Guide to the Human Genome
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Name: STX16 Sequence: fasta or formatted (321aa) NCBI GI: 198041688
Description:

syntaxin 16 isoform c

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [308aa] syntaxin 16 isoform d
alt prot [304aa] syntaxin 16 isoform b
alt prot [325aa] syntaxin 16 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         21           2
 C cysteine            0.9          3           1
 D aspartate           6.5         21           2
 E glutamate           7.8         25           3
 F phenylalanine       2.5          8           2
 G glycine             4.0         13           1
 H histidine           3.1         10           1
 I isoleucine          7.2         23           3
 K lysine              4.7         15           2
 L leucine            11.5         37           3
 M methionine          2.5          8           1
 N asparagine          3.4         11           2
 P proline             2.5          8           3
 Q glutamine           7.2         23           1
 R arginine            8.1         26           2
 S serine              7.5         24           2
 T threonine           4.7         15           2
 V valine              7.5         24           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   syntaxin 16 isoform c 
STX16                 0.990   syntaxin 16 isoform a 
STX16                 0.931   syntaxin 16 isoform d 
STX16                 0.930   syntaxin 16 isoform b 
STX7                  0.114   syntaxin 7 
STX12                 0.114   syntaxin 12 
STX1A                 0.101   syntaxin 1A (brain) 
STX1B                 0.094   syntaxin 1B 
STX3                  0.092   syntaxin 3 
STX2                  0.077   syntaxin 2 isoform 1 
STX2                  0.074   syntaxin 2 isoform 2 
STX4                  0.074   syntaxin 4 
STX5                  0.059   syntaxin 5 
TSNARE1               0.045   t-SNARE domain containing 1 
STX11                 0.039   syntaxin 11 
EEA1                  0.028   early endosome antigen 1, 162kD 
STX19                 0.027   syntaxin 19 
STX10                 0.022   syntaxin 10 
SYNE1                 0.022   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.022   spectrin repeat containing, nuclear envelope 1 isof...
RUFY1                 0.020   RUN and FYVE domain-containing 1 isoform b 
RUFY1                 0.020   RUN and FYVE domain-containing 1 isoform b 
RUFY1                 0.020   RUN and FYVE domain-containing 1 isoform a 
AZI1                  0.018   5-azacytidine induced 1 isoform b 
KIF11                 0.017   kinesin family member 11 
FLJ44817              0.017   similar to pleckstrin homology domain protein (5V32...
VTI1A                 0.017   SNARE Vti1a-beta protein 
STX8                  0.017   syntaxin 8 
KIAA1524              0.013   p90 autoantigen 
MSR1                  0.013   macrophage scavenger receptor 1 isoform type 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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