BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|169217624 PREDICTED: hypothetical protein isoform 1 [Homo sapiens] (186 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169217624 PREDICTED: hypothetical protein isoform 1 [Homo sap... 407 e-114 gi|169217622 PREDICTED: hypothetical protein isoform 2 [Homo sap... 407 e-114 gi|113420756 PREDICTED: hypothetical protein [Homo sapiens] 48 6e-06 gi|38569475 metaxin 1 isoform 1 [Homo sapiens] 34 0.083 gi|38569477 metaxin 1 isoform 2 [Homo sapiens] 34 0.083 gi|239755232 PREDICTED: hypothetical protein [Homo sapiens] 31 0.54 gi|239749768 PREDICTED: hypothetical protein [Homo sapiens] 31 0.54 gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo ... 31 0.54 gi|150170699 kinesin family member 26A [Homo sapiens] 31 0.70 gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 30 0.92 gi|112821688 G protein-regulated inducer of neurite outgrowth 2 ... 30 0.92 gi|227430410 POU class 5 homeobox 1B [Homo sapiens] 30 1.2 gi|59709427 XK, Kell blood group complex subunit-related family,... 30 1.2 gi|169172087 PREDICTED: hypothetical protein [Homo sapiens] 30 1.6 gi|187960059 syndecan 3 [Homo sapiens] 29 2.0 gi|24308115 interferon regulatory factor 2 binding protein 1 [Ho... 29 2.0 gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 29 2.7 gi|195972890 unc-84 homolog A isoform a [Homo sapiens] 29 2.7 gi|50428940 mediator complex subunit 25 [Homo sapiens] 29 2.7 gi|239741968 PREDICTED: hypothetical protein [Homo sapiens] 28 3.5 gi|153792110 HEG homolog 1 [Homo sapiens] 28 3.5 gi|13162290 betaine-homocysteine methyltransferase 2 [Homo sapiens] 28 4.6 gi|157384982 transducin-like enhancer protein 3 isoform a [Homo ... 28 4.6 gi|47777330 hypothetical protein LOC115939 [Homo sapiens] 28 4.6 gi|55770862 thyroglobulin [Homo sapiens] 28 5.9 gi|5032117 sigma non-opioid intracellular receptor 1 isoform 1 [... 28 5.9 gi|13259508 dynactin 1 isoform 2 [Homo sapiens] 28 5.9 gi|13259510 dynactin 1 isoform 1 [Homo sapiens] 28 5.9 gi|14277690 hypothetical protein LOC9750 isoform 2 [Homo sapiens] 28 5.9 gi|164414421 hypothetical protein LOC9750 isoform 1 [Homo sapiens] 28 5.9 >gi|169217624 PREDICTED: hypothetical protein isoform 1 [Homo sapiens] Length = 186 Score = 407 bits (1045), Expect = e-114 Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MVLPLFASFCLLDAVGPEICRVHRSIWWKPWHRACPRGQVWVSLVSSGLEFTRRWWQWET 60 MVLPLFASFCLLDAVGPEICRVHRSIWWKPWHRACPRGQVWVSLVSSGLEFTRRWWQWET Sbjct: 1 MVLPLFASFCLLDAVGPEICRVHRSIWWKPWHRACPRGQVWVSLVSSGLEFTRRWWQWET 60 Query: 61 GCTGTDFFVAGEDNVLPPGKAAHGFWSRGLGWQLWDLLPQLRWLRRRLMNELNCLGSGER 120 GCTGTDFFVAGEDNVLPPGKAAHGFWSRGLGWQLWDLLPQLRWLRRRLMNELNCLGSGER Sbjct: 61 GCTGTDFFVAGEDNVLPPGKAAHGFWSRGLGWQLWDLLPQLRWLRRRLMNELNCLGSGER 120 Query: 121 EDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEEVSSRHK 180 EDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEEVSSRHK Sbjct: 121 EDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEEVSSRHK 180 Query: 181 SFSFFS 186 SFSFFS Sbjct: 181 SFSFFS 186 >gi|169217622 PREDICTED: hypothetical protein isoform 2 [Homo sapiens] Length = 186 Score = 407 bits (1045), Expect = e-114 Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MVLPLFASFCLLDAVGPEICRVHRSIWWKPWHRACPRGQVWVSLVSSGLEFTRRWWQWET 60 MVLPLFASFCLLDAVGPEICRVHRSIWWKPWHRACPRGQVWVSLVSSGLEFTRRWWQWET Sbjct: 1 MVLPLFASFCLLDAVGPEICRVHRSIWWKPWHRACPRGQVWVSLVSSGLEFTRRWWQWET 60 Query: 61 GCTGTDFFVAGEDNVLPPGKAAHGFWSRGLGWQLWDLLPQLRWLRRRLMNELNCLGSGER 120 GCTGTDFFVAGEDNVLPPGKAAHGFWSRGLGWQLWDLLPQLRWLRRRLMNELNCLGSGER Sbjct: 61 GCTGTDFFVAGEDNVLPPGKAAHGFWSRGLGWQLWDLLPQLRWLRRRLMNELNCLGSGER 120 Query: 121 EDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEEVSSRHK 180 EDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEEVSSRHK Sbjct: 121 EDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEEVSSRHK 180 Query: 181 SFSFFS 186 SFSFFS Sbjct: 181 SFSFFS 186 >gi|113420756 PREDICTED: hypothetical protein [Homo sapiens] Length = 117 Score = 47.8 bits (112), Expect = 6e-06 Identities = 30/58 (51%), Positives = 33/58 (56%), Gaps = 6/58 (10%) Query: 117 SGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEE 174 SGEREDT + R+PAPAPS + VGL RGGML PGG A AD EE Sbjct: 8 SGEREDTRDLREPAPAPS------GLVPSRPGWVGLPRVGRGGMLLPGGAAVADLQEE 59 >gi|38569475 metaxin 1 isoform 1 [Homo sapiens] Length = 466 Score = 33.9 bits (76), Expect = 0.083 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 103 WLRRR----------LMNELNCLGSGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGL 152 W RRR L + L G R +PE R P P S ++ +LA G+ G Sbjct: 57 WTRRRDTPRRAGPTALSRYVGHLWMGRRPPSPEARGPVPRSSAASRARRSLASPGISPGP 116 Query: 153 QPGKRGGMLPPGG--IAAADPHEEV 175 GG + GG A+ H+EV Sbjct: 117 LTATIGGAVAGGGPRQGRAEAHKEV 141 >gi|38569477 metaxin 1 isoform 2 [Homo sapiens] Length = 435 Score = 33.9 bits (76), Expect = 0.083 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 103 WLRRR----------LMNELNCLGSGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGL 152 W RRR L + L G R +PE R P P S ++ +LA G+ G Sbjct: 57 WTRRRDTPRRAGPTALSRYVGHLWMGRRPPSPEARGPVPRSSAASRARRSLASPGISPGP 116 Query: 153 QPGKRGGMLPPGG--IAAADPHEEV 175 GG + GG A+ H+EV Sbjct: 117 LTATIGGAVAGGGPRQGRAEAHKEV 141 >gi|239755232 PREDICTED: hypothetical protein [Homo sapiens] Length = 501 Score = 31.2 bits (69), Expect = 0.54 Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 15/82 (18%) Query: 94 LWDLLPQLRWL------RRRLMNELNCLGS---GEREDTPEGRKPAPAPSRSTTCCSALA 144 LW L P+ R RRR + + LG+ G +P G +P P T L Sbjct: 389 LWPLQPRARRQGGSDRHRRRGQSGASGLGTAAAGAERTSPVGARPPPPARLVTNTAPTLG 448 Query: 145 GAG-LLVGLQPGKRGGMLPPGG 165 GAG L G RGG PP G Sbjct: 449 GAGPRLEG-----RGGAAPPAG 465 >gi|239749768 PREDICTED: hypothetical protein [Homo sapiens] Length = 591 Score = 31.2 bits (69), Expect = 0.54 Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 15/82 (18%) Query: 94 LWDLLPQLRWL------RRRLMNELNCLGS---GEREDTPEGRKPAPAPSRSTTCCSALA 144 LW L P+ R RRR + + LG+ G +P G +P P T L Sbjct: 479 LWPLQPRARRQGGSDRHRRRGQSGASGLGTAAAGAERTSPVGARPPPPARLVTNTAPTLG 538 Query: 145 GAG-LLVGLQPGKRGGMLPPGG 165 GAG L G RGG PP G Sbjct: 539 GAGPRLEG-----RGGAAPPAG 555 >gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo sapiens] Length = 591 Score = 31.2 bits (69), Expect = 0.54 Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 15/82 (18%) Query: 94 LWDLLPQLRWL------RRRLMNELNCLGS---GEREDTPEGRKPAPAPSRSTTCCSALA 144 LW L P+ R RRR + + LG+ G +P G +P P T L Sbjct: 479 LWPLQPRARRQGGSDRHRRRGQSGASGLGTAAAGAERTSPVGARPPPPARLVTNTAPTLG 538 Query: 145 GAG-LLVGLQPGKRGGMLPPGG 165 GAG L G RGG PP G Sbjct: 539 GAGPRLEG-----RGGAAPPAG 555 >gi|150170699 kinesin family member 26A [Homo sapiens] Length = 1882 Score = 30.8 bits (68), Expect = 0.70 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 101 LRWLRRRLMNELNCLGSGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGM 160 L+ L R M+ L S E D P G P+ AP +TT G G QPG+ G Sbjct: 132 LQQLTREAMHLLQAPASHEDLDAPHGG-PSLAPPSTTTSSRDTPGPAGPAGRQPGRAGPD 190 Query: 161 LPPGGIAAADPHEEVS 176 G + P +VS Sbjct: 191 RTKGLAWSPGPSVQVS 206 >gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] Length = 379 Score = 30.4 bits (67), Expect = 0.92 Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 9/64 (14%) Query: 118 GEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEEVSS 177 G R P GR PAP R +T A A GL+P +RG AA P +E SS Sbjct: 130 GVRSCAPPGRCPAPPHPRESTTSFASAPPRPAPGLEP-QRG--------PAASPPQEPSS 180 Query: 178 RHKS 181 R S Sbjct: 181 RPPS 184 >gi|112821688 G protein-regulated inducer of neurite outgrowth 2 [Homo sapiens] Length = 458 Score = 30.4 bits (67), Expect = 0.92 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 115 LGSGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGG---MLPPGGIAA 168 LG + +P A +TT C AL A LL G++ + GG LP GI A Sbjct: 201 LGDTTAHSSSAQAEPKAAEQLATTTCHALPPAALLCGMREVRAGGCCHALPATGILA 257 >gi|227430410 POU class 5 homeobox 1B [Homo sapiens] Length = 359 Score = 30.0 bits (66), Expect = 1.2 Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 15/99 (15%) Query: 77 PPGKAAHGFWSRGLGWQLWDLLPQLRWLRRRLMNELNCLGSGEREDTPE-GRKPAPAPSR 135 PPG G W GW + L WL + +G G + G P P P Sbjct: 14 PPGGGGDGPWGAEPGW-----VDPLTWLSFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYE 68 Query: 136 STTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEE 174 C +A G VG+ G++P GG+ + P E Sbjct: 69 ---LCGGMAYCGPQVGV------GLVPQGGLETSQPESE 98 >gi|59709427 XK, Kell blood group complex subunit-related family, member 4 [Homo sapiens] Length = 650 Score = 30.0 bits (66), Expect = 1.2 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Query: 116 GSGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGG 165 GSG ++ G P + CC AG+G G G GG+ PGG Sbjct: 41 GSGAEDEEAAGGGCCPDGGGCSRCCCCCAGSGGSAG--SGGSGGVAGPGG 88 >gi|169172087 PREDICTED: hypothetical protein [Homo sapiens] Length = 278 Score = 29.6 bits (65), Expect = 1.6 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Query: 124 PEGRKPAPAPS--RSTTCCSALAGAGLL-VGLQPGKRGGMLPP 163 P R+PAPAP + CC+ALAG + G G+ PP Sbjct: 91 PAARRPAPAPRGPKQPGCCAALAGGDTNGEWILRGSTWGLCPP 133 >gi|187960059 syndecan 3 [Homo sapiens] Length = 442 Score = 29.3 bits (64), Expect = 2.0 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 3/36 (8%) Query: 128 KPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPP 163 KP P P R+ A AGAG G PG RG +LPP Sbjct: 2 KPGP-PHRAGAAHGAGAGAGAAAG--PGARGLLLPP 34 >gi|24308115 interferon regulatory factor 2 binding protein 1 [Homo sapiens] Length = 584 Score = 29.3 bits (64), Expect = 2.0 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 8/55 (14%) Query: 123 TPEGRKPAPAPSRSTTCCSALA-GAGLLVGLQPGKR-------GGMLPPGGIAAA 169 T GR P P+P+ T S LA G G + G R G++PPG +AAA Sbjct: 116 TSSGRLPLPSPALEYTLGSRLANGLGREEAVAEGARRALLGSMPGLMPPGLLAAA 170 >gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] Length = 261 Score = 28.9 bits (63), Expect = 2.7 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Query: 128 KPAPAPSRSTTCCSALAGA---GLLVGLQPGKRGGMLPPGG 165 +PAP P+ + ALAG G+ +PG GG PGG Sbjct: 117 QPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGG 157 >gi|195972890 unc-84 homolog A isoform a [Homo sapiens] Length = 785 Score = 28.9 bits (63), Expect = 2.7 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Query: 75 VLPPGKAAHG-FWSRGLGWQLWDLLPQLRWL 104 V+ PGKAA G FW G+GW + + + WL Sbjct: 249 VVAPGKAASGVFWWLGIGW--YQFVTLISWL 277 >gi|50428940 mediator complex subunit 25 [Homo sapiens] Length = 747 Score = 28.9 bits (63), Expect = 2.7 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 129 PAPAPSRSTTCCSALA-GAGLLVGLQPG--KRGGMLPPGGIAAADP 171 P P P+ + S +A G+GL QPG G + PGG++ P Sbjct: 336 PKPPPASQPSLVSTVAPGSGLAPTAQPGAPSMAGTVAPGGVSGPSP 381 >gi|239741968 PREDICTED: hypothetical protein [Homo sapiens] Length = 263 Score = 28.5 bits (62), Expect = 3.5 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 117 SGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEEVS 176 +G+ T +P+P+ R CC+ L G+ L +PG GG G A H V Sbjct: 194 AGDTRRTEARAEPSPSRRRRRRCCAPLPGS--LPARRPG-CGGRRAGGARAGQGAHTGVG 250 Query: 177 SRHKSFS 183 + ++ S Sbjct: 251 AEDRTLS 257 >gi|153792110 HEG homolog 1 [Homo sapiens] Length = 1381 Score = 28.5 bits (62), Expect = 3.5 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 11/52 (21%) Query: 124 PEGRKPAPAPSRSTTCCSALAGAGLLVGLQ-----------PGKRGGMLPPG 164 P R P P+P+R + LAGAGL + L+ P +R G PG Sbjct: 28 PGTRDPPPSPARRALSLAPLAGAGLELQLERRPEREPPPTPPRERRGPATPG 79 >gi|13162290 betaine-homocysteine methyltransferase 2 [Homo sapiens] Length = 363 Score = 28.1 bits (61), Expect = 4.6 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 8/63 (12%) Query: 69 VAGEDNVLPPGKAAHGFWSRGLGWQLWDLLPQLRWLRRRLMNEL--NCLGSGEREDTPEG 126 +A E LPP HG W GL + W+R R E N L + R P Sbjct: 305 LAPERGFLPPASEKHGSWGSGLD------MHTKPWIRARARREYWENLLPASGRPFCPSL 358 Query: 127 RKP 129 KP Sbjct: 359 SKP 361 >gi|157384982 transducin-like enhancer protein 3 isoform a [Homo sapiens] Length = 772 Score = 28.1 bits (61), Expect = 4.6 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 9/52 (17%) Query: 118 GEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAA 169 G + +TP R AP P STT GL PGK GM P G +A+A Sbjct: 314 GLKSNTPTPRNDAPTPGTSTT-------PGL--RSMPGKPPGMDPIGIMASA 356 >gi|47777330 hypothetical protein LOC115939 [Homo sapiens] Length = 312 Score = 28.1 bits (61), Expect = 4.6 Identities = 15/43 (34%), Positives = 20/43 (46%) Query: 125 EGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIA 167 EG +P P+RS + GA L ++PG G PG A Sbjct: 13 EGGRPRHLPTRSLEAFAEEVGAALQASVEPGAADGEGGPGPAA 55 >gi|55770862 thyroglobulin [Homo sapiens] Length = 2768 Score = 27.7 bits (60), Expect = 5.9 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Query: 16 GPEICRVHRSIWWK--PWHRACPRGQVWVSLVSSG 48 GP IC + W P RAC R Q+W ++ + G Sbjct: 1260 GPLICSLESGRWESQLPQPRACQRPQLWQTIQTQG 1294 >gi|5032117 sigma non-opioid intracellular receptor 1 isoform 1 [Homo sapiens] Length = 223 Score = 27.7 bits (60), Expect = 5.9 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Query: 38 GQVWVSLVSSGLEFTRRWWQWETGCTGTDFFVAGEDNVLPPGKAAHGFW 86 G+ W + + + T + QW G T ++ F GE V PG+A W Sbjct: 118 GRYWAEISDTIISGT--FHQWREGTTKSEVFYPGETVVHGPGEATAVEW 164 >gi|13259508 dynactin 1 isoform 2 [Homo sapiens] Length = 1144 Score = 27.7 bits (60), Expect = 5.9 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 5/74 (6%) Query: 98 LPQLRWLRRRLMNELNCLGSGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKR 157 + QL + L LN + + T EG + P PS T S +AG G PG+ Sbjct: 889 IDQLEAEKAELKQRLN----SQSKRTIEGLR-GPPPSGIATLVSGIAGEEQQRGAIPGQA 943 Query: 158 GGMLPPGGIAAADP 171 G +P G+ P Sbjct: 944 PGSVPGPGLVKDSP 957 >gi|13259510 dynactin 1 isoform 1 [Homo sapiens] Length = 1278 Score = 27.7 bits (60), Expect = 5.9 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 5/74 (6%) Query: 98 LPQLRWLRRRLMNELNCLGSGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKR 157 + QL + L LN + + T EG + P PS T S +AG G PG+ Sbjct: 1023 IDQLEAEKAELKQRLN----SQSKRTIEGLR-GPPPSGIATLVSGIAGEEQQRGAIPGQA 1077 Query: 158 GGMLPPGGIAAADP 171 G +P G+ P Sbjct: 1078 PGSVPGPGLVKDSP 1091 >gi|14277690 hypothetical protein LOC9750 isoform 2 [Homo sapiens] Length = 591 Score = 27.7 bits (60), Expect = 5.9 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 7/41 (17%) Query: 113 NCLGSGER-------EDTPEGRKPAPAPSRSTTCCSALAGA 146 N LG G+ ED E RKPA APS + S+ AGA Sbjct: 438 NSLGEGQEPKSHLKEEDPEEPRKPASAPSEACRRQSSGAGA 478 >gi|164414421 hypothetical protein LOC9750 isoform 1 [Homo sapiens] Length = 1068 Score = 27.7 bits (60), Expect = 5.9 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 7/41 (17%) Query: 113 NCLGSGER-------EDTPEGRKPAPAPSRSTTCCSALAGA 146 N LG G+ ED E RKPA APS + S+ AGA Sbjct: 488 NSLGEGQEPKSHLKEEDPEEPRKPASAPSEACRRQSSGAGA 528 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.323 0.139 0.496 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,549,816 Number of Sequences: 37866 Number of extensions: 517235 Number of successful extensions: 1620 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 1605 Number of HSP's gapped (non-prelim): 34 length of query: 186 length of database: 18,247,518 effective HSP length: 96 effective length of query: 90 effective length of database: 14,612,382 effective search space: 1315114380 effective search space used: 1315114380 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.