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Search of human proteins with 169215201
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169215201 PREDICTED: similar to Ubiquitin associated and SH3
domain containing, A [Homo sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169215201 PREDICTED: similar to Ubiquitin associated and SH3 ... 255 7e-69
gi|49640014 ubiquitin associated and SH3 domain containing, A sh... 247 2e-66
gi|9507221 ubiquitin associated and SH3 domain containing, A lon... 247 2e-66
gi|24497612 ubiquitin associated and SH3 domain containing, B [H... 130 2e-31
gi|21361517 UBX domain protein 1 [Homo sapiens] 49 7e-07
gi|55770884 ubiquitin associated domain containing 1 [Homo sapiens] 42 1e-04
gi|148727247 ubiquitin specific peptidase 5 isoform 2 [Homo sapi... 41 2e-04
gi|148727331 ubiquitin specific peptidase 5 isoform 1 [Homo sapi... 41 2e-04
gi|215598688 ubiquitin thiolesterase 13 [Homo sapiens] 35 0.011
gi|239756309 PREDICTED: similar to rCG58239 [Homo sapiens] 34 0.031
gi|239750855 PREDICTED: similar to rCG58239 [Homo sapiens] 34 0.031
gi|239745218 PREDICTED: hypothetical protein XP_002343390 [Homo ... 34 0.031
gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens] 32 0.12
gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens] 31 0.20
gi|11072101 rhomboid domain containing 3 [Homo sapiens] 31 0.26
gi|73858561 proline/serine-rich coiled-coil 1 isoform a [Homo sa... 29 0.76
gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo sa... 29 0.76
gi|52630338 proline/serine-rich coiled-coil 1 isoform b [Homo sa... 29 0.76
gi|14249168 proline/serine-rich coiled-coil 1 isoform a [Homo sa... 29 0.76
gi|156104878 glutaminase [Homo sapiens] 28 1.7
gi|209862867 poly-U binding splicing factor 60KDa isoform c [Hom... 28 1.7
gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo... 28 1.7
gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo... 28 1.7
gi|149192843 hypothetical protein LOC54627 [Homo sapiens] 27 2.9
gi|47778943 syntaxin 16 isoform a [Homo sapiens] 27 3.8
gi|39995082 NOL1/NOP2/Sun domain family, member 2 [Homo sapiens] 27 3.8
gi|198041692 syntaxin 16 isoform d [Homo sapiens] 27 3.8
gi|198041688 syntaxin 16 isoform c [Homo sapiens] 27 3.8
gi|34447229 syntaxin 16 isoform b [Homo sapiens] 27 3.8
gi|40806175 diacylglycerol kinase, theta [Homo sapiens] 27 4.9
>gi|169215201 PREDICTED: similar to Ubiquitin associated and SH3
domain containing, A [Homo sapiens]
Length = 122
Score = 255 bits (651), Expect = 7e-69
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MAAGETQLYAKVSNKLKSRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDH 60
MAAGETQLYAKVSNKLKSRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDH
Sbjct: 1 MAAGETQLYAKVSNKLKSRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDH 60
Query: 61 CNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAKNRAHEVFPHVTLCDFFTGP 120
CNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAKNRAHEVFPHVTLCDFFTGP
Sbjct: 61 CNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAKNRAHEVFPHVTLCDFFTGP 120
Query: 121 AV 122
AV
Sbjct: 121 AV 122
>gi|49640014 ubiquitin associated and SH3 domain containing, A short
form [Homo sapiens]
Length = 623
Score = 247 bits (630), Expect = 2e-66
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MAAGETQLYAKVSNKLKSRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDH 60
MAAGETQLYAKVSNKLKSRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDH
Sbjct: 1 MAAGETQLYAKVSNKLKSRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDH 60
Query: 61 CNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAKNRAHEVFPHVTLCDFFT 118
CNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAKNRAHEVFPHVTLCDFFT
Sbjct: 61 CNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAKNRAHEVFPHVTLCDFFT 118
>gi|9507221 ubiquitin associated and SH3 domain containing, A long
form [Homo sapiens]
Length = 661
Score = 247 bits (630), Expect = 2e-66
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MAAGETQLYAKVSNKLKSRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDH 60
MAAGETQLYAKVSNKLKSRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDH
Sbjct: 1 MAAGETQLYAKVSNKLKSRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDH 60
Query: 61 CNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAKNRAHEVFPHVTLCDFFT 118
CNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAKNRAHEVFPHVTLCDFFT
Sbjct: 61 CNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAKNRAHEVFPHVTLCDFFT 118
>gi|24497612 ubiquitin associated and SH3 domain containing, B [Homo
sapiens]
Length = 649
Score = 130 bits (327), Expect = 2e-31
Identities = 63/123 (51%), Positives = 85/123 (69%), Gaps = 7/123 (5%)
Query: 1 MAAGETQLYAKVSNKLKSRSSP------SLLEPLLAMGFPVHTALKALAATGRKTAEEAL 54
MAA E +LY+KV+ + + P S L+ LL+MGFP A KALA+TG ++ + A
Sbjct: 12 MAARE-ELYSKVTPRRNRQQRPGTIKHGSALDVLLSMGFPRARAQKALASTGGRSVQAAC 70
Query: 55 AWLHDHCNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAKNRAHEVFPHVTLC 114
WL H DP LDDP+P+EY L+L PTGPL +KL +FW++SK+ C KN+AH +FPH+TLC
Sbjct: 71 DWLFSHVGDPFLDDPLPREYVLYLRPTGPLAQKLSDFWQQSKQICGKNKAHNIFPHITLC 130
Query: 115 DFF 117
FF
Sbjct: 131 QFF 133
>gi|21361517 UBX domain protein 1 [Homo sapiens]
Length = 312
Score = 49.3 bits (116), Expect = 7e-07
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 25 LEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPI 70
LE L+ MGFP A KALA TG + E A+ WL +H +DP +D+P+
Sbjct: 7 LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 52
>gi|55770884 ubiquitin associated domain containing 1 [Homo sapiens]
Length = 405
Score = 41.6 bits (96), Expect = 1e-04
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 19 RSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPIP 71
R + L L MGFP + A KAL + +A+ WL +H DP++D P+P
Sbjct: 191 RVDEAALRQLTEMGFPENRATKALQLN-HMSVPQAMEWLIEHAEDPTIDTPLP 242
>gi|148727247 ubiquitin specific peptidase 5 isoform 2 [Homo
sapiens]
Length = 835
Score = 41.2 bits (95), Expect = 2e-04
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 23 SLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPI 70
S++ L+ MGFP+ KA+ TG AE A+ W+ H +DP +P+
Sbjct: 635 SVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPL 682
Score = 30.0 bits (66), Expect = 0.45
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 28 LLAMGFPVHTALKALAATGRKTAEEALAWLHDHCND 63
+++MGF ALKAL AT + E A+ W+ H +D
Sbjct: 708 IVSMGFSRDQALKALRAT-NNSLERAVDWIFSHIDD 742
>gi|148727331 ubiquitin specific peptidase 5 isoform 1 [Homo
sapiens]
Length = 858
Score = 41.2 bits (95), Expect = 2e-04
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 23 SLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPI 70
S++ L+ MGFP+ KA+ TG AE A+ W+ H +DP +P+
Sbjct: 658 SVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPL 705
Score = 30.0 bits (66), Expect = 0.45
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 28 LLAMGFPVHTALKALAATGRKTAEEALAWLHDHCND 63
+++MGF ALKAL AT + E A+ W+ H +D
Sbjct: 731 IVSMGFSRDQALKALRAT-NNSLERAVDWIFSHIDD 765
>gi|215598688 ubiquitin thiolesterase 13 [Homo sapiens]
Length = 863
Score = 35.4 bits (80), Expect = 0.011
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 28 LLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPI 70
L MGFP+ KA+ TG AE A W+ H +P +P+
Sbjct: 661 LAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPL 703
>gi|239756309 PREDICTED: similar to rCG58239 [Homo sapiens]
Length = 156
Score = 33.9 bits (76), Expect = 0.031
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 18 SRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWL 57
S+ L+ P++A+G+P+ A+ AL TGR++ + L++L
Sbjct: 44 SQEEQDLIGPVVALGYPLRRAIIALQKTGRQSLSQFLSYL 83
>gi|239750855 PREDICTED: similar to rCG58239 [Homo sapiens]
Length = 156
Score = 33.9 bits (76), Expect = 0.031
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 18 SRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWL 57
S+ L+ P++A+G+P+ A+ AL TGR++ + L++L
Sbjct: 44 SQEEQDLIGPVVALGYPLRRAIIALQKTGRQSLSQFLSYL 83
>gi|239745218 PREDICTED: hypothetical protein XP_002343390 [Homo
sapiens]
Length = 156
Score = 33.9 bits (76), Expect = 0.031
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 18 SRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWL 57
S+ L+ P++A+G+P+ A+ AL TGR++ + L++L
Sbjct: 44 SQEEQDLIGPVVALGYPLRRAIIALQKTGRQSLSQFLSYL 83
>gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]
Length = 4861
Score = 32.0 bits (71), Expect = 0.12
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 3 AGETQLYAKVSNKLKSRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEA------LAW 56
A T L S S P++ PLL MGF + KA+ ATG + +A W
Sbjct: 2732 ANRTALSDPSSRLSTSPPPPAIAVPLLEMGFSLRQIAKAMEATGARGEADAQNITVLAMW 2791
Query: 57 LHDHCNDPSLDDP 69
+ +H ++P
Sbjct: 2792 MIEHPGHEDEEEP 2804
>gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens]
Length = 1017
Score = 31.2 bits (69), Expect = 0.20
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 51 EEALAWLHDHCNDPSLDDPIPQEYALFLCPTGP-----LLEKLQEFWRESKRQCAKNRAH 105
EE L W H C L++ IP++Y ++C P + + W + R C +
Sbjct: 699 EECLCWQHSVCMG-LLEESIPEQYICYICRDPPGQRWSAKYRYDKEWLNNGRMCGLSFFK 757
Query: 106 EVFPHV 111
E + H+
Sbjct: 758 ENYSHL 763
>gi|11072101 rhomboid domain containing 3 [Homo sapiens]
Length = 386
Score = 30.8 bits (68), Expect = 0.26
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 17 KSRSSPSLLEPLLAMGFPVHTALKALAATGR 47
KS S L+ L MGFP A+ ALAATGR
Sbjct: 321 KSSVSSLRLQQLERMGFPTEQAVVALAATGR 351
>gi|73858561 proline/serine-rich coiled-coil 1 isoform a [Homo
sapiens]
Length = 333
Score = 29.3 bits (64), Expect = 0.76
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 49 TAEEALAWLHDHCNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAK 101
T E+ L H +DP+ P PQ L L P P EKL+E E+ R A+
Sbjct: 37 TPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSP--EKLEEILDEANRLAAQ 87
>gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo
sapiens]
Length = 363
Score = 29.3 bits (64), Expect = 0.76
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 49 TAEEALAWLHDHCNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAK 101
T E+ L H +DP+ P PQ L L P P EKL+E E+ R A+
Sbjct: 37 TPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSP--EKLEEILDEANRLAAQ 87
>gi|52630338 proline/serine-rich coiled-coil 1 isoform b [Homo
sapiens]
Length = 310
Score = 29.3 bits (64), Expect = 0.76
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 49 TAEEALAWLHDHCNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAK 101
T E+ L H +DP+ P PQ L L P P EKL+E E+ R A+
Sbjct: 37 TPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSP--EKLEEILDEANRLAAQ 87
>gi|14249168 proline/serine-rich coiled-coil 1 isoform a [Homo
sapiens]
Length = 333
Score = 29.3 bits (64), Expect = 0.76
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 49 TAEEALAWLHDHCNDPSLDDPIPQEYALFLCPTGPLLEKLQEFWRESKRQCAK 101
T E+ L H +DP+ P PQ L L P P EKL+E E+ R A+
Sbjct: 37 TPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLSP--EKLEEILDEANRLAAQ 87
>gi|156104878 glutaminase [Homo sapiens]
Length = 669
Score = 28.1 bits (61), Expect = 1.7
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 7 QLYAKVSNKLKSRSSPSLLEPL---LAMG---FPVHTALKALAATGRKTAEEAL 54
+L A NK+K PSL + L +A G PVH + AL +TG +T++ L
Sbjct: 122 ELVASGENKIKQGLLPSLEDLLFYTIAEGQEKIPVHKFITALKSTGLRTSDPRL 175
>gi|209862867 poly-U binding splicing factor 60KDa isoform c [Homo
sapiens]
Length = 516
Score = 28.1 bits (61), Expect = 1.7
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 24 LLEPLLAMGFPVHTALKALAATGRKTAEEALA 55
LL P G P A+ A AAT + TA+EA+A
Sbjct: 266 LLTPATPGGLPPAAAVAAAAATAKITAQEAVA 297
>gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo
sapiens]
Length = 542
Score = 28.1 bits (61), Expect = 1.7
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 24 LLEPLLAMGFPVHTALKALAATGRKTAEEALA 55
LL P G P A+ A AAT + TA+EA+A
Sbjct: 292 LLTPATPGGLPPAAAVAAAAATAKITAQEAVA 323
>gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo
sapiens]
Length = 559
Score = 28.1 bits (61), Expect = 1.7
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 24 LLEPLLAMGFPVHTALKALAATGRKTAEEALA 55
LL P G P A+ A AAT + TA+EA+A
Sbjct: 309 LLTPATPGGLPPAAAVAAAAATAKITAQEAVA 340
>gi|149192843 hypothetical protein LOC54627 [Homo sapiens]
Length = 1047
Score = 27.3 bits (59), Expect = 2.9
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 12 VSNKLKSRSSPSLLEPLLAMGFPVHTALK-ALAATGRKTAEEA 53
VS K S S+L P + G PVH+ K ++ T K+ EEA
Sbjct: 891 VSKKKNSSDRSSILSPPFSAGSPVHSYRKFHISKTQDKSLEEA 933
>gi|47778943 syntaxin 16 isoform a [Homo sapiens]
Length = 325
Score = 26.9 bits (58), Expect = 3.8
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 48 KTAEEALAWLHD-HCNDPSLDDPIPQEYAL 76
K + LA LHD H N P+LDD +E+A+
Sbjct: 93 KQKMKELASLHDKHLNRPTLDDSSEEEHAI 122
>gi|39995082 NOL1/NOP2/Sun domain family, member 2 [Homo sapiens]
Length = 767
Score = 26.9 bits (58), Expect = 3.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 13 SNKLKSRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDP 64
S + + + S++ PLL P H L AA G KT + + LH N P
Sbjct: 155 SGNISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTT-QLIEMLHADMNVP 205
>gi|198041692 syntaxin 16 isoform d [Homo sapiens]
Length = 308
Score = 26.9 bits (58), Expect = 3.8
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 48 KTAEEALAWLHD-HCNDPSLDDPIPQEYAL 76
K + LA LHD H N P+LDD +E+A+
Sbjct: 76 KQKMKELASLHDKHLNRPTLDDSSEEEHAI 105
>gi|198041688 syntaxin 16 isoform c [Homo sapiens]
Length = 321
Score = 26.9 bits (58), Expect = 3.8
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 48 KTAEEALAWLHD-HCNDPSLDDPIPQEYAL 76
K + LA LHD H N P+LDD +E+A+
Sbjct: 89 KQKMKELASLHDKHLNRPTLDDSSEEEHAI 118
>gi|34447229 syntaxin 16 isoform b [Homo sapiens]
Length = 304
Score = 26.9 bits (58), Expect = 3.8
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 48 KTAEEALAWLHD-HCNDPSLDDPIPQEYAL 76
K + LA LHD H N P+LDD +E+A+
Sbjct: 72 KQKMKELASLHDKHLNRPTLDDSSEEEHAI 101
>gi|40806175 diacylglycerol kinase, theta [Homo sapiens]
Length = 942
Score = 26.6 bits (57), Expect = 4.9
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 83 PLLEKLQEFWRESKRQCAKNR-----AHEVFPHVTL 113
PLL++LQ+ + S RQ ++ R + +V PHV+L
Sbjct: 466 PLLDRLQDIRQMSVRQVSQTRFYVAESRDVAPHVSL 501
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,206,439
Number of Sequences: 37866
Number of extensions: 216054
Number of successful extensions: 508
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 36
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.