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Search of human proteins with 169216064
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169216064 PREDICTED: hypothetical protein [Homo sapiens]
(129 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169216064 PREDICTED: hypothetical protein [Homo sapiens] 259 5e-70
gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo... 33 0.081
gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens] 30 0.40
gi|239754516 PREDICTED: hypothetical protein [Homo sapiens] 30 0.40
gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo ... 30 0.40
gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo ... 30 0.40
gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo ... 30 0.40
gi|239508758 PREDICTED: hypothetical protein [Homo sapiens] 30 0.40
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 30 0.40
gi|110815834 F-box and WD-40 domain protein 10 [Homo sapiens] 30 0.40
gi|239754505 PREDICTED: hypothetical protein XP_002346016 [Homo ... 30 0.69
gi|239749065 PREDICTED: hypothetical protein XP_002346903 [Homo ... 30 0.69
gi|239508743 PREDICTED: hypothetical protein [Homo sapiens] 30 0.69
gi|186700629 calcium/calmodulin-dependent serine protein kinase ... 30 0.69
gi|186700627 calcium/calmodulin-dependent serine protein kinase ... 30 0.69
gi|186972120 calcium/calmodulin-dependent serine protein kinase ... 30 0.69
gi|145312265 endoplasmic reticulum to nucleus signalling 2 [Homo... 29 0.90
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 29 1.2
gi|24308227 zinc finger protein 687 [Homo sapiens] 29 1.2
gi|239748009 PREDICTED: hypothetical protein XP_002346492 [Homo ... 28 1.5
gi|167555110 kinesin family member C1 [Homo sapiens] 28 2.0
gi|190014615 hypothetical protein LOC157983 [Homo sapiens] 28 2.0
gi|22027554 voltage-dependent calcium channel gamma-6 subunit is... 28 2.6
gi|22027560 voltage-dependent calcium channel gamma-6 subunit is... 28 2.6
gi|22027557 voltage-dependent calcium channel gamma-6 subunit is... 28 2.6
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 27 4.5
gi|63053512 keratin associated protein 10-1 [Homo sapiens] 27 4.5
gi|154124881 kinesin family member 25 isoform 2 [Homo sapiens] 27 5.8
gi|154124879 kinesin family member 25 isoform 1 [Homo sapiens] 27 5.8
gi|109150422 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-l... 27 5.8
>gi|169216064 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 259 bits (661), Expect = 5e-70
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MTLRLSDWLGSLSLAERTVAGVAARGRSGRRRSLGRELAPGTPSDCGVSLSVLLSGCPPR 60
MTLRLSDWLGSLSLAERTVAGVAARGRSGRRRSLGRELAPGTPSDCGVSLSVLLSGCPPR
Sbjct: 1 MTLRLSDWLGSLSLAERTVAGVAARGRSGRRRSLGRELAPGTPSDCGVSLSVLLSGCPPR 60
Query: 61 SLVVSVGAQALKNLLVAGPRAQERCQRAGASPEPREEGCNGSPIVDRDIRIPSPGSLKTS 120
SLVVSVGAQALKNLLVAGPRAQERCQRAGASPEPREEGCNGSPIVDRDIRIPSPGSLKTS
Sbjct: 61 SLVVSVGAQALKNLLVAGPRAQERCQRAGASPEPREEGCNGSPIVDRDIRIPSPGSLKTS 120
Query: 121 PEFGSWKEL 129
PEFGSWKEL
Sbjct: 121 PEFGSWKEL 129
>gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo
sapiens]
Length = 623
Score = 32.7 bits (73), Expect = 0.081
Identities = 31/88 (35%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 26 GRSGRRRSLGRELAPGTPSDCGVSLSVLLSG--CPPRSLVVSVGAQALKNLLVAGPRAQE 83
G +G S G TP G SL SG PP+SL + A GPR E
Sbjct: 17 GAAGESESEGAASPAQTPCSLGASLC-FSSGEESPPQSLASAAEGAATSPPSSGGPRVVE 75
Query: 84 RCQRAG----ASPE----PREEGCNGSP 103
R AG ASPE P E C P
Sbjct: 76 RQWEAGSAGAASPEELASPEERACPEEP 103
>gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]
Length = 2526
Score = 30.4 bits (67), Expect = 0.40
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 24 ARGRSGRRRSLGRELAPGTPSDCGVSLSVLLSGCPPRSLVVSVGAQALKNLLVAGPRAQE 83
++G G R G + PG D G ++GCP + G + LK +GP+
Sbjct: 1411 SQGLKGSRGHRGEDGNPGVRGDTGPQGDKGIAGCPG-----AWGQKGLKGF--SGPKGGH 1463
Query: 84 RCQRAGASPEPREEGCNGSPIVDRDIRIP----SPGSLKTSPEFG 124
G EEGC+G P + + P SPGS ++G
Sbjct: 1464 GDD--GIDGLDGEEGCHGFPGIKGEKGDPGSQGSPGSRGAPGQYG 1506
Score = 26.2 bits (56), Expect = 7.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 22 VAARGRSGRRRSLGRELAPGTPSDCG 47
+ A+G +GR LG++ PG P D G
Sbjct: 1614 MGAKGSTGRPGLLGKKGEPGLPGDLG 1639
>gi|239754516 PREDICTED: hypothetical protein [Homo sapiens]
Length = 334
Score = 30.4 bits (67), Expect = 0.40
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 20 AGVAAR--GRSGRRRSLGRELAPGTPSD 45
AGV R + G RR LGRE APG P++
Sbjct: 20 AGVTCRVSSQDGDRRGLGREAAPGAPAE 47
>gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo
sapiens]
Length = 334
Score = 30.4 bits (67), Expect = 0.40
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 20 AGVAAR--GRSGRRRSLGRELAPGTPSD 45
AGV R + G RR LGRE APG P++
Sbjct: 20 AGVTCRVSSQDGDRRGLGREAAPGAPAE 47
>gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo
sapiens]
Length = 326
Score = 30.4 bits (67), Expect = 0.40
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 14 LAERTVAGVAARGRSGRRRSLGRELAPGTPSDCGVSLSVLLSGCPPRSLVVSVGAQALKN 73
+A ++ A GR+GR R + SL +L S PP A K
Sbjct: 152 VARASLGDKAGAGRAGRGRPAQSPAEADAAARASKSLKLLSSALPPHL------RPAAKT 205
Query: 74 LLVAGPRAQE---RCQRAGASPEPREEGCNGSPIVDRDIRIPSP---GSLKTSP 121
VAGP A+E + G P P + + +P R+P P G+L+ P
Sbjct: 206 RAVAGPTAKESPPALRTVGDGPRPGPKRPDPAP-----SRLPPPPHAGALRGPP 254
>gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo
sapiens]
Length = 329
Score = 30.4 bits (67), Expect = 0.40
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 20 AGVAAR--GRSGRRRSLGRELAPGTPSD 45
AGV R + G RR LGRE APG P++
Sbjct: 15 AGVTCRVSSQDGDRRGLGREAAPGAPAE 42
>gi|239508758 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 30.4 bits (67), Expect = 0.40
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 20 AGVAAR--GRSGRRRSLGRELAPGTPSD 45
AGV R + G RR LGRE APG P++
Sbjct: 15 AGVTCRVSSQDGDRRGLGREAAPGAPAE 42
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 30.4 bits (67), Expect = 0.40
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
Query: 24 ARGRSGRRRSLGRELAPGTPSDCGVSLSVLLSGCPPRSLVVSVGAQALKNLL-------- 75
A G+ G R S G +PG P G +G P +++V GA+ K
Sbjct: 2264 ASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLV 2323
Query: 76 ----------VAGPRAQE-RCQRAGASPEPREEGCNGSP 103
+ GPR ++ RAG +P E+G G+P
Sbjct: 2324 GEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAP 2362
Score = 26.6 bits (57), Expect = 5.8
Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 21/82 (25%)
Query: 22 VAARGRSGRRRSLGRELAPGTPSDCGVSLSVLLSGCPPRSLVVSVGAQALKNLLVAGPRA 81
V RGR G G E PG P G + L G P V GP
Sbjct: 1627 VGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPG----------------VRGPVG 1670
Query: 82 QERCQRAGASPEPREEGCNGSP 103
++ G +P E+G NGSP
Sbjct: 1671 EK-----GDQGDPGEDGRNGSP 1687
>gi|110815834 F-box and WD-40 domain protein 10 [Homo sapiens]
Length = 1051
Score = 30.4 bits (67), Expect = 0.40
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 53 LLSGCPPRSLVVSVGAQALKNLLVAGPRAQERCQRAGASPEPREEGCNGSPIVDRDIRIP 112
LL G PP+S V+ A+ +L+ E Q G S PR + + + ++
Sbjct: 740 LLPGKPPKSRVLLKPAKFSSAVLI------EELQSQGKSKSPRRD--DDVEKAQKQGQLE 791
Query: 113 SPGSLKTSPEFGSWK 127
+PG L + P+ SWK
Sbjct: 792 TPGKLPSHPKKKSWK 806
>gi|239754505 PREDICTED: hypothetical protein XP_002346016 [Homo
sapiens]
Length = 128
Score = 29.6 bits (65), Expect = 0.69
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 15 AERTVAGVAARGRSGRRRSLGRELAPGTPSDCG 47
A R + GV++R RRR LGRE P T ++ G
Sbjct: 15 ASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVG 47
>gi|239749065 PREDICTED: hypothetical protein XP_002346903 [Homo
sapiens]
Length = 128
Score = 29.6 bits (65), Expect = 0.69
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 15 AERTVAGVAARGRSGRRRSLGRELAPGTPSDCG 47
A R + GV++R RRR LGRE P T ++ G
Sbjct: 15 ASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVG 47
>gi|239508743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 128
Score = 29.6 bits (65), Expect = 0.69
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 15 AERTVAGVAARGRSGRRRSLGRELAPGTPSDCG 47
A R + GV++R RRR LGRE P T ++ G
Sbjct: 15 ASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVG 47
>gi|186700629 calcium/calmodulin-dependent serine protein kinase
isoform 3 [Homo sapiens]
Length = 897
Score = 29.6 bits (65), Expect = 0.69
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 20 AGVAARGRSGRRRSLGRELAP----GTPSD---CGVSLSVLLSGCPP 59
+G+ A GR G + E+ G P D CGV L +LLSGC P
Sbjct: 172 SGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLP 218
>gi|186700627 calcium/calmodulin-dependent serine protein kinase
isoform 2 [Homo sapiens]
Length = 898
Score = 29.6 bits (65), Expect = 0.69
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 20 AGVAARGRSGRRRSLGRELAP----GTPSD---CGVSLSVLLSGCPP 59
+G+ A GR G + E+ G P D CGV L +LLSGC P
Sbjct: 172 SGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLP 218
>gi|186972120 calcium/calmodulin-dependent serine protein kinase
isoform 1 [Homo sapiens]
Length = 921
Score = 29.6 bits (65), Expect = 0.69
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 20 AGVAARGRSGRRRSLGRELAP----GTPSD---CGVSLSVLLSGCPP 59
+G+ A GR G + E+ G P D CGV L +LLSGC P
Sbjct: 172 SGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLP 218
>gi|145312265 endoplasmic reticulum to nucleus signalling 2 [Homo
sapiens]
Length = 974
Score = 29.3 bits (64), Expect = 0.90
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 26 GRSGRRRSLGRELAPGTPSDCGVSLSVLLSGCPP 59
GR+G RSLG PG P C +++ + G P
Sbjct: 25 GRAGTERSLGGTQGPGQPCSCPGAMASAVRGSRP 58
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 28.9 bits (63), Expect = 1.2
Identities = 28/81 (34%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 24 ARGRSGRRRSLGRELAPGTPSDCGVSLSVLLSG-CPPRSLVVSVGAQALKNLLVAGPRAQ 82
ARG G R S G+ PG P G S G P S GA + GP+
Sbjct: 319 ARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRG--EPGPQG- 375
Query: 83 ERCQRAGASPEPREEGCNGSP 103
AGA P G NGSP
Sbjct: 376 ----HAGAQGPPGPPGINGSP 392
>gi|24308227 zinc finger protein 687 [Homo sapiens]
Length = 1237
Score = 28.9 bits (63), Expect = 1.2
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 23/121 (19%)
Query: 13 SLAERTVAGVAARGRSGRRRSLGRELAPGTPSDCGVSLSVLLSGCPPRSLVVSVG----- 67
S +E T A A G ++ L P P VS+ V + CP +S ++ G
Sbjct: 49 SESEDTAAASAGDGPGVPAQASDHGLPP--PDISVVSVIVKNTVCPEQSEALAGGSAGDG 106
Query: 68 AQALKNLLVAGPRAQERCQRAGASPEPREEGCNGSPIVDRDIRIPSPGSLKTSPEFGSWK 127
AQA + GP R Q SPEP G SP P G+WK
Sbjct: 107 AQAA-GVTKEGPVGPHRMQNGFGSPEPSLPGTPHSP---------------APPSGGTWK 150
Query: 128 E 128
E
Sbjct: 151 E 151
>gi|239748009 PREDICTED: hypothetical protein XP_002346492 [Homo
sapiens]
Length = 244
Score = 28.5 bits (62), Expect = 1.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 83 ERCQRAGASPEPREEG--CNGSPIVDRDIRIPSPGSLKTSP-------EFGSWKE 128
++C R P P +E G P DRD + +PG+ KT +G W++
Sbjct: 126 QKCSRNQGHPNPCKEANYAQGKPEQDRDPALQAPGTEKTRTLPSGLLWGYGKWQQ 180
>gi|167555110 kinesin family member C1 [Homo sapiens]
Length = 673
Score = 28.1 bits (61), Expect = 2.0
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 7 DWLGSLSLAERTVAGVAARGRSGRRRSLGRELAPGTPSDCGVSLSVLLSGCPPRSLVVSV 66
D L L+ R VA A RS R S+ + G S G+ P SLV
Sbjct: 514 DALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRGLQCGA------PLSLVDLA 567
Query: 67 GAQALKNLLVAGPRAQERCQRAGA 90
G++ L L GP +ER + A
Sbjct: 568 GSERLDPGLALGPGERERLRETQA 591
>gi|190014615 hypothetical protein LOC157983 [Homo sapiens]
Length = 295
Score = 28.1 bits (61), Expect = 2.0
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 40 PGTPSDCGVSLSVLLSGCPPRSLVVSVGAQALKNLLVAGPRAQERCQRAGASPEPREEGC 99
P T + ++ G PR L S + L L AGP A + A P+PRE G
Sbjct: 21 PATCKNLEGGAGEVVRGRDPRRLRTSRSTEILGEDL-AGPSAGAAARPAAPPPQPREPGA 79
Query: 100 NGSPIVDRDIRIPSPG 115
G R+ S G
Sbjct: 80 PGLRRAPPRTRMDSSG 95
>gi|22027554 voltage-dependent calcium channel gamma-6 subunit
isoform a [Homo sapiens]
Length = 260
Score = 27.7 bits (60), Expect = 2.6
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 25 RGRSGRRRSLGRELAPGTPSDCG-VSLSVLLSGCPPRSLVVSVGAQ 69
RG +GRRR+ G+ + TP G V L++LL+ V+SVG +
Sbjct: 15 RGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 60
>gi|22027560 voltage-dependent calcium channel gamma-6 subunit
isoform c [Homo sapiens]
Length = 189
Score = 27.7 bits (60), Expect = 2.6
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 25 RGRSGRRRSLGRELAPGTPSDCG-VSLSVLLSGCPPRSLVVSVGAQ 69
RG +GRRR+ G+ + TP G V L++LL+ V+SVG +
Sbjct: 15 RGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 60
>gi|22027557 voltage-dependent calcium channel gamma-6 subunit
isoform b [Homo sapiens]
Length = 214
Score = 27.7 bits (60), Expect = 2.6
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 25 RGRSGRRRSLGRELAPGTPSDCG-VSLSVLLSGCPPRSLVVSVGAQ 69
RG +GRRR+ G+ + TP G V L++LL+ V+SVG +
Sbjct: 15 RGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 60
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 26.9 bits (58), Expect = 4.5
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 33 SLGRELAPGT------PSDCGVSLSVLLSGCPPRSLVVSVGAQALKNLLVAGPRAQER 84
SLGR AP T PS SLS LL G PP + +Q L A + +R
Sbjct: 197 SLGRPWAPLTGPSVPPPSSGRASLSSLLGGAPPWGSLQDPDSQGLSPAAAAPSQQLQR 254
>gi|63053512 keratin associated protein 10-1 [Homo sapiens]
Length = 282
Score = 26.9 bits (58), Expect = 4.5
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 55 SGCPPRSLVVSVGAQALKNLLVAGP--RAQERCQRAGASPEPREEGCNGS 102
S C P +S A A LV P R C +A P P + GC S
Sbjct: 25 SCCEPHCCALSCCAPAPCLTLVCTPVSRVSSPCCQAACEPSPCQSGCTSS 74
>gi|154124881 kinesin family member 25 isoform 2 [Homo sapiens]
Length = 332
Score = 26.6 bits (57), Expect = 5.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 16 ERTVAGVAARGRSGRRRSLGRELAPGTPS 44
E+T AG A R R + +L +L PG P+
Sbjct: 227 EQTEAGRAGRSRRASQGALAPQLVPGNPA 255
>gi|154124879 kinesin family member 25 isoform 1 [Homo sapiens]
Length = 384
Score = 26.6 bits (57), Expect = 5.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 16 ERTVAGVAARGRSGRRRSLGRELAPGTPS 44
E+T AG A R R + +L +L PG P+
Sbjct: 227 EQTEAGRAGRSRRASQGALAPQLVPGNPA 255
>gi|109150422 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like
1 isoform b [Homo sapiens]
Length = 340
Score = 26.6 bits (57), Expect = 5.8
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 10 GSLSLAERTVAGVAARGRSGRRRSLGRELAPGTPSDCGVSLSVLLSGCPPRSLVV---SV 66
GS++ + T G SLG + GTP L ++ PP +L V
Sbjct: 193 GSITPQKVTEVSKRLYGMGCYEISLGDTIGVGTPGSMKRMLESVMKEIPPGALAVHCHDT 252
Query: 67 GAQALKNLLVA 77
QAL N+L A
Sbjct: 253 YGQALANILTA 263
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,963,097
Number of Sequences: 37866
Number of extensions: 291091
Number of successful extensions: 781
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 63
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.