Guide to the Human Genome
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Name: LOC100129700 Sequence: fasta or formatted (476aa) NCBI GI: 169216384
Description:

PREDICTED: similar to hCG1805148

Not currently referenced in the text

Other entries for this name:
alt mRNA {476aa} PREDICTED: similar to hCG1805148
alt prot {393aa} PREDICTED: similar to hCG1805148
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         46           2
 C cysteine            2.7         13           1
 D aspartate           4.2         20           1
 E glutamate          14.1         67           4
 F phenylalanine       3.2         15           2
 G glycine             8.4         40           2
 H histidine           1.9          9           1
 I isoleucine          3.6         17           2
 K lysine              5.7         27           2
 L leucine             6.1         29           2
 M methionine          0.4          2           1
 N asparagine          2.5         12           1
 P proline             4.8         23           2
 Q glutamine           4.6         22           2
 R arginine            4.6         22           2
 S serine              8.0         38           2
 T threonine           4.4         21           1
 V valine              6.7         32           2
 W tryptophan          1.7          8           1
 Y tyrosine            2.7         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1805148 
LOC100129700          1.000   PREDICTED: similar to hCG1805148 
LOC100129700          0.298   PREDICTED: similar to hCG1805148 
NAP1L1                0.051   nucleosome assembly protein 1-like 1 
NAP1L1                0.051   nucleosome assembly protein 1-like 1 
NAP1L4                0.043   nucleosome assembly protein 1-like 4 
NAP1L2                0.030   nucleosome assembly protein 1-like 2 
RPGR                  0.023   retinitis pigmentosa GTPase regulator isoform C [Hom...
C1orf173              0.019   hypothetical protein LOC127254 
CCDC88B               0.017   coiled-coil domain containing 88 
TTBK1                 0.016   tau tubulin kinase 1 
DCAF8L2               0.016   DDB1 and CUL4 associated factor 8-like 2 
LOC727838             0.015   PREDICTED: similar to cancer/testis antigen family ...
APOB48R               0.015   apolipoprotein B48 receptor 
ANP32A                0.015   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
CEP164                0.015   centrosomal protein 164kDa 
ZBTB17                0.015   zinc finger and BTB domain containing 17 
FAM9A                 0.015   family with sequence similarity 9, member A 
BCL11A                0.014   B-cell CLL/lymphoma 11A isoform 1 
BCL11A                0.014   B-cell CLL/lymphoma 11A isoform 2 
PELP1                 0.014   proline, glutamic acid and leucine rich protein 1 [...
ANP32E                0.014   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ANP32E                0.014   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32E                0.014   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
LOC727838             0.013   PREDICTED: similar to cancer/testis antigen family ...
LOC727838             0.013   PREDICTED: similar to cancer/testis antigen family ...
MYST4                 0.013   MYST histone acetyltransferase (monocytic leukemia)...
SRCAP                 0.013   Snf2-related CBP activator protein 
NEFL                  0.013   neurofilament, light polypeptide 68kDa 
LOC645490             0.012   PREDICTED: similar to hCG1991922 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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