Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100130692 Sequence: fasta or formatted (199aa) NCBI GI: 169214665
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {199aa} PREDICTED: hypothetical protein
alt mRNA {199aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         21           3
 C cysteine            3.0          6           1
 D aspartate           3.0          6           1
 E glutamate           2.0          4           1
 F phenylalanine       2.0          4           1
 G glycine            17.6         35           2
 H histidine           1.0          2           1
 I isoleucine          0.0          0           0
 K lysine              3.0          6           1
 L leucine             9.0         18           1
 M methionine          1.0          2           1
 N asparagine          1.0          2           1
 P proline             8.0         16           3
 Q glutamine           2.0          4           1
 R arginine           15.1         30           2
 S serine             12.6         25           3
 T threonine           2.5          5           1
 V valine              5.5         11           1
 W tryptophan          1.0          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130692          1.000   PREDICTED: hypothetical protein 
LOC100130692          0.989   PREDICTED: hypothetical protein 
LOC400236             0.037   PREDICTED: hypothetical protein 
LOC400236             0.037   PREDICTED: hypothetical protein 
LOC100287290          0.032   PREDICTED: hypothetical protein 
LOC100287290          0.032   PREDICTED: hypothetical protein XP_002342446 
PKD2                  0.029   polycystin 2 
LTK                   0.026   leukocyte receptor tyrosine kinase isoform 1 precurs...
MAP3K12               0.026   mitogen-activated protein kinase kinase kinase 12 [H...
CDC2L5                0.026   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.026   cell division cycle 2-like 5 isoform 2 
LOC100133882          0.021   PREDICTED: hypothetical protein 
LOC338758             0.021   PREDICTED: hypothetical protein 
LOC728650             0.021   PREDICTED: hypothetical protein 
LOC338758             0.021   PREDICTED: hypothetical protein 
LOC338758             0.021   PREDICTED: hypothetical protein 
COL14A1               0.021   collagen, type XIV, alpha 1 
FAM171A2              0.018   family with sequence similarity 171, member A2 [Hom...
LOC100128979          0.018   PREDICTED: hypothetical protein 
LOC100128979          0.018   PREDICTED: hypothetical protein 
ANKRD60               0.018   PREDICTED: ankyrin repeat domain 60 
ZCCHC3                0.018   zinc finger, CCHC domain containing 3 
LOC728650             0.018   PREDICTED: hypothetical protein 
LOC100128979          0.018   PREDICTED: hypothetical protein 
LOC100292745          0.016   PREDICTED: hypothetical protein 
LOC100131455          0.016   PREDICTED: hypothetical protein 
LOC100287994          0.016   PREDICTED: hypothetical protein 
LOC100290074          0.016   PREDICTED: hypothetical protein XP_002346855 
LOC100131455          0.016   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press