Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131686 Sequence: fasta or formatted (186aa) NCBI GI: 169217624
Description:

PREDICTED: hypothetical protein isoform 1

Not currently referenced in the text

Other entries for this name:
alt mRNA {186aa} PREDICTED: hypothetical protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         14           3
 C cysteine            3.8          7           2
 D aspartate           3.2          6           1
 E glutamate           5.4         10           2
 F phenylalanine       4.8          9           2
 G glycine            11.3         21           2
 H histidine           2.7          5           1
 I isoleucine          1.6          3           1
 K lysine              2.7          5           1
 L leucine            11.3         21           2
 M methionine          1.6          3           1
 N asparagine          1.6          3           1
 P proline             8.1         15           2
 Q glutamine           2.7          5           1
 R arginine            8.6         16           3
 S serine              8.1         15           2
 T threonine           3.8          7           2
 V valine              5.4         10           1
 W tryptophan          5.9         11           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 1 
LOC100131686          1.000   PREDICTED: hypothetical protein isoform 2 
LOC728701             0.060   PREDICTED: hypothetical protein 
MTX1                  0.024   metaxin 1 isoform 1 
MTX1                  0.024   metaxin 1 isoform 2 
LOC729575             0.016   PREDICTED: hypothetical protein 
LOC100288110          0.016   PREDICTED: hypothetical protein 
LOC100288110          0.016   PREDICTED: hypothetical protein XP_002343007 
KIF26A                0.016   kinesin family member 26A 
C17orf96              0.013   hypothetical protein LOC100170841 
GPRIN2                0.013   G protein-regulated inducer of neurite outgrowth 2 ...
POU5F1B               0.013   POU class 5 homeobox 1B 
XKR4                  0.013   XK, Kell blood group complex subunit-related family,...
LOC645249             0.013   PREDICTED: hypothetical protein 
SDC3                  0.010   syndecan 3 
IRF2BP1               0.010   interferon regulatory factor 2 binding protein 1 [Ho...
BBC3                  0.010   BCL2 binding component 3 isoform 1 
UNC84A                0.010   unc-84 homolog A isoform a 
MED25                 0.010   mediator complex subunit 25 
LOC100132345          0.008   PREDICTED: hypothetical protein 
HEG1                  0.008   HEG homolog 1 
BHMT2                 0.008   betaine-homocysteine methyltransferase 2 
TLE3                  0.008   transducin-like enhancer protein 3 isoform a 
C16orf42              0.008   hypothetical protein LOC115939 
TG                    0.008   thyroglobulin 
SIGMAR1               0.008   sigma non-opioid intracellular receptor 1 isoform 1 [...
DCTN1                 0.008   dynactin 1 isoform 2 
DCTN1                 0.008   dynactin 1 isoform 1 
FAM65B                0.008   hypothetical protein LOC9750 isoform 2 
FAM65B                0.008   hypothetical protein LOC9750 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press