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Search of human proteins with 169217622
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169217622 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169217624 PREDICTED: hypothetical protein isoform 1 [Homo sap... 407 e-114
gi|169217622 PREDICTED: hypothetical protein isoform 2 [Homo sap... 407 e-114
gi|113420756 PREDICTED: hypothetical protein [Homo sapiens] 48 6e-06
gi|38569475 metaxin 1 isoform 1 [Homo sapiens] 34 0.083
gi|38569477 metaxin 1 isoform 2 [Homo sapiens] 34 0.083
gi|239755232 PREDICTED: hypothetical protein [Homo sapiens] 31 0.54
gi|239749768 PREDICTED: hypothetical protein [Homo sapiens] 31 0.54
gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo ... 31 0.54
gi|150170699 kinesin family member 26A [Homo sapiens] 31 0.70
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 30 0.92
gi|112821688 G protein-regulated inducer of neurite outgrowth 2 ... 30 0.92
gi|227430410 POU class 5 homeobox 1B [Homo sapiens] 30 1.2
gi|59709427 XK, Kell blood group complex subunit-related family,... 30 1.2
gi|169172087 PREDICTED: hypothetical protein [Homo sapiens] 30 1.6
gi|187960059 syndecan 3 [Homo sapiens] 29 2.0
gi|24308115 interferon regulatory factor 2 binding protein 1 [Ho... 29 2.0
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 29 2.7
gi|195972890 unc-84 homolog A isoform a [Homo sapiens] 29 2.7
gi|50428940 mediator complex subunit 25 [Homo sapiens] 29 2.7
gi|239741968 PREDICTED: hypothetical protein [Homo sapiens] 28 3.5
gi|153792110 HEG homolog 1 [Homo sapiens] 28 3.5
gi|13162290 betaine-homocysteine methyltransferase 2 [Homo sapiens] 28 4.6
gi|157384982 transducin-like enhancer protein 3 isoform a [Homo ... 28 4.6
gi|47777330 hypothetical protein LOC115939 [Homo sapiens] 28 4.6
gi|55770862 thyroglobulin [Homo sapiens] 28 5.9
gi|5032117 sigma non-opioid intracellular receptor 1 isoform 1 [... 28 5.9
gi|13259508 dynactin 1 isoform 2 [Homo sapiens] 28 5.9
gi|13259510 dynactin 1 isoform 1 [Homo sapiens] 28 5.9
gi|14277690 hypothetical protein LOC9750 isoform 2 [Homo sapiens] 28 5.9
gi|164414421 hypothetical protein LOC9750 isoform 1 [Homo sapiens] 28 5.9
>gi|169217624 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 186
Score = 407 bits (1045), Expect = e-114
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MVLPLFASFCLLDAVGPEICRVHRSIWWKPWHRACPRGQVWVSLVSSGLEFTRRWWQWET 60
MVLPLFASFCLLDAVGPEICRVHRSIWWKPWHRACPRGQVWVSLVSSGLEFTRRWWQWET
Sbjct: 1 MVLPLFASFCLLDAVGPEICRVHRSIWWKPWHRACPRGQVWVSLVSSGLEFTRRWWQWET 60
Query: 61 GCTGTDFFVAGEDNVLPPGKAAHGFWSRGLGWQLWDLLPQLRWLRRRLMNELNCLGSGER 120
GCTGTDFFVAGEDNVLPPGKAAHGFWSRGLGWQLWDLLPQLRWLRRRLMNELNCLGSGER
Sbjct: 61 GCTGTDFFVAGEDNVLPPGKAAHGFWSRGLGWQLWDLLPQLRWLRRRLMNELNCLGSGER 120
Query: 121 EDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEEVSSRHK 180
EDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEEVSSRHK
Sbjct: 121 EDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEEVSSRHK 180
Query: 181 SFSFFS 186
SFSFFS
Sbjct: 181 SFSFFS 186
>gi|169217622 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 186
Score = 407 bits (1045), Expect = e-114
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MVLPLFASFCLLDAVGPEICRVHRSIWWKPWHRACPRGQVWVSLVSSGLEFTRRWWQWET 60
MVLPLFASFCLLDAVGPEICRVHRSIWWKPWHRACPRGQVWVSLVSSGLEFTRRWWQWET
Sbjct: 1 MVLPLFASFCLLDAVGPEICRVHRSIWWKPWHRACPRGQVWVSLVSSGLEFTRRWWQWET 60
Query: 61 GCTGTDFFVAGEDNVLPPGKAAHGFWSRGLGWQLWDLLPQLRWLRRRLMNELNCLGSGER 120
GCTGTDFFVAGEDNVLPPGKAAHGFWSRGLGWQLWDLLPQLRWLRRRLMNELNCLGSGER
Sbjct: 61 GCTGTDFFVAGEDNVLPPGKAAHGFWSRGLGWQLWDLLPQLRWLRRRLMNELNCLGSGER 120
Query: 121 EDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEEVSSRHK 180
EDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEEVSSRHK
Sbjct: 121 EDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEEVSSRHK 180
Query: 181 SFSFFS 186
SFSFFS
Sbjct: 181 SFSFFS 186
>gi|113420756 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 47.8 bits (112), Expect = 6e-06
Identities = 30/58 (51%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 117 SGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEE 174
SGEREDT + R+PAPAPS + VGL RGGML PGG A AD EE
Sbjct: 8 SGEREDTRDLREPAPAPS------GLVPSRPGWVGLPRVGRGGMLLPGGAAVADLQEE 59
>gi|38569475 metaxin 1 isoform 1 [Homo sapiens]
Length = 466
Score = 33.9 bits (76), Expect = 0.083
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 103 WLRRR----------LMNELNCLGSGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGL 152
W RRR L + L G R +PE R P P S ++ +LA G+ G
Sbjct: 57 WTRRRDTPRRAGPTALSRYVGHLWMGRRPPSPEARGPVPRSSAASRARRSLASPGISPGP 116
Query: 153 QPGKRGGMLPPGG--IAAADPHEEV 175
GG + GG A+ H+EV
Sbjct: 117 LTATIGGAVAGGGPRQGRAEAHKEV 141
>gi|38569477 metaxin 1 isoform 2 [Homo sapiens]
Length = 435
Score = 33.9 bits (76), Expect = 0.083
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 103 WLRRR----------LMNELNCLGSGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGL 152
W RRR L + L G R +PE R P P S ++ +LA G+ G
Sbjct: 57 WTRRRDTPRRAGPTALSRYVGHLWMGRRPPSPEARGPVPRSSAASRARRSLASPGISPGP 116
Query: 153 QPGKRGGMLPPGG--IAAADPHEEV 175
GG + GG A+ H+EV
Sbjct: 117 LTATIGGAVAGGGPRQGRAEAHKEV 141
>gi|239755232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 31.2 bits (69), Expect = 0.54
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 94 LWDLLPQLRWL------RRRLMNELNCLGS---GEREDTPEGRKPAPAPSRSTTCCSALA 144
LW L P+ R RRR + + LG+ G +P G +P P T L
Sbjct: 389 LWPLQPRARRQGGSDRHRRRGQSGASGLGTAAAGAERTSPVGARPPPPARLVTNTAPTLG 448
Query: 145 GAG-LLVGLQPGKRGGMLPPGG 165
GAG L G RGG PP G
Sbjct: 449 GAGPRLEG-----RGGAAPPAG 465
>gi|239749768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 591
Score = 31.2 bits (69), Expect = 0.54
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 94 LWDLLPQLRWL------RRRLMNELNCLGS---GEREDTPEGRKPAPAPSRSTTCCSALA 144
LW L P+ R RRR + + LG+ G +P G +P P T L
Sbjct: 479 LWPLQPRARRQGGSDRHRRRGQSGASGLGTAAAGAERTSPVGARPPPPARLVTNTAPTLG 538
Query: 145 GAG-LLVGLQPGKRGGMLPPGG 165
GAG L G RGG PP G
Sbjct: 539 GAGPRLEG-----RGGAAPPAG 555
>gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo
sapiens]
Length = 591
Score = 31.2 bits (69), Expect = 0.54
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 94 LWDLLPQLRWL------RRRLMNELNCLGS---GEREDTPEGRKPAPAPSRSTTCCSALA 144
LW L P+ R RRR + + LG+ G +P G +P P T L
Sbjct: 479 LWPLQPRARRQGGSDRHRRRGQSGASGLGTAAAGAERTSPVGARPPPPARLVTNTAPTLG 538
Query: 145 GAG-LLVGLQPGKRGGMLPPGG 165
GAG L G RGG PP G
Sbjct: 539 GAGPRLEG-----RGGAAPPAG 555
>gi|150170699 kinesin family member 26A [Homo sapiens]
Length = 1882
Score = 30.8 bits (68), Expect = 0.70
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 101 LRWLRRRLMNELNCLGSGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGM 160
L+ L R M+ L S E D P G P+ AP +TT G G QPG+ G
Sbjct: 132 LQQLTREAMHLLQAPASHEDLDAPHGG-PSLAPPSTTTSSRDTPGPAGPAGRQPGRAGPD 190
Query: 161 LPPGGIAAADPHEEVS 176
G + P +VS
Sbjct: 191 RTKGLAWSPGPSVQVS 206
>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
Length = 379
Score = 30.4 bits (67), Expect = 0.92
Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 118 GEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEEVSS 177
G R P GR PAP R +T A A GL+P +RG AA P +E SS
Sbjct: 130 GVRSCAPPGRCPAPPHPRESTTSFASAPPRPAPGLEP-QRG--------PAASPPQEPSS 180
Query: 178 RHKS 181
R S
Sbjct: 181 RPPS 184
>gi|112821688 G protein-regulated inducer of neurite outgrowth 2
[Homo sapiens]
Length = 458
Score = 30.4 bits (67), Expect = 0.92
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 115 LGSGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGG---MLPPGGIAA 168
LG + +P A +TT C AL A LL G++ + GG LP GI A
Sbjct: 201 LGDTTAHSSSAQAEPKAAEQLATTTCHALPPAALLCGMREVRAGGCCHALPATGILA 257
>gi|227430410 POU class 5 homeobox 1B [Homo sapiens]
Length = 359
Score = 30.0 bits (66), Expect = 1.2
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 15/99 (15%)
Query: 77 PPGKAAHGFWSRGLGWQLWDLLPQLRWLRRRLMNELNCLGSGEREDTPE-GRKPAPAPSR 135
PPG G W GW + L WL + +G G + G P P P
Sbjct: 14 PPGGGGDGPWGAEPGW-----VDPLTWLSFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYE 68
Query: 136 STTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEE 174
C +A G VG+ G++P GG+ + P E
Sbjct: 69 ---LCGGMAYCGPQVGV------GLVPQGGLETSQPESE 98
>gi|59709427 XK, Kell blood group complex subunit-related family,
member 4 [Homo sapiens]
Length = 650
Score = 30.0 bits (66), Expect = 1.2
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 116 GSGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGG 165
GSG ++ G P + CC AG+G G G GG+ PGG
Sbjct: 41 GSGAEDEEAAGGGCCPDGGGCSRCCCCCAGSGGSAG--SGGSGGVAGPGG 88
>gi|169172087 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 29.6 bits (65), Expect = 1.6
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 124 PEGRKPAPAPS--RSTTCCSALAGAGLL-VGLQPGKRGGMLPP 163
P R+PAPAP + CC+ALAG + G G+ PP
Sbjct: 91 PAARRPAPAPRGPKQPGCCAALAGGDTNGEWILRGSTWGLCPP 133
>gi|187960059 syndecan 3 [Homo sapiens]
Length = 442
Score = 29.3 bits (64), Expect = 2.0
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 128 KPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPP 163
KP P P R+ A AGAG G PG RG +LPP
Sbjct: 2 KPGP-PHRAGAAHGAGAGAGAAAG--PGARGLLLPP 34
>gi|24308115 interferon regulatory factor 2 binding protein 1 [Homo
sapiens]
Length = 584
Score = 29.3 bits (64), Expect = 2.0
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 123 TPEGRKPAPAPSRSTTCCSALA-GAGLLVGLQPGKR-------GGMLPPGGIAAA 169
T GR P P+P+ T S LA G G + G R G++PPG +AAA
Sbjct: 116 TSSGRLPLPSPALEYTLGSRLANGLGREEAVAEGARRALLGSMPGLMPPGLLAAA 170
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 28.9 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 128 KPAPAPSRSTTCCSALAGA---GLLVGLQPGKRGGMLPPGG 165
+PAP P+ + ALAG G+ +PG GG PGG
Sbjct: 117 QPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGG 157
>gi|195972890 unc-84 homolog A isoform a [Homo sapiens]
Length = 785
Score = 28.9 bits (63), Expect = 2.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 75 VLPPGKAAHG-FWSRGLGWQLWDLLPQLRWL 104
V+ PGKAA G FW G+GW + + + WL
Sbjct: 249 VVAPGKAASGVFWWLGIGW--YQFVTLISWL 277
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 28.9 bits (63), Expect = 2.7
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 129 PAPAPSRSTTCCSALA-GAGLLVGLQPG--KRGGMLPPGGIAAADP 171
P P P+ + S +A G+GL QPG G + PGG++ P
Sbjct: 336 PKPPPASQPSLVSTVAPGSGLAPTAQPGAPSMAGTVAPGGVSGPSP 381
>gi|239741968 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 28.5 bits (62), Expect = 3.5
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 117 SGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAADPHEEVS 176
+G+ T +P+P+ R CC+ L G+ L +PG GG G A H V
Sbjct: 194 AGDTRRTEARAEPSPSRRRRRRCCAPLPGS--LPARRPG-CGGRRAGGARAGQGAHTGVG 250
Query: 177 SRHKSFS 183
+ ++ S
Sbjct: 251 AEDRTLS 257
>gi|153792110 HEG homolog 1 [Homo sapiens]
Length = 1381
Score = 28.5 bits (62), Expect = 3.5
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 11/52 (21%)
Query: 124 PEGRKPAPAPSRSTTCCSALAGAGLLVGLQ-----------PGKRGGMLPPG 164
P R P P+P+R + LAGAGL + L+ P +R G PG
Sbjct: 28 PGTRDPPPSPARRALSLAPLAGAGLELQLERRPEREPPPTPPRERRGPATPG 79
>gi|13162290 betaine-homocysteine methyltransferase 2 [Homo sapiens]
Length = 363
Score = 28.1 bits (61), Expect = 4.6
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 69 VAGEDNVLPPGKAAHGFWSRGLGWQLWDLLPQLRWLRRRLMNEL--NCLGSGEREDTPEG 126
+A E LPP HG W GL + W+R R E N L + R P
Sbjct: 305 LAPERGFLPPASEKHGSWGSGLD------MHTKPWIRARARREYWENLLPASGRPFCPSL 358
Query: 127 RKP 129
KP
Sbjct: 359 SKP 361
>gi|157384982 transducin-like enhancer protein 3 isoform a [Homo
sapiens]
Length = 772
Score = 28.1 bits (61), Expect = 4.6
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 118 GEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIAAA 169
G + +TP R AP P STT GL PGK GM P G +A+A
Sbjct: 314 GLKSNTPTPRNDAPTPGTSTT-------PGL--RSMPGKPPGMDPIGIMASA 356
>gi|47777330 hypothetical protein LOC115939 [Homo sapiens]
Length = 312
Score = 28.1 bits (61), Expect = 4.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 125 EGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKRGGMLPPGGIA 167
EG +P P+RS + GA L ++PG G PG A
Sbjct: 13 EGGRPRHLPTRSLEAFAEEVGAALQASVEPGAADGEGGPGPAA 55
>gi|55770862 thyroglobulin [Homo sapiens]
Length = 2768
Score = 27.7 bits (60), Expect = 5.9
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 16 GPEICRVHRSIWWK--PWHRACPRGQVWVSLVSSG 48
GP IC + W P RAC R Q+W ++ + G
Sbjct: 1260 GPLICSLESGRWESQLPQPRACQRPQLWQTIQTQG 1294
>gi|5032117 sigma non-opioid intracellular receptor 1 isoform 1
[Homo sapiens]
Length = 223
Score = 27.7 bits (60), Expect = 5.9
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 38 GQVWVSLVSSGLEFTRRWWQWETGCTGTDFFVAGEDNVLPPGKAAHGFW 86
G+ W + + + T + QW G T ++ F GE V PG+A W
Sbjct: 118 GRYWAEISDTIISGT--FHQWREGTTKSEVFYPGETVVHGPGEATAVEW 164
>gi|13259508 dynactin 1 isoform 2 [Homo sapiens]
Length = 1144
Score = 27.7 bits (60), Expect = 5.9
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 98 LPQLRWLRRRLMNELNCLGSGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKR 157
+ QL + L LN + + T EG + P PS T S +AG G PG+
Sbjct: 889 IDQLEAEKAELKQRLN----SQSKRTIEGLR-GPPPSGIATLVSGIAGEEQQRGAIPGQA 943
Query: 158 GGMLPPGGIAAADP 171
G +P G+ P
Sbjct: 944 PGSVPGPGLVKDSP 957
>gi|13259510 dynactin 1 isoform 1 [Homo sapiens]
Length = 1278
Score = 27.7 bits (60), Expect = 5.9
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 98 LPQLRWLRRRLMNELNCLGSGEREDTPEGRKPAPAPSRSTTCCSALAGAGLLVGLQPGKR 157
+ QL + L LN + + T EG + P PS T S +AG G PG+
Sbjct: 1023 IDQLEAEKAELKQRLN----SQSKRTIEGLR-GPPPSGIATLVSGIAGEEQQRGAIPGQA 1077
Query: 158 GGMLPPGGIAAADP 171
G +P G+ P
Sbjct: 1078 PGSVPGPGLVKDSP 1091
>gi|14277690 hypothetical protein LOC9750 isoform 2 [Homo sapiens]
Length = 591
Score = 27.7 bits (60), Expect = 5.9
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 113 NCLGSGER-------EDTPEGRKPAPAPSRSTTCCSALAGA 146
N LG G+ ED E RKPA APS + S+ AGA
Sbjct: 438 NSLGEGQEPKSHLKEEDPEEPRKPASAPSEACRRQSSGAGA 478
>gi|164414421 hypothetical protein LOC9750 isoform 1 [Homo sapiens]
Length = 1068
Score = 27.7 bits (60), Expect = 5.9
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 113 NCLGSGER-------EDTPEGRKPAPAPSRSTTCCSALAGA 146
N LG G+ ED E RKPA APS + S+ AGA
Sbjct: 488 NSLGEGQEPKSHLKEEDPEEPRKPASAPSEACRRQSSGAGA 528
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.496
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,549,816
Number of Sequences: 37866
Number of extensions: 517235
Number of successful extensions: 1620
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1605
Number of HSP's gapped (non-prelim): 34
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.