Guide to the Human Genome
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Name: SIGMAR1 Sequence: fasta or formatted (223aa) NCBI GI: 5032117
Description:

sigma non-opioid intracellular receptor 1 isoform 1

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [192aa] sigma non-opioid intracellular receptor 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         22           2
 C cysteine            0.4          1           1
 D aspartate           2.7          6           1
 E glutamate           6.7         15           2
 F phenylalanine       5.4         12           1
 G glycine             9.4         21           2
 H histidine           3.1          7           1
 I isoleucine          2.7          6           2
 K lysine              0.4          1           1
 L leucine            13.0         29           3
 M methionine          1.8          4           1
 N asparagine          0.9          2           1
 P proline             3.1          7           1
 Q glutamine           4.5         10           1
 R arginine            6.3         14           2
 S serine              5.4         12           1
 T threonine           7.6         17           2
 V valine              8.1         18           2
 W tryptophan          4.9         11           1
 Y tyrosine            3.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sigma non-opioid intracellular receptor 1 isoform 1 [... 
SIGMAR1               0.810   sigma non-opioid intracellular receptor 1 isoform 2 ...
XKR8                  0.016   XK, Kell blood group complex subunit-related family,...
RSAD1                 0.016   radical S-adenosyl methionine domain containing 1 [Ho...
USHBP1                0.009   Usher syndrome 1C binding protein 1 
LOC100290496          0.007   PREDICTED: hypothetical protein XP_002348126 
OR5D14                0.007   olfactory receptor, family 5, subfamily D, member 14...
LOC100131686          0.007   PREDICTED: hypothetical protein isoform 1 
LOC100131686          0.007   PREDICTED: hypothetical protein isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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