Guide to the Human Genome
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Name: LOC100131436 Sequence: fasta or formatted (176aa) NCBI GI: 169210715
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {176aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         11           2
 C cysteine            1.7          3           1
 D aspartate           4.0          7           1
 E glutamate           8.5         15           2
 F phenylalanine       2.3          4           1
 G glycine             9.1         16           2
 H histidine           1.7          3           2
 I isoleucine          0.6          1           1
 K lysine              4.0          7           1
 L leucine             8.0         14           2
 M methionine          2.3          4           1
 N asparagine          2.8          5           1
 P proline            13.6         24           2
 Q glutamine           5.7         10           2
 R arginine            9.1         16           2
 S serine              8.0         14           2
 T threonine           6.8         12           2
 V valine              4.5          8           1
 W tryptophan          0.6          1           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131436          0.991   PREDICTED: hypothetical protein 
AKT1S1                0.032   AKT1 substrate 1 (proline-rich) 
AKT1S1                0.032   AKT1 substrate 1 (proline-rich) 
AKT1S1                0.032   AKT1 substrate 1 (proline-rich) 
CTDP1                 0.029   CTD (carboxy-terminal domain, RNA polymerase II, pol...
CTDP1                 0.029   CTD (carboxy-terminal domain, RNA polymerase II, pol...
SH3PXD2B              0.023   SH3 and PX domains 2B 
LOC100131368          0.023   PREDICTED: similar to hCG1783157 
LOC100291521          0.023   PREDICTED: hypothetical protein XP_002348052 
LOC100289308          0.023   PREDICTED: hypothetical protein XP_002344215 
HOXA4                 0.020   homeobox A4 
KIAA1217              0.020   sickle tail isoform 1 
COL9A3                0.020   alpha 3 type IX collagen 
ZNF469                0.018   zinc finger protein 469 
NCOA3                 0.018   nuclear receptor coactivator 3 isoform a 
NCOA3                 0.018   nuclear receptor coactivator 3 isoform b 
FLJ20021              0.018   PREDICTED: hypothetical protein 
FLJ20021              0.018   PREDICTED: hypothetical protein 
FLJ20021              0.018   PREDICTED: hypothetical protein 
ZMYND15               0.018   zinc finger, MYND-type containing 15 isoform 1 [Hom...
ZMYND15               0.018   zinc finger, MYND-type containing 15 isoform 2 [Homo...
C12orf68              0.018   hypothetical protein LOC387856 
CDH4                  0.015   cadherin 4, type 1 preproprotein 
LOC100289408          0.015   PREDICTED: hypothetical protein 
LOC100289408          0.015   PREDICTED: hypothetical protein XP_002344217 
COQ10A                0.015   coenzyme Q10 homolog A isoform a 
PDCD7                 0.015   programmed cell death 7 
SS18                  0.015   synovial sarcoma translocation, chromosome 18 isofor...
NFATC4                0.015   nuclear factor of activated T-cells, cytoplasmic, c...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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