Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131436 Sequence: fasta or formatted (176aa) NCBI GI: 169211489
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {176aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         11           2
 C cysteine            1.7          3           1
 D aspartate           4.0          7           1
 E glutamate           8.5         15           2
 F phenylalanine       2.3          4           1
 G glycine             9.1         16           2
 H histidine           1.7          3           2
 I isoleucine          0.6          1           1
 K lysine              4.0          7           1
 L leucine             7.4         13           2
 M methionine          2.3          4           1
 N asparagine          2.8          5           1
 P proline            14.2         25           2
 Q glutamine           5.7         10           2
 R arginine            9.1         16           2
 S serine              8.0         14           2
 T threonine           6.8         12           2
 V valine              4.5          8           1
 W tryptophan          0.6          1           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131436          0.988   PREDICTED: hypothetical protein 
AKT1S1                0.032   AKT1 substrate 1 (proline-rich) 
AKT1S1                0.032   AKT1 substrate 1 (proline-rich) 
AKT1S1                0.032   AKT1 substrate 1 (proline-rich) 
HOXA4                 0.029   homeobox A4 
CTDP1                 0.029   CTD (carboxy-terminal domain, RNA polymerase II, pol...
CTDP1                 0.029   CTD (carboxy-terminal domain, RNA polymerase II, pol...
FLJ20021              0.026   PREDICTED: hypothetical protein 
FLJ20021              0.026   PREDICTED: hypothetical protein 
FLJ20021              0.026   PREDICTED: hypothetical protein 
SH3PXD2B              0.023   SH3 and PX domains 2B 
LOC100131368          0.023   PREDICTED: similar to hCG1783157 
LOC100291521          0.023   PREDICTED: hypothetical protein XP_002348052 
LOC100289308          0.023   PREDICTED: hypothetical protein XP_002344215 
IER5                  0.020   immediate early response 5 
KIAA1217              0.020   sickle tail isoform 1 
COL9A3                0.020   alpha 3 type IX collagen 
C12orf68              0.020   hypothetical protein LOC387856 
LOC100289408          0.017   PREDICTED: hypothetical protein 
LOC100289408          0.017   PREDICTED: hypothetical protein XP_002344217 
ZMYND15               0.017   zinc finger, MYND-type containing 15 isoform 1 [Hom...
ZMYND15               0.017   zinc finger, MYND-type containing 15 isoform 2 [Homo...
COQ10A                0.017   coenzyme Q10 homolog A isoform a 
CDH4                  0.015   cadherin 4, type 1 preproprotein 
MLL2                  0.015   myeloid/lymphoid or mixed-lineage leukemia 2 
LUZP1                 0.015   leucine zipper protein 1 
LUZP1                 0.015   leucine zipper protein 1 
PDCD7                 0.015   programmed cell death 7 
SS18                  0.015   synovial sarcoma translocation, chromosome 18 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press