLR-A 352
+ V+R+ + L+ +L A I LK +V + + +D + +L E+ R+LR
Sbjct: 267 ELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRET 326
Query: 353 VGTLE 357
VG LE
Sbjct: 327 VGDLE 331
>gi|13259510 dynactin 1 isoform 1 [Homo sapiens]
Length = 1278
Score = 41.2 bits (95), Expect = 0.002
Identities = 47/243 (19%), Positives = 100/243 (41%), Gaps = 38/243 (15%)
Query: 9 AELKEQMGETMSDGWEIEEDKEKGEVMVETVVTKEGLSESSLQAEFRKLQGKLKNAHNII 68
AE++E+ + + +++++ +E+ + + +V LS S Q E KLQ ++ + +
Sbjct: 344 AEIEEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQ-EHVKLQKLMEKKNQEL 402
Query: 69 NLLKEQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQHQE---EGNVTVRPF 125
++++Q +E L STI+ + ++ + G + E + N+ +
Sbjct: 403 EVVRQQRERLQEE---------LSQAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEK 453
Query: 126 PRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQDLQEK 185
R +G ++ + Q R+ + LR QL R ++ Q++
Sbjct: 454 VRELRETVGDLEAMNEMNDELQENARE-----------TELELREQLDMAGARVREAQKR 502
Query: 186 LLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAEREETT 245
+ ++ TV ++KYR Q+ LQD+ E + E ER++
Sbjct: 503 VEAAQETVADYQQTIKKYR--------------QLTAHLQDVNRELTNQQEASVERQQQP 548
Query: 246 SPE 248
PE
Sbjct: 549 PPE 551
Score = 38.5 bits (88), Expect = 0.012
Identities = 82/340 (24%), Positives = 131/340 (38%), Gaps = 88/340 (25%)
Query: 103 TELVGSPGKHQHQEEGNVTVRPFP-RPQSL-------DLGATFTVDAHQLDNQSQPRDPG 154
++L G K T RP P RP S LG + + A +L + S+P P
Sbjct: 129 SKLRGLKPKKAPTARKTTTRRPKPTRPASTGVAGASSSLGPSGSASAGELSS-SEPSTPA 187
Query: 155 ---------PQSAFSLPGSTQHLRSQLSQ---CKQRYQDLQEKL---LLSEATVFAQANE 199
P + PG+ L S + + + +DL+EKL L A A+ E
Sbjct: 188 QTPLAAPIIPTPVLTSPGAVPPLPSPSKEEEGLRAQVRDLEEKLETLRLKRAEDKAKLKE 247
Query: 200 LEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAEREETTSPEC---------- 249
LEK+++ L K ++ Q DLQ E ++ E +E E
Sbjct: 248 LEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTADAIEMA 307
Query: 250 ---------------EEHNSLKEMV--------LMEGLCSEQGRRGSTLASSSERKPLEN 286
+E +LKE V +++ E+G G+ ASS + K LE
Sbjct: 308 TLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGA--ASSYQLKQLEE 365
Query: 287 QLG----------------KQEEFRVY----GKSENILVLRKDIKDLKAQLQNANKVIQN 326
Q KQE ++ K++ + V+R+ + L+ +L A I
Sbjct: 366 QNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAESTIDE 425
Query: 327 LKSRV-------RSLSVTSDYSSSL-ERPRKLR-AVGTLE 357
LK +V + + +D + +L E+ R+LR VG LE
Sbjct: 426 LKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLE 465
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 41.2 bits (95), Expect = 0.002
Identities = 86/427 (20%), Positives = 170/427 (39%), Gaps = 91/427 (21%)
Query: 1 MLSLCLENAELKEQMGETMSDGWEIEEDKEKGEVMVETV---VTKEGLSESSLQAEFRKL 57
+L+L + A+ K+++ + + +EE K+K E + + ++ L+ L+ +L
Sbjct: 1366 VLALQSQLADTKKKVDDDLGTIESLEEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRL 1425
Query: 58 QGKLKNAHNIINLLKEQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQHQEE 117
Q +L + ++L ++ V S+ E K +LL S R E + + + +E
Sbjct: 1426 QQELDDL--TVDLDHQRQVASNLEKKQKKFDQLLAEEKSISARYAEERDRAEAEAREKET 1483
Query: 118 GNVTVRPFPRPQSLDLGATFTVDAHQL-----DNQSQPRDPGPQSAFSLPGSTQHLRSQL 172
+++ ++L+ F QL D S D G ++ L S + L Q+
Sbjct: 1484 KALSLAR-ALEEALEAKEEFERQNKQLRADMEDLMSSKDDVG-KNVHELEKSKRALEQQV 1541
Query: 173 SQCKQRYQDLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETC 232
+ + + ++L+++L QA E K R+ + +++ Q + +Q
Sbjct: 1542 EEMRTQLEELEDEL---------QATEDAKLRLEVNMQAMKAQFERDLQT---------- 1582
Query: 233 GRSENEAEREETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGKQE 292
R E E++ + E + E+ E R+ LA +S++K
Sbjct: 1583 -RDEQNEEKKRLLIKQVRELEA--EL--------EDERKQRALAVASKKK---------- 1621
Query: 293 EFRVYGKSENILVLRKDIKDLKAQLQNANKVIQNLKSRVRSLSV-TSDYSSSLERPRKLR 351
+ D+KDL+AQ++ ANK + ++R L DY LE R R
Sbjct: 1622 -------------MEIDLKDLEAQIEAANKARDEVIKQLRKLQAQMKDYQRELEEARASR 1668
Query: 352 AVGTLEGSSPHSVPDEDEGWLSDGTGAFYSPGLQAKKDLESLIQRVSQLEAQLPKNGLEE 411
DE ++ +++K L+SL + QL+ +L +
Sbjct: 1669 --------------DE-----------IFAQSKESEKKLKSLEAEILQLQEELASSERAR 1703
Query: 412 KLAEELR 418
+ AE+ R
Sbjct: 1704 RHAEQER 1710
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 40.8 bits (94), Expect = 0.002
Identities = 86/452 (19%), Positives = 180/452 (39%), Gaps = 61/452 (13%)
Query: 8 NAELKEQMGETMSDGWEIEEDKEKGEVMVETVVTKEGLSESSLQAEFRKLQGKLKNAHNI 67
+ +LK+ E S ++EE++E + + + T + ++ + G L+ A +
Sbjct: 1328 STKLKQVEDEKNSFREQLEEEEEAKHNLEKQIATLHA-QVADMKKKMEDSVGCLETAEEV 1386
Query: 68 INLLKEQLVLSSKEGNSKLTPELLVHLTSTIERINTELVGSPGKHQHQEEGNVTVRPFPR 127
L++ L S+ K+ + T T + + + HQ Q N+ +
Sbjct: 1387 KRKLQKDLEGLSQRHEEKVAAYDKLEKTKTRLQQELDDLLVDLDHQRQSACNLEKKQKKF 1446
Query: 128 PQSL----DLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQDLQ 183
Q L + A + + + + +++ ++ S +++L + ++++
Sbjct: 1447 DQLLAEEKTISAKYAEERDRAEAEAREKETKALSLARALEEAMEQKAELERLNKQFRTEM 1506
Query: 184 EKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDLGYETCGRSENEAEREE 243
E L+ S+ V +ELEK + L +Q ++++ L++L E E +
Sbjct: 1507 EDLMSSKDDVGKSVHELEKSKRAL------EQQVEEMKTQLEEL----------EDELQA 1550
Query: 244 TTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGKQE-EFRVYGKSEN 302
T + +L+ M E+ +G S ++K L Q+ + E E K +
Sbjct: 1551 TEDAKLRLEVNLQAMKAQ----FERDLQGRDEQSEEKKKQLVRQVREMEAELEDERKQRS 1606
Query: 303 ILV-----LRKDIKDLKAQLQNAN-----------KVIQNLKSRVRSLSVT-----SDYS 341
+ V L D+KDL+A + +AN K+ +K +R L T +
Sbjct: 1607 MAVAARKKLEMDLKDLEAHIDSANKNRDEAIKQLRKLQAQMKDCMRELDDTRASREEILA 1666
Query: 342 SSLERPRKLRA-----------VGTLEGSSPHSVPDEDEGWLSDGTGAFYSPGLQAKKDL 390
+ E +KL++ + E + + + DE L+D G A ++
Sbjct: 1667 QAKENEKKLKSMEAEMIQLQEELAAAERAKRQAQQERDE--LADEIANSSGKGALALEEK 1724
Query: 391 ESLIQRVSQLEAQL-PKNGLEEKLAEELRSAS 421
L R++QLE +L + G E + + L+ A+
Sbjct: 1725 RRLEARIAQLEEELEEEQGNTELINDRLKKAN 1756
Score = 35.0 bits (79), Expect = 0.13
Identities = 46/214 (21%), Positives = 94/214 (43%), Gaps = 32/214 (14%)
Query: 166 QHLRSQLSQCKQRYQDLQE----------KLLLSEATVFAQANELEKYRVMLTGESLVKQ 215
QHL+++ + +Q Q+L+E KL L + T A+ +LE+ +++L ++
Sbjct: 932 QHLQAEKKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEEQIILEDQNCKLA 991
Query: 216 DSKQIQVDLQDLGYETCGRSENEAEREETTSPECEEHNSLKEMV--LMEGLCSEQGRR-- 271
K++ D + N E EE + + N + M+ L E L E+ +R
Sbjct: 992 KEKKLLED------RIAEFTTNLTEEEEKSKSLAKLKNKHEAMITDLEERLRREEKQRQE 1045
Query: 272 ---------GSTLASSSERKPLENQLGKQEEFRVYGKSENILVLRKDIKDLKAQLQNANK 322
G + S + L+ Q+ + + ++ K E + +++ AQ A K
Sbjct: 1046 LEKTRRKLEGDSTDLSDQIAELQAQIA-ELKMQLAKKEEELQAALARVEEEAAQKNMALK 1104
Query: 323 VIQNLKSRVRSL--SVTSDYSSSLERPRKLRAVG 354
I+ L+S++ L + S+ +S + ++ R +G
Sbjct: 1105 KIRELESQISELQEDLESERASRNKAEKQKRDLG 1138
>gi|224589132 hypothetical protein LOC100132406 [Homo sapiens]
Length = 3628
Score = 40.0 bits (92), Expect = 0.004
Identities = 43/201 (21%), Positives = 91/201 (45%), Gaps = 23/201 (11%)
Query: 7 ENAELKEQMGETMSDGWEIEEDKEKGEVMVETVVTKEGLSESSLQAEFRKLQGKLKNAHN 66
E L + + + +S E +ED+++ +V VE E + ESS E +K + +
Sbjct: 150 EGCRLAQHLVQKLSP--ENDEDEDE-DVQVEEA---EKVLESSAPREVQKAEESKVPEDS 203
Query: 67 IINLLKEQLVLSSKEGNSKLT---PELLVHLTSTIERINTELVGSPGKHQHQEEGNVTVR 123
+ E+ ++ + P + +T + +N+ LV + + + +
Sbjct: 204 L-----EECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNIL 258
Query: 124 PFPRPQSLDLGATFTVDAHQLDNQSQPRDPGPQSAFSLPGSTQHLRSQLSQCKQRYQDLQ 183
P P P S + V A L ++ ++ ++ + LR QL++ KQ++++L+
Sbjct: 259 PVPGPTSSATNVSMVVSAGPLSSE--------KAEMNILEINEKLRPQLAEKKQQFRNLK 310
Query: 184 EKLLLSEATVFAQANELEKYR 204
EK L++ + F AN+ +KY+
Sbjct: 311 EKCFLTQLSGFL-ANQQKKYK 330
Score = 32.3 bits (72), Expect = 0.84
Identities = 53/210 (25%), Positives = 85/210 (40%), Gaps = 45/210 (21%)
Query: 168 LRSQLSQCKQRYQDLQEKLLLSEATVFAQANELEKYRVMLTGESLVKQDSKQIQVDLQDL 227
LR QL++ KQ++++L+EK L++ F AN +KY+
Sbjct: 24 LRPQLAEKKQQFRNLKEKCFLTQLAGFL-ANRQKKYK----------------------- 59
Query: 228 GYETCGRSENEAEREETTSPECEEHNSLKEMVLMEGLCSEQGRRGSTLASSSERK--PLE 285
YE C R E E + LK+ +E+ R+ L S ER+ L
Sbjct: 60 -YEECKDLIKFMLRNERQFKEEKLAEQLKQ--------AEELRQYKVLVHSQERELTQLR 110
Query: 286 NQL--GKQEEFRVYGKSENILVLRKDIK----DLKAQLQNANKVIQNLKSRVRSLSVTSD 339
+L G+ +Y + +L + K DL+ QL ++ Q+L V+ LS +D
Sbjct: 111 EKLREGRDASRSLYEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHL---VQKLSPEND 167
Query: 340 YSSSLERPRKLRAVGTLEGSSPHSVPDEDE 369
E + A LE S+P V +E
Sbjct: 168 EDED-EDVQVEEAEKVLESSAPREVQKAEE 196
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 40.0 bits (92), Expect = 0.004
Identities = 88/418 (21%), Positives = 167/418 (39%), Gaps = 65/418 (15%)
Query: 28 DKEKGEVMVETVVTKEGLSESSLQAEFRKLQGKLKNAHNI-INLLKEQLVLSSKEGNSKL 86
+KEK V+ + ++ES +AE +L+ +L +H ++ LKE L + + KL
Sbjct: 604 EKEKNAVL-------DRMAESQ-EAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKL 655
Query: 87 TPELLVHLTSTIERINTELVGSPGKHQHQEEGNVTVRPFPRPQSLDLGATFTVDAHQLDN 146
L +H I+ + E+ Q +++ +T + L L + D Q
Sbjct: 656 KDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLIT-----KQNQLILEISKLKDLQQSLV 710
Query: 147 QSQPRDPGPQSAFSLPGSTQHLRSQLSQ---CKQRYQDLQEKLLLSEATVFAQANELEKY 203
S+ + Q L + LR + + +Q Q+LQ K L E + + N+L++
Sbjct: 711 NSKSEEMTLQIN-ELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEK 769
Query: 204 RVMLTGESLVKQDSKQIQVDLQDLG-----------YETCGRSENEAEREETTSPECEEH 252
L E+ + +D K+ D+ + ++ ++ E+ EE+
Sbjct: 770 FAQLEAENSILKDEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEEN 829
Query: 253 NSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGKQEEFRVYGKSENILVLRKDIKD 312
LK+ + +E+ + S +E+ N QEE+ +L ++ D++D
Sbjct: 830 EDLKQQCIQ---LNEEIEKQRNTFSFAEKNFEVNYQELQEEYAC------LLKVKDDLED 880
Query: 313 LKAQLQNANKVIQNLKSRVRSLSVTSDYSSSLERPRKLRAVGTLEGSSPHSVPDEDEGWL 372
K NK KS++++L+ L+ + SV DED+ ++
Sbjct: 881 SK------NKQELEYKSKLKALN----------EELHLQRINPTTVKMKSSVFDEDKTFV 924
Query: 373 SD----------GTGAFYSPGLQAKKDLESLIQRVSQLEAQL-PKNGLEEKLAEELRS 419
++ T K++ L QR+S L QL K+G L EE++S
Sbjct: 925 AETLEMGEVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHGEISFLNEEVKS 982
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 40.0 bits (92), Expect = 0.004
Identities = 88/418 (21%), Positives = 167/418 (39%), Gaps = 65/418 (15%)
Query: 28 DKEKGEVMVETVVTKEGLSESSLQAEFRKLQGKLKNAHNI-INLLKEQLVLSSKEGNSKL 86
+KEK V+ + ++ES +AE +L+ +L +H ++ LKE L + + KL
Sbjct: 604 EKEKNAVL-------DRMAESQ-EAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKL 655
Query: 87 TPELLVHLTSTIERINTELVGSPGKHQHQEEGNVTVRPFPRPQSLDLGATFTVDAHQLDN 146
L +H I+ + E+ Q +++ +T + L L + D Q
Sbjct: 656 KDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLIT-----KQNQLILEISKLKDLQQSLV 710
Query: 147 QSQPRDPGPQSAFSLPGSTQHLRSQLSQ---CKQRYQDLQEKLLLSEATVFAQANELEKY 203
S+ + Q L + LR + + +Q Q+LQ K L E + + N+L++
Sbjct: 711 NSKSEEMTLQIN-ELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEK 769
Query: 204 RVMLTGESLVKQDSKQIQVDLQDLG-----------YETCGRSENEAEREETTSPECEEH 252
L E+ + +D K+ D+ + ++ ++ E+ EE+
Sbjct: 770 FAQLEAENSILKDEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEEN 829
Query: 253 NSLKEMVLMEGLCSEQGRRGSTLASSSERKPLENQLGKQEEFRVYGKSENILVLRKDIKD 312
LK+ + +E+ + S +E+ N QEE+ +L ++ D++D
Sbjct: 830 EDLKQQCIQ---LNEEIEKQRNTFSFAEKNFEVNYQELQEEYAC------LLKVKDDLED 880
Query: 313 LKAQLQNANKVIQNLKSRVRSLSVTSDYSSSLERPRKLRAVGTLEGSSPHSVPDEDEGWL 372
K NK KS++++L+ L+ + SV DED+ ++
Sbjct: 881 SK------NKQELEYKSKLKALN----------EELHLQRINPTTVKMKSSVFDEDKTFV 924
Query: 373 SD----------GTGAFYSPGLQAKKDLESLIQRVSQLEAQL-PKNGLEEKLAEELRS 419
++ T K++ L QR+S L QL K+G L EE++S
Sbjct: 925 AETLEMGEVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHGEISFLNEEVKS 982
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.127 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,052,000
Number of Sequences: 37866
Number of extensions: 748536
Number of successful extensions: 3197
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 2942
Number of HSP's gapped (non-prelim): 450
length of query: 424
length of database: 18,247,518
effective HSP length: 105
effective length of query: 319
effective length of database: 14,271,588
effective search space: 4552636572
effective search space used: 4552636572
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.