Guide to the Human Genome
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Name: LOC100290437 Sequence: fasta or formatted (244aa) NCBI GI: 239748009
Description:

PREDICTED: hypothetical protein XP_002346492

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         19           3
 C cysteine            1.2          3           1
 D aspartate           4.9         12           2
 E glutamate           4.9         12           2
 F phenylalanine       4.5         11           1
 G glycine             9.8         24           2
 H histidine           1.2          3           1
 I isoleucine          2.9          7           1
 K lysine              8.2         20           1
 L leucine            11.1         27           3
 M methionine          2.0          5           1
 N asparagine          2.5          6           2
 P proline             6.1         15           2
 Q glutamine           5.3         13           2
 R arginine            5.7         14           1
 S serine              7.4         18           2
 T threonine           6.1         15           3
 V valine              4.9         12           2
 W tryptophan          0.8          2           1
 Y tyrosine            2.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346492 
LOC100292829          0.369   PREDICTED: similar to heat shock 10kDa protein 1 [H...
LOC100287159          0.369   PREDICTED: hypothetical protein XP_002342349 
HSPE1                 0.300   heat shock 10kDa protein 1 
LOC100132346          0.281   PREDICTED: similar to heat shock 10 kDa protein 1 [...
LOC100292290          0.251   PREDICTED: similar to heat shock 10kDa protein 1 [H...
PPP1R1B               0.013   protein phosphatase 1, regulatory (inhibitor) subuni...
PPP1R1B               0.013   protein phosphatase 1, regulatory (inhibitor) subuni...
POLS                  0.013   DNA polymerase sigma 
BACH1                 0.011   BTB and CNC homology 1 transcription factor isoform ...
BACH1                 0.011   BTB and CNC homology 1 transcription factor isoform a...
LOC728846             0.009   PREDICTED: hypothetical protein 
ADAMTS10              0.009   ADAM metallopeptidase with thrombospondin type 1 mot...
MBNL1                 0.009   muscleblind-like 1 isoform c 
MEF2C                 0.006   myocyte enhancer factor 2C isoform 2 
MEF2C                 0.006   myocyte enhancer factor 2C isoform 1 
LOC100131405          0.006   PREDICTED: hypothetical protein 
C4orf8                0.006   hypothetical protein LOC8603 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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