Guide to the Human Genome
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Name: FAM65B Sequence: fasta or formatted (591aa) NCBI GI: 14277690
Description:

hypothetical protein LOC9750 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {1068aa} hypothetical protein LOC9750 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         41           3
 C cysteine            1.4          8           1
 D aspartate           4.9         29           2
 E glutamate          10.3         61           2
 F phenylalanine       4.1         24           2
 G glycine             6.8         40           2
 H histidine           1.7         10           1
 I isoleucine          4.1         24           2
 K lysine              7.4         44           2
 L leucine            10.5         62           3
 M methionine          2.5         15           1
 N asparagine          4.9         29           3
 P proline             4.7         28           2
 Q glutamine           4.2         25           1
 R arginine            4.7         28           2
 S serine              9.6         57           2
 T threonine           4.7         28           1
 V valine              3.9         23           2
 W tryptophan          0.5          3           1
 Y tyrosine            2.0         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC9750 isoform 2 
FAM65B                0.978   hypothetical protein LOC9750 isoform 1 
FAM65A                0.346   hypothetical protein LOC79567 
FAM65C                0.284   hypothetical protein LOC140876 
CCDC96                0.013   coiled-coil domain containing 96 
BANK1                 0.012   B-cell scaffold protein with ankyrin repeats 1 isof...
BANK1                 0.012   B-cell scaffold protein with ankyrin repeats 1 isof...
BANK1                 0.012   B-cell scaffold protein with ankyrin repeats 1 isof...
TOX                   0.011   thymus high mobility group box protein TOX 
SPHKAP                0.010   sphingosine kinase type 1-interacting protein isofo...
TMF1                  0.010   TATA element modulatory factor 1 
KIF5C                 0.010   kinesin family member 5C 
MYO10                 0.009   myosin X 
BAT2D1                0.009   HBxAg transactivated protein 2 
TPM4                  0.009   tropomyosin 4 isoform 1 
IFT74                 0.009   coiled-coil domain containing 2 isoform a 
IFT74                 0.009   coiled-coil domain containing 2 isoform a 
IFT74                 0.009   coiled-coil domain containing 2 isoform a 
RASSF8                0.009   Ras association (RalGDS/AF-6) domain family (N-termi...
DCTN1                 0.008   dynactin 1 isoform 4 
DCTN1                 0.008   dynactin 1 isoform 3 
DCTN1                 0.008   dynactin 1 isoform 2 
DCTN1                 0.008   dynactin 1 isoform 1 
CALCOCO2              0.008   calcium binding and coiled-coil domain 2 
LRRC16A               0.007   leucine rich repeat containing 16A 
SMC2                  0.007   structural maintenance of chromosomes 2 
SMC2                  0.007   structural maintenance of chromosomes 2 
SMC2                  0.007   structural maintenance of chromosomes 2 
REXO1                 0.007   transcription elongation factor B polypeptide 3 bin...
GPRIN1                0.007   G protein-regulated inducer of neurite outgrowth 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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