Guide to the Human Genome
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Name: TNIP3 Sequence: fasta or formatted (325aa) NCBI GI: 192807305
Description:

TNFAIP3 interacting protein 3

Not currently referenced in the text

Other entries for this name:
alt mRNA {325aa} TNFAIP3 interacting protein 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         14           2
 C cysteine            3.1         10           1
 D aspartate           5.2         17           2
 E glutamate          13.8         45           2
 F phenylalanine       2.2          7           1
 G glycine             1.8          6           1
 H histidine           3.1         10           1
 I isoleucine          2.2          7           1
 K lysine             11.1         36           2
 L leucine            10.2         33           2
 M methionine          2.5          8           1
 N asparagine          4.6         15           1
 P proline             3.7         12           2
 Q glutamine           9.5         31           2
 R arginine            8.3         27           1
 S serine              4.9         16           2
 T threonine           3.1         10           1
 V valine              3.7         12           1
 W tryptophan          0.9          3           1
 Y tyrosine            1.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TNFAIP3 interacting protein 3 
TNIP3                 1.000   TNFAIP3 interacting protein 3 
TNIP1                 0.232   TNFAIP3 interacting protein 1 
CCDC88A               0.072   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.072   coiled-coil domain containing 88A isoform 1 
LOC645202             0.070   PREDICTED: hypothetical protein LOC645202 
LOC440243             0.069   PREDICTED: Putative golgin subfamily A member 6-lik...
TCHH                  0.069   trichohyalin 
LOC283767             0.066   golgi autoantigen, golgin subfamily a-like 
LOC400352             0.064   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.064   PREDICTED: similar to Putative golgin subfamily A m...
LOC727832             0.063   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.061   PREDICTED: golgi autoantigen, golgin subfamily a-li...
ITSN1                 0.058   intersectin 1 isoform ITSN-s 
ITSN1                 0.058   intersectin 1 isoform ITSN-l 
CENPF                 0.058   centromere protein F 
NIN                   0.058   ninein isoform 4 
NIN                   0.058   ninein isoform 5 
NIN                   0.058   ninein isoform 1 
NIN                   0.058   ninein isoform 2 
ITSN2                 0.058   intersectin 2 isoform 3 
ITSN2                 0.058   intersectin 2 isoform 1 
ITSN2                 0.058   intersectin 2 isoform 2 
DEF6                  0.056   differentially expressed in FDCP 6 homolog 
CEP55                 0.055   centrosomal protein 55kDa 
CEP55                 0.055   centrosomal protein 55kDa 
LOC283685             0.055   PREDICTED: golgi autoantigen, golgin subfamily a-li...
EPS15                 0.053   epidermal growth factor receptor pathway substrate 15...
MYH10                 0.053   myosin, heavy polypeptide 10, non-muscle 
CALD1                 0.053   caldesmon 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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