Guide to the Human Genome
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Name: LOC100130692 Sequence: fasta or formatted (199aa) NCBI GI: 169214758
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {199aa} PREDICTED: hypothetical protein
alt prot {199aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         21           3
 C cysteine            3.0          6           1
 D aspartate           3.0          6           1
 E glutamate           2.5          5           1
 F phenylalanine       2.5          5           1
 G glycine            17.6         35           2
 H histidine           1.0          2           1
 I isoleucine          0.0          0           0
 K lysine              2.5          5           1
 L leucine             9.0         18           1
 M methionine          1.0          2           1
 N asparagine          1.0          2           1
 P proline             8.0         16           3
 Q glutamine           2.0          4           1
 R arginine           15.1         30           2
 S serine             12.1         24           2
 T threonine           2.5          5           1
 V valine              5.5         11           1
 W tryptophan          1.0          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130692          0.987   PREDICTED: hypothetical protein 
LOC100130692          0.987   PREDICTED: hypothetical protein 
LOC400236             0.037   PREDICTED: hypothetical protein 
LOC400236             0.037   PREDICTED: hypothetical protein 
LTK                   0.031   leukocyte receptor tyrosine kinase isoform 1 precurs...
LOC100287290          0.029   PREDICTED: hypothetical protein 
LOC100287290          0.029   PREDICTED: hypothetical protein XP_002342446 
MAP3K12               0.024   mitogen-activated protein kinase kinase kinase 12 [H...
CDC2L5                0.024   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.024   cell division cycle 2-like 5 isoform 2 
LOC100128979          0.018   PREDICTED: hypothetical protein 
LOC100128979          0.018   PREDICTED: hypothetical protein 
ZCCHC3                0.018   zinc finger, CCHC domain containing 3 
LOC338758             0.018   PREDICTED: hypothetical protein 
LOC728650             0.018   PREDICTED: hypothetical protein 
LOC338758             0.018   PREDICTED: hypothetical protein 
LOC100128979          0.018   PREDICTED: hypothetical protein 
LOC338758             0.018   PREDICTED: hypothetical protein 
COL14A1               0.018   collagen, type XIV, alpha 1 
FAM171A2              0.016   family with sequence similarity 171, member A2 [Hom...
LOC100133882          0.016   PREDICTED: hypothetical protein 
LOC100292745          0.016   PREDICTED: hypothetical protein 
LOC100290074          0.016   PREDICTED: hypothetical protein XP_002346855 
ANKRD60               0.016   PREDICTED: ankyrin repeat domain 60 
LOC100287034          0.016   PREDICTED: hypothetical protein XP_002342693 
DMRTA2                0.016   DMRT-like family A2 
LOC728317             0.016   PREDICTED: hypothetical protein 
LOC728317             0.016   PREDICTED: hypothetical protein 
LOC728317             0.016   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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