Guide to the Human Genome
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Name: LOC100129700 Sequence: fasta or formatted (393aa) NCBI GI: 239757872
Description:

PREDICTED: similar to hCG1805148

Not currently referenced in the text

Other entries for this name:
alt prot {476aa} PREDICTED: similar to hCG1805148
alt prot {476aa} PREDICTED: similar to hCG1805148
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         28           2
 C cysteine            2.5         10           2
 D aspartate           4.3         17           2
 E glutamate          14.5         57           2
 F phenylalanine       3.8         15           2
 G glycine             8.1         32           2
 H histidine           1.0          4           1
 I isoleucine          3.8         15           2
 K lysine              5.9         23           2
 L leucine             7.6         30           1
 M methionine          1.0          4           1
 N asparagine          2.3          9           1
 P proline             4.6         18           1
 Q glutamine           4.6         18           2
 R arginine            4.8         19           2
 S serine              8.1         32           2
 T threonine           4.3         17           1
 V valine              6.4         25           2
 W tryptophan          1.3          5           1
 X unknown             0.3          1           1
 Y tyrosine            3.6         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1805148 
LOC100129700          0.366   PREDICTED: similar to hCG1805148 
LOC100129700          0.366   PREDICTED: similar to hCG1805148 
NAP1L1                0.217   nucleosome assembly protein 1-like 1 
NAP1L1                0.217   nucleosome assembly protein 1-like 1 
NAP1L4                0.173   nucleosome assembly protein 1-like 4 
NAP1L2                0.060   nucleosome assembly protein 1-like 2 
NAP1L3                0.046   nucleosome assembly protein 1-like 3 
SET                   0.030   SET translocation (myeloid leukemia-associated) iso...
SET                   0.027   SET translocation (myeloid leukemia-associated) iso...
LOC646817             0.025   PREDICTED: similar to SET translocation 
LOC646817             0.025   PREDICTED: similar to SET translocation 
LOC646817             0.025   PREDICTED: similar to SET translocation 
LOC389217             0.025   PREDICTED: similar to SET translocation 
LOC389217             0.025   PREDICTED: similar to SET translocation 
LOC389217             0.025   PREDICTED: similar to SET translocation 
DCAF8L2               0.020   DDB1 and CUL4 associated factor 8-like 2 
LOC727838             0.018   PREDICTED: similar to cancer/testis antigen family ...
RPGR                  0.018   retinitis pigmentosa GTPase regulator isoform C [Hom...
NAP1L5                0.018   nucleosome assembly protein 1-like 5 
LOC727838             0.016   PREDICTED: similar to cancer/testis antigen family ...
LOC727838             0.016   PREDICTED: similar to cancer/testis antigen family ...
MYST4                 0.016   MYST histone acetyltransferase (monocytic leukemia)...
LOC645490             0.014   PREDICTED: similar to hCG1991922 
MYT1                  0.014   myelin transcription factor 1 
LOC645490             0.013   PREDICTED: similar to hCG1991922 
LOC645490             0.013   PREDICTED: similar to hCG1991922 
EHMT2                 0.013   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.013   euchromatic histone-lysine N-methyltransferase 2 is...
ACRBP                 0.013   proacrosin binding protein sp32 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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