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Search of human proteins with 112734857
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|112734857 hypothetical protein LOC130074 [Homo sapiens]
(195 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|112734857 hypothetical protein LOC130074 [Homo sapiens] 421 e-118
gi|124358904 hypothetical protein LOC23201 [Homo sapiens] 256 9e-69
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 48 6e-06
gi|47132519 Ras association and pleckstrin homology domains 1 is... 48 6e-06
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 47 1e-05
gi|115430223 galectin 3 [Homo sapiens] 46 2e-05
gi|21237805 SWI/SNF-related matrix-associated actin-dependent re... 46 2e-05
gi|54860079 nadrin isoform 1 [Homo sapiens] 45 3e-05
gi|54860105 nadrin isoform 2 [Homo sapiens] 45 3e-05
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 45 3e-05
gi|122937440 multiple EGF-like-domains 9 [Homo sapiens] 45 3e-05
gi|194363725 SWI/SNF-related matrix-associated actin-dependent r... 44 7e-05
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 44 1e-04
gi|21237808 SWI/SNF-related matrix-associated actin-dependent re... 43 1e-04
gi|57165375 glutamate receptor, ionotropic, N-methyl D-aspartate... 42 3e-04
gi|57165373 glutamate receptor, ionotropic, N-methyl D-aspartate... 42 3e-04
gi|24430132 WW domain binding protein 2 [Homo sapiens] 42 3e-04
gi|253970506 Ewing sarcoma breakpoint region 1 isoform 5 [Homo s... 42 4e-04
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 42 4e-04
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 42 4e-04
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 42 4e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 41 6e-04
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 40 0.001
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 40 0.001
gi|38201625 eukaryotic translation initiation factor 4 gamma, 1 ... 40 0.001
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 40 0.001
gi|38201619 eukaryotic translation initiation factor 4 gamma, 1 ... 40 0.001
gi|28558973 mediator complex subunit 14 [Homo sapiens] 40 0.001
gi|110832843 TBP-associated factor 4 [Homo sapiens] 40 0.001
gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming... 40 0.001
>gi|112734857 hypothetical protein LOC130074 [Homo sapiens]
Length = 195
Score = 421 bits (1083), Expect = e-118
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MNPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYK 60
MNPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYK
Sbjct: 1 MNPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYK 60
Query: 61 VSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTT 120
VSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTT
Sbjct: 61 VSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTT 120
Query: 121 VVQPNGMPATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTY 180
VVQPNGMPATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTY
Sbjct: 121 VVQPNGMPATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTY 180
Query: 181 RAPGTPTYSYVPPQW 195
RAPGTPTYSYVPPQW
Sbjct: 181 RAPGTPTYSYVPPQW 195
>gi|124358904 hypothetical protein LOC23201 [Homo sapiens]
Length = 235
Score = 256 bits (654), Expect = 9e-69
Identities = 130/237 (54%), Positives = 152/237 (64%), Gaps = 44/237 (18%)
Query: 1 MNPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTF----------- 49
MNPVYSP G PY N K + Y G+P Y AAAPAY+P++YP +P++
Sbjct: 1 MNPVYSPVQPGAPYGNPKNMAY-TGYPTAYPAAAPAYNPSLYPTNSPSYAPATLLMKQAW 59
Query: 50 -----------------QTG--------------YTPGTPYKVSCSPTSGAVPPYSSSPN 78
TG YT GTPYKV + ++ A PPYS SPN
Sbjct: 60 PQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAPPPYSPSPN 119
Query: 79 PYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPATVYPAPIPP 138
PYQTA+YP+RSAYPQQ+ YAQ G YYTQP+YAA PHVIHHTTVVQPN +P+ +YPAP+
Sbjct: 120 PYQTAMYPIRSAYPQQNLYAQ-GAYYTQPVYAAQPHVIHHTTVVQPNSIPSAIYPAPVAA 178
Query: 139 PRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRAPGTPTYSYVPPQW 195
PR NGV MGMVAGTTMAMSAGTLLT T + HPV++PTYRA GTP YSYVPP W
Sbjct: 179 PRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYVPPHW 235
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 47.8 bits (112), Expect = 6e-06
Identities = 58/198 (29%), Positives = 88/198 (44%), Gaps = 23/198 (11%)
Query: 2 NPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYKV 61
+P YSP S P + Y P Y+ +P+YSP P +PT Y+P +P
Sbjct: 1626 SPSYSPTS---PNYSPTSPSYSPTSP-SYSPTSPSYSPTS-PSYSPT-SPSYSPTSP--- 1676
Query: 62 SCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSP-YAQQGTYY--TQPLYAAPPHVIHH 118
S SPTS + P S S +P + P +Y SP Y+ Y T P Y +P +
Sbjct: 1677 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYS 1735
Query: 119 TTVVQPNGMPATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAP-HPVTV 177
T P+ P + +P P T + T+ + S T+ + TP +P + T
Sbjct: 1736 PT--SPSYSPTSPNYSPTSP--NYTPTSPSYSPTSPSYSP----TSPNYTPTSPNYSPTS 1787
Query: 178 PTYRAPGTPTYSYVPPQW 195
P+Y +P +P+YS P +
Sbjct: 1788 PSY-SPTSPSYSPTSPSY 1804
Score = 47.4 bits (111), Expect = 8e-06
Identities = 58/203 (28%), Positives = 81/203 (39%), Gaps = 19/203 (9%)
Query: 2 NPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYKV 61
+P YSP S P + Y P Y +P+YSP P +PT YTP +P
Sbjct: 1731 SPSYSPTS---PSYSPTSPNYSPTSP-NYTPTSPSYSPTS-PSYSPT-SPNYTPTSP--- 1781
Query: 62 SCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSP-YAQQGTYYTQPLYAAPPHVIHHTT 120
+ SPTS + P S S +P + P Y QSP Y Y+ + P +T
Sbjct: 1782 NYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTP 1841
Query: 121 VVQPNGMPATVYPAPIPPPRG-----NGVTMGMVAGTTMAMSAGT-LLTAHSPTPVAPHP 174
P+ P++ P P T + T+ S T + SPT P
Sbjct: 1842 -TSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP 1900
Query: 175 VTVPT--YRAPGTPTYSYVPPQW 195
V PT +P +PTYS P++
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKY 1923
Score = 44.3 bits (103), Expect = 7e-05
Identities = 56/201 (27%), Positives = 79/201 (39%), Gaps = 28/201 (13%)
Query: 3 PVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYKVS 62
P Y S V G AGF A+ A +SP P +P TPG+P
Sbjct: 1526 PAYGAWSPSVGSGMTPGA---AGFSPSAASDASGFSPGYSPAWSP------TPGSP---- 1572
Query: 63 CSPTSGAVPPYSSSPNPYQTAVY-PVRSAYPQQSP--YAQQGTYY--TQPLYAAPPHVIH 117
+ G PY SP + Y P AY +SP Y Q Y T P Y +P +
Sbjct: 1573 --GSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY-SPTSPSY 1629
Query: 118 HTTVVQPNGMPATVYPAPIPP---PRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHP 174
T PN P + +P P P + + + + S ++SPT + P
Sbjct: 1630 SPT--SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1687
Query: 175 VTVPTYRAPGTPTYSYVPPQW 195
T P+Y +P +P+YS P +
Sbjct: 1688 -TSPSY-SPTSPSYSPTSPSY 1706
Score = 37.4 bits (85), Expect = 0.008
Identities = 33/114 (28%), Positives = 43/114 (37%), Gaps = 20/114 (17%)
Query: 2 NPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNM--YPGANPTFQTG---YTPG 56
+P YSP S + K Y+ +P YSP Y +PT+ YTP
Sbjct: 1857 SPKYSPTSPKYSPTSPK-----------YSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPT 1905
Query: 57 TPYKVSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYA 110
+P SPT P S +P + P S Y SP G T P Y+
Sbjct: 1906 SPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSP----GYSPTSPTYS 1955
Score = 35.0 bits (79), Expect = 0.040
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 2 NPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYKV 61
+P YSP S K Y P Y+ +P Y+P P +PT T Y+P +P
Sbjct: 1871 SPKYSPTSPTYSPTTPK---YSPTSPT-YSPTSPVYTPTS-PKYSPTSPT-YSPTSPKYS 1924
Query: 62 SCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSP 96
SPT P S+ +P P Y SP
Sbjct: 1925 PTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSP 1959
Score = 32.0 bits (71), Expect = 0.34
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 3 PVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYKVS 62
P YSP S Y+ + P Y+ +P YSP P +PT T Y+P +P +
Sbjct: 1886 PKYSPTSP--TYSPTSPVYTPTS--PKYSPTSPTYSPTS-PKYSPTSPT-YSPTSPKGST 1939
Query: 63 CSPTSGAVPPYSSSPNPYQTAVYP 86
SPTS P S + + A+ P
Sbjct: 1940 YSPTSPGYSPTSPTYSLTSPAISP 1963
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 47.8 bits (112), Expect = 6e-06
Identities = 42/135 (31%), Positives = 53/135 (39%), Gaps = 18/135 (13%)
Query: 65 PTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPP------HVIHH 118
P +G VPP P P SA Q P + P ++APP V H
Sbjct: 704 PPNGVVPPPPPPPPPPTPG-----SAMAQLKPAPCAPSL---PQFSAPPPPLKIHQVQHI 755
Query: 119 TTVVQPNGMPATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVP 178
T V P P PAP+PP + + A T+ A + A PTP P P P
Sbjct: 756 TQVAPPTPPPPPPIPAPLPPQAPPKPLVTIPAPTSTKTVAPVVTQAAPPTPTPPVP---P 812
Query: 179 TYRAPGTPTYSYVPP 193
+ P P SY+PP
Sbjct: 813 AKKQPAFPA-SYIPP 826
Score = 33.9 bits (76), Expect = 0.090
Identities = 45/172 (26%), Positives = 61/172 (35%), Gaps = 25/172 (14%)
Query: 30 YAAAAPAYSPNMYPGANPTFQTGYT---PGTPYKVSCSPTSGAVPPYSSSPNPYQTAVYP 86
Y + P SP P T YT P P P PP P P + P
Sbjct: 602 YTSLVPPLSPQ------PKIVTPYTASQPSPPLPPPPPPPPPPPPPPPPPPPPLPSQSAP 655
Query: 87 -VRSAYPQQSPYA-----QQGTYYTQPLYAAP-PHVIHHTTV-----VQPNGMPATVYPA 134
SA P Y+ Q + ++ L+ P P V+ +V V PNG+ P
Sbjct: 656 SAGSAAPMFVKYSTITRLQNASQHSGALFKPPTPPVMQSQSVKPQILVPPNGVVPPPPPP 715
Query: 135 PIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRAPGTP 186
P PP G+ + A ++ + P P+ H V T AP TP
Sbjct: 716 PPPPTPGSAMAQLKPAPCAPSLPQ----FSAPPPPLKIHQVQHITQVAPPTP 763
Score = 28.9 bits (63), Expect = 2.9
Identities = 40/176 (22%), Positives = 63/176 (35%), Gaps = 24/176 (13%)
Query: 26 FPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCSPTSGAVPPYSSSPNPYQTAVY 85
FP + PA P P A+PT +PG + SP G PP P P + +
Sbjct: 927 FPPPPPSPVPAPPPPPPPTASPTPDKSGSPGKKTSKTSSP-GGKKPP----PTPQRNS-- 979
Query: 86 PVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPA--TVYPAPIPPPRG-- 141
S + G + +P + ++ T +G P+ T+ P PP G
Sbjct: 980 ---------SIKSSSGAEHPEPKRPSVDSLVSKFTPPAESGSPSKETLPPPAAPPKPGKL 1030
Query: 142 --NGVTMGMVAGTTMAMSAGTLLTAHSPTPVA--PHPVTVPTYRAPGTPTYSYVPP 193
+GV + V + +L+ V P P + + P T +PP
Sbjct: 1031 NLSGVNLPGVLQQGCVSAKAPVLSGRGKDSVVEFPSPPSDSDFPPPPPETELPLPP 1086
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 46.6 bits (109), Expect = 1e-05
Identities = 54/194 (27%), Positives = 68/194 (35%), Gaps = 35/194 (18%)
Query: 10 SGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCSPTSGA 69
S VP+ A YP+ P G PA P P P PG PY P G
Sbjct: 60 STVPFGPAPTGMYPSVPPTGPPPGPPAPFPPSGPSCPP-------PGGPYPAPTVPGPGP 112
Query: 70 VPPYSSS-------PNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVV 122
PY + P PY P + P G+ + P AP + T
Sbjct: 113 TGPYPTPNMPFPELPRPYGAPTDPAAA-----GPLGPWGSMSSGPW--APGMGGQYPTPN 165
Query: 123 QPNGMPATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRA 182
P P YPAP PPP+ G + GT + G P AP+P +Y
Sbjct: 166 MPYPSPGP-YPAP-PPPQAPGAAPPVPWGTVPPGAWG---------PPAPYPAPTGSYPT 214
Query: 183 PG---TPTYSYVPP 193
PG TP+ + P
Sbjct: 215 PGLYPTPSNPFQVP 228
Score = 36.6 bits (83), Expect = 0.014
Identities = 42/163 (25%), Positives = 56/163 (34%), Gaps = 20/163 (12%)
Query: 35 PAYSPNMYPGANPTFQTGYTPGTPYKVSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQ 94
P P +PG+NP P + S T V P+ +P +V P
Sbjct: 27 PGQPPQGWPGSNPWNNPSAPSSVPSGLPPSATPSTV-PFGPAPTGMYPSVPPTGPPPGPP 85
Query: 95 SPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPATVYPAPIPP----PRGNGVTMGMVA 150
+P+ G + PP + P P YP P P PR G A
Sbjct: 86 APFPPSGP-------SCPPPGGPYPAPTVPGPGPTGPYPTPNMPFPELPRPYGAPTDPAA 138
Query: 151 ----GTTMAMSAGTL---LTAHSPTPVAPHPVTVPTYRAPGTP 186
G +MS+G + PTP P+P P Y AP P
Sbjct: 139 AGPLGPWGSMSSGPWAPGMGGQYPTPNMPYPSPGP-YPAPPPP 180
Score = 34.3 bits (77), Expect = 0.069
Identities = 34/113 (30%), Positives = 39/113 (34%), Gaps = 20/113 (17%)
Query: 9 SSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCSPTSG 68
SSG P+A G YP P SP YP P G P P+ G
Sbjct: 149 SSG-PWAPGMGGQYPT-------PNMPYPSPGPYPAPPPPQAPGAAPPVPW--------G 192
Query: 69 AVPPYS---SSPNPYQTAVYPVRSAYPQQS-PYAQQGTYYTQPLYAAPPHVIH 117
VPP + +P P T YP YP S P+ P PH H
Sbjct: 193 TVPPGAWGPPAPYPAPTGSYPTPGLYPTPSNPFQVPSGPSGAPPMPGGPHSYH 245
>gi|115430223 galectin 3 [Homo sapiens]
Length = 250
Score = 46.2 bits (108), Expect = 2e-05
Identities = 36/98 (36%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 2 NPVYSPGSSGVPYANAKGIGYP-AGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYK 60
NP PG+ G A A G YP A +P Y AP P YPG P G PG P
Sbjct: 18 NPQGWPGAWGNQPAGAGG--YPGASYPGAYPGQAP---PGAYPGQAPP---GAYPGAPGA 69
Query: 61 VSCSPTSGAVPPYSSSPNPYQTAVYP-VRSAYPQQSPY 97
+P G P S P Y ++ P AYP PY
Sbjct: 70 YPGAPAPGVYPGPPSGPGAYPSSGQPSATGAYPATGPY 107
>gi|21237805 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform a [Homo sapiens]
Length = 1214
Score = 45.8 bits (107), Expect = 2e-05
Identities = 51/205 (24%), Positives = 78/205 (38%), Gaps = 28/205 (13%)
Query: 3 PVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGAN--PTFQTGYTPGTP-- 58
P PGS +P A G G + A+ PA + + P + P+ Q G T
Sbjct: 963 PALPPGSQPIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGP 1022
Query: 59 --YKVSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVI 116
+ + +P GAVPP P P+ + +P + P P A G+ + P V
Sbjct: 1023 QQQQPAGAPQPGAVPPGVPPPGPHGPSPFPNQQTPPSMMPGAVPGSGH--------PGVA 1074
Query: 117 HHTTVVQPNGMPATVYPAPIPPPRGNGVTMGMVAGTTM--AMSAGTLLTAHSPTPVAPH- 173
+ + P GM P P PPP + + G +A + + L H P AP
Sbjct: 1075 GNAPLGLPFGM-----PPPPPPPAPSIIPFGSLADSISINLPAPPNLHGHHHHLPFAPGT 1129
Query: 174 ------PVTVPTYRAPGTPTYSYVP 192
PV++ P P + +P
Sbjct: 1130 LPPPNLPVSMANPLHPNLPATTTMP 1154
Score = 32.7 bits (73), Expect = 0.20
Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 93 QQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPATVYPAPIPPPRGNGVTMGMVAGT 152
Q P G+ P AA P +H V PA+V PA P G+G G + +
Sbjct: 960 QPPPALPPGSQPIPPTGAAGPPAVHGLAVA-----PASVVPA----PAGSGAPPGSLGPS 1010
Query: 153 TMAMSAGTLLTAHSPTPV-APHPVTVPTYRAPGTP 186
AG+ P AP P VP PG P
Sbjct: 1011 EQIGQAGSTAGPQQQQPAGAPQPGAVP----PGVP 1041
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 45.4 bits (106), Expect = 3e-05
Identities = 51/183 (27%), Positives = 73/183 (39%), Gaps = 26/183 (14%)
Query: 23 PAGFPMGYAAAAPA-YSPNMYPG------ANPTFQTGYTPGTPYKVSCSPTSGAVPP-YS 74
P G P G +++ + + P++ P + PT TG PG P +P+ + P YS
Sbjct: 647 PPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPPTQHTGQPPGQP----SAPSQLSAPRRYS 702
Query: 75 SSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVI---HHTTVVQPNGMPATV 131
SS +P Q +P P Q P +T+P PP+ + + QP+ P
Sbjct: 703 SSLSPIQAPNHP-----PPQPPTQATPLMHTKPNSQGPPNPMALPSEHGLEQPSHTPPQT 757
Query: 132 YPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRAPGTPTYSYV 191
P PP G + A T+A H+ T P PV P R P P
Sbjct: 758 PTPPSTPPLGK-QNPSLPAPQTLAGGNPETAQPHAGTLPRPRPVPKPRNR-PSVPP---- 811
Query: 192 PPQ 194
PPQ
Sbjct: 812 PPQ 814
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 45.4 bits (106), Expect = 3e-05
Identities = 51/183 (27%), Positives = 73/183 (39%), Gaps = 26/183 (14%)
Query: 23 PAGFPMGYAAAAPA-YSPNMYPG------ANPTFQTGYTPGTPYKVSCSPTSGAVPP-YS 74
P G P G +++ + + P++ P + PT TG PG P +P+ + P YS
Sbjct: 569 PPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPPTQHTGQPPGQP----SAPSQLSAPRRYS 624
Query: 75 SSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVI---HHTTVVQPNGMPATV 131
SS +P Q +P P Q P +T+P PP+ + + QP+ P
Sbjct: 625 SSLSPIQAPNHP-----PPQPPTQATPLMHTKPNSQGPPNPMALPSEHGLEQPSHTPPQT 679
Query: 132 YPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRAPGTPTYSYV 191
P PP G + A T+A H+ T P PV P R P P
Sbjct: 680 PTPPSTPPLGK-QNPSLPAPQTLAGGNPETAQPHAGTLPRPRPVPKPRNR-PSVPP---- 733
Query: 192 PPQ 194
PPQ
Sbjct: 734 PPQ 736
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 45.4 bits (106), Expect = 3e-05
Identities = 46/185 (24%), Positives = 68/185 (36%), Gaps = 23/185 (12%)
Query: 6 SPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCSP 65
+PGS+ VP++ P F + + AP + P T +P + +P
Sbjct: 207 APGSASVPHS------VPDAFQVPLSVPAPVPHSGLVPVQVATSVPAPSPPLAPVPALAP 260
Query: 66 TSGAVPPYSSSPNPYQTA---VYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVV 122
+VP S NP + + PV ++ P P PL A P + V
Sbjct: 261 APPSVPTLISDSNPLSVSASVLVPVPASAPPSGPV---------PLSAPAPAPLS----V 307
Query: 123 QPNGMPATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRA 182
+ P + AP+PP V + M A T A +P P P P P+
Sbjct: 308 PVSAPPLALIQAPVPPSAPTLVLAPVPTPVLAPMPASTPPAAPAP-PSVPMPTPTPSSGP 366
Query: 183 PGTPT 187
P TPT
Sbjct: 367 PSTPT 371
Score = 33.9 bits (76), Expect = 0.090
Identities = 45/199 (22%), Positives = 71/199 (35%), Gaps = 23/199 (11%)
Query: 3 PVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANP---TFQTG--YTPGT 57
P+++P + +P A I A P ++ + + P +FQ G TP
Sbjct: 388 PIFTPAPTPMPAATPAAIPTSAPIPASFSLSRVCFPAAQAPAMQKVPLSFQPGTVLTPSQ 447
Query: 58 PYKVSCSPTSGAVPPYSSSPNPY---QTAVYPVRSAYPQQ--------SPYAQQGTY--- 103
P P+ G ++ P T PV +Y Q SP + Y
Sbjct: 448 PLVYIPPPSCGQPLSVATLPTTLGVSSTLTLPVLPSYLQDRCLPGVLASPELRSYPYAFS 507
Query: 104 YTQPLYAAPPHV---IHHTTVVQPNGMPATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGT 160
+PL + V ++ P+G T PAP P T + A + +
Sbjct: 508 VARPLTSDSKLVSLEVNRLPCTSPSGS-TTTQPAPDGVPGPLADTSLVTASAKVLPTPQP 566
Query: 161 LLTAHSPTPVAPHPVTVPT 179
LL A S + PHP +P+
Sbjct: 567 LLPAPSGSSAPPHPAKMPS 585
Score = 30.4 bits (67), Expect = 1.00
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 12/123 (9%)
Query: 3 PVYSPGSSGVPYANAKGIGYPAGFPMGYA--AAAPAYSPNMYPGANPTFQTGYTPGTPYK 60
PV +P + +P + P PM ++ P +P + P PT TP +
Sbjct: 332 PVPTPVLAPMPASTPPAAPAPPSVPMPTPTPSSGPPSTPTLIPAFAPTPVPAPTPAPIFT 391
Query: 61 VSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYP-------QQSPYA-QQGTYYT--QPLYA 110
+ +P A P + P + R +P Q+ P + Q GT T QPL
Sbjct: 392 PAPTPMPAATPAAIPTSAPIPASFSLSRVCFPAAQAPAMQKVPLSFQPGTVLTPSQPLVY 451
Query: 111 APP 113
PP
Sbjct: 452 IPP 454
>gi|122937440 multiple EGF-like-domains 9 [Homo sapiens]
Length = 639
Score = 45.4 bits (106), Expect = 3e-05
Identities = 50/162 (30%), Positives = 63/162 (38%), Gaps = 23/162 (14%)
Query: 31 AAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCS-PTSGAVPPYSSSPN---PYQTAVYP 86
A A+ A + N+ G Q +PG + S P A P + +P P T P
Sbjct: 23 AVASAASAGNVTGGGGAAGQVDASPGPGLRGEPSHPFPRATAPTAQAPRTGPPRATVHRP 82
Query: 87 VRSAYPQQSPYAQQGTYYTQPLYA-APPHVIHHTTVVQPNGMPATVYPAPIPPPRGNGVT 145
+ + P QSP T PL+A A P TT P G P+P PP +
Sbjct: 83 LAATSPAQSPE-------TTPLWATAGPS---STTFQAPLG------PSPTTPPAAERTS 126
Query: 146 MGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRAPGTPT 187
A T A + TL T P P P TVP P TPT
Sbjct: 127 TTSQAPTRPAPT--TLSTTTGPAPTTPVATTVPAPTTPRTPT 166
>gi|194363725 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform c [Homo sapiens]
Length = 1152
Score = 44.3 bits (103), Expect = 7e-05
Identities = 50/187 (26%), Positives = 71/187 (37%), Gaps = 35/187 (18%)
Query: 3 PVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGAN--PTFQTGYTPGTP-- 58
P PGS +P A G G + A+ PA + + P + P+ Q G T
Sbjct: 994 PALPPGSQPIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGP 1053
Query: 59 --YKVSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVI 116
+ + +P GAVPP P P+ + +P + P P A G+ + P AA I
Sbjct: 1054 QQQQPAGAPQPGAVPPGVPPPGPHGPSPFPNQQTPPSMMPGAVPGSGH--PGVAAQSPAI 1111
Query: 117 HHTTVVQPNGMPATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVT 176
VQ N +P+ +P+P P GT + P P AP P T
Sbjct: 1112 --VAAVQGNLLPSA---SPLPDP-----------GTPL-----------PPDPTAPSPGT 1144
Query: 177 VPTYRAP 183
V P
Sbjct: 1145 VTPVPPP 1151
Score = 32.7 bits (73), Expect = 0.20
Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 93 QQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPATVYPAPIPPPRGNGVTMGMVAGT 152
Q P G+ P AA P +H V PA+V PA P G+G G + +
Sbjct: 991 QPPPALPPGSQPIPPTGAAGPPAVHGLAVA-----PASVVPA----PAGSGAPPGSLGPS 1041
Query: 153 TMAMSAGTLLTAHSPTPV-APHPVTVPTYRAPGTP 186
AG+ P AP P VP PG P
Sbjct: 1042 EQIGQAGSTAGPQQQQPAGAPQPGAVP----PGVP 1072
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 43.5 bits (101), Expect = 1e-04
Identities = 44/179 (24%), Positives = 62/179 (34%), Gaps = 19/179 (10%)
Query: 23 PAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCS-PT----SGAVPPYSSSP 77
P+ P P +P+ NPT T + P TP+ + PT S +P +++P
Sbjct: 1145 PSPSPHPTTTPDPTMAPDPITTLNPTV-TPHFPTTPHPTTTPHPTTITHSTMIPDPTTTP 1203
Query: 78 NPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMP---ATVYPA 134
P+ T + P +P QP P H+T P P +
Sbjct: 1204 QPFTTITHSTMIPDPTTTP---------QPFTTMQPTTTPHSTTPHPTTTPHPTTITHST 1254
Query: 135 PIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTP-VAPHPVTVPTYRAPGTPTYSYVP 192
IP P + TTM T +P P PHP T P PT + P
Sbjct: 1255 MIPDPTTTPQPFTTMQPTTMPHPTTTPHPTTTPHPTTTPHPTTTPHPTMTPDPTTTPYP 1313
Score = 40.8 bits (94), Expect = 7e-04
Identities = 52/189 (27%), Positives = 69/189 (36%), Gaps = 33/189 (17%)
Query: 31 AAAAPAYSPNMYPGANPTFQTGYT--PGTPYKV-SCSPTSGAVPP--------------- 72
++ PA +P P PT T P TP +V S SPTS VP
Sbjct: 1076 SSVVPALTPEPSPTPLPTLPKELTSDPSTPSEVTSLSPTSEQVPESDTTPDLDTTPYSST 1135
Query: 73 ---YSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYT-QPLYAAPPH---VIHHTTVVQPN 125
YS SP+P + +P + P +P T P + PH H TT+
Sbjct: 1136 VSEYSRSPDP-SPSPHPTTTPDPTMAPDPITTLNPTVTPHFPTTPHPTTTPHPTTITHST 1194
Query: 126 GMPATVYPAPIPPPRGNGVTMGMVAG-TTMAMSAGTLLTAHSPTPVAPHPVTVPTYRAPG 184
+P P P P M+ TT T+ +P PHP T P P
Sbjct: 1195 MIPD---PTTTPQPFTTITHSTMIPDPTTTPQPFTTMQPTTTPHSTTPHPTTTP---HPT 1248
Query: 185 TPTYSYVPP 193
T T+S + P
Sbjct: 1249 TITHSTMIP 1257
>gi|21237808 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform b [Homo sapiens]
Length = 1130
Score = 43.1 bits (100), Expect = 1e-04
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 19/147 (12%)
Query: 3 PVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGAN--PTFQTGYTPGTP-- 58
P PGS +P A G G + A+ PA + + P + P+ Q G T
Sbjct: 994 PALPPGSQPIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGP 1053
Query: 59 --YKVSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVI 116
+ + +P GAVPP P P+ + +P + P P A G+ + P V
Sbjct: 1054 QQQQPAGAPQPGAVPPGVPPPGPHGPSPFPNQQTPPSMMPGAVPGSGH--------PGVA 1105
Query: 117 HHTTVVQPN---GMPATVYPAPIPPPR 140
T + P+ P TV P+PPP+
Sbjct: 1106 DPGTPLPPDPTAPSPGTV--TPVPPPQ 1130
Score = 32.7 bits (73), Expect = 0.20
Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 93 QQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPATVYPAPIPPPRGNGVTMGMVAGT 152
Q P G+ P AA P +H V PA+V PA P G+G G + +
Sbjct: 991 QPPPALPPGSQPIPPTGAAGPPAVHGLAVA-----PASVVPA----PAGSGAPPGSLGPS 1041
Query: 153 TMAMSAGTLLTAHSPTPV-APHPVTVPTYRAPGTP 186
AG+ P AP P VP PG P
Sbjct: 1042 EQIGQAGSTAGPQQQQPAGAPQPGAVP----PGVP 1072
Score = 27.7 bits (60), Expect = 6.5
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 123 QPNGMPAT-VYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYR 181
QP G P P +PPP +G + T +M G + + P P P
Sbjct: 1057 QPAGAPQPGAVPPGVPPPGPHGPSPFPNQQTPPSMMPGAVPGSGHPGVADPGTPLPPDPT 1116
Query: 182 APGTPTYSYVPP 193
AP T + VPP
Sbjct: 1117 APSPGTVTPVPP 1128
>gi|57165375 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 42.0 bits (97), Expect = 3e-04
Identities = 42/128 (32%), Positives = 50/128 (39%), Gaps = 35/128 (27%)
Query: 19 GIGYPA---GFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCSPTSGAVPPYSS 75
G YP G+P G P Y+ YPGA P Q + P +PY P Y
Sbjct: 11 GDNYPPPNPGYPGGPQPPMPPYAQPPYPGA-PYPQPPFQP-SPY---------GQPGYPH 59
Query: 76 SPNPYQTAVYPVRSAYPQ----QSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPATV 131
P+PY YP + YPQ Q PY Q+G Y Q Y G P
Sbjct: 60 GPSPYPQGGYP-QGPYPQGGYPQGPYPQEG--YPQGPY-------------PQGGYPQGP 103
Query: 132 YP-APIPP 138
YP +P PP
Sbjct: 104 YPQSPFPP 111
>gi|57165373 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 42.0 bits (97), Expect = 3e-04
Identities = 42/128 (32%), Positives = 50/128 (39%), Gaps = 35/128 (27%)
Query: 19 GIGYPA---GFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCSPTSGAVPPYSS 75
G YP G+P G P Y+ YPGA P Q + P +PY P Y
Sbjct: 11 GDNYPPPNPGYPGGPQPPMPPYAQPPYPGA-PYPQPPFQP-SPY---------GQPGYPH 59
Query: 76 SPNPYQTAVYPVRSAYPQ----QSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPATV 131
P+PY YP + YPQ Q PY Q+G Y Q Y G P
Sbjct: 60 GPSPYPQGGYP-QGPYPQGGYPQGPYPQEG--YPQGPY-------------PQGGYPQGP 103
Query: 132 YP-APIPP 138
YP +P PP
Sbjct: 104 YPQSPFPP 111
>gi|24430132 WW domain binding protein 2 [Homo sapiens]
Length = 261
Score = 42.0 bits (97), Expect = 3e-04
Identities = 42/145 (28%), Positives = 51/145 (35%), Gaps = 26/145 (17%)
Query: 52 GYTPGTPYKVSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAA 111
G P Y S P+ V P P +YP YP P + Y
Sbjct: 136 GEVPSGAYGYSYMPSGAYV-----YPPPVANGMYPCPPGYPYPPPPPE--------FYPG 182
Query: 112 PPHVIHHTTVVQPNGMPATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSP--TP 169
PP + VQP P YP P+ PP G +T A A A S P
Sbjct: 183 PPMMDGAMGYVQP---PPPPYPGPMEPP-----VSGPDVPSTPAAEAKAAEAAASAYYNP 234
Query: 170 VAPHPVTVPTYRAPGTPTYSYVPPQ 194
PH V +PT + P P Y PP+
Sbjct: 235 GNPHNVYMPTSQPPPPP---YYPPE 256
>gi|253970506 Ewing sarcoma breakpoint region 1 isoform 5 [Homo
sapiens]
Length = 354
Score = 41.6 bits (96), Expect = 4e-04
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 7 PGSSGVPYANAKGIGYPAGFPMGYAAAAPAYS--PNMYPGANPTFQTGYTPGTPYKVSCS 64
P + P ++ G P+ +GY + +Y P YP T Y P T Y S
Sbjct: 145 PTETSQPQSSTGGYNQPS---LGYGQSNYSYPQVPGSYPMQPVTAPPSYPP-TSYS-STQ 199
Query: 65 PTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPP 113
PTS YS Q Y S+Y QQS Y QQ +Y QP + PP
Sbjct: 200 PTSYDQSSYS------QQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPP 242
Score = 32.0 bits (71), Expect = 0.34
Identities = 28/109 (25%), Positives = 33/109 (30%), Gaps = 22/109 (20%)
Query: 22 YPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYT-------------------PGTPYKVS 62
Y A GYA AY Y YT P T Y
Sbjct: 21 YTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTATYGQTAYATSYGQPPTGYTTP 80
Query: 63 CSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAA 111
+P + + P Y T V + Q+ YA Q Y TQP Y A
Sbjct: 81 TAPQAYSQPVQGYGTGAYDTTTATVTTT---QASYAAQSAYGTQPAYPA 126
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 41.6 bits (96), Expect = 4e-04
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 7 PGSSGVPYANAKGIGYPAGFPMGYAAAAPAYS--PNMYPGANPTFQTGYTPGTPYKVSCS 64
P + P ++ G P+ +GY + +Y P YP T Y P T Y S
Sbjct: 145 PTETSQPQSSTGGYNQPS---LGYGQSNYSYPQVPGSYPMQPVTAPPSYPP-TSYS-STQ 199
Query: 65 PTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPP 113
PTS YS Q Y S+Y QQS Y QQ +Y QP + PP
Sbjct: 200 PTSYDQSSYS------QQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPP 242
Score = 32.0 bits (71), Expect = 0.34
Identities = 28/109 (25%), Positives = 33/109 (30%), Gaps = 22/109 (20%)
Query: 22 YPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYT-------------------PGTPYKVS 62
Y A GYA AY Y YT P T Y
Sbjct: 21 YTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTATYGQTAYATSYGQPPTGYTTP 80
Query: 63 CSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAA 111
+P + + P Y T V + Q+ YA Q Y TQP Y A
Sbjct: 81 TAPQAYSQPVQGYGTGAYDTTTATVTTT---QASYAAQSAYGTQPAYPA 126
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 41.6 bits (96), Expect = 4e-04
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 7 PGSSGVPYANAKGIGYPAGFPMGYAAAAPAYS--PNMYPGANPTFQTGYTPGTPYKVSCS 64
P + P ++ G P+ +GY + +Y P YP T Y P T Y S
Sbjct: 151 PTETSQPQSSTGGYNQPS---LGYGQSNYSYPQVPGSYPMQPVTAPPSYPP-TSYS-STQ 205
Query: 65 PTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPP 113
PTS YS Q Y S+Y QQS Y QQ +Y QP + PP
Sbjct: 206 PTSYDQSSYS------QQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPP 248
>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
sapiens]
Length = 656
Score = 41.6 bits (96), Expect = 4e-04
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 7 PGSSGVPYANAKGIGYPAGFPMGYAAAAPAYS--PNMYPGANPTFQTGYTPGTPYKVSCS 64
P + P ++ G P+ +GY + +Y P YP T Y P T Y S
Sbjct: 145 PTETSQPQSSTGGYNQPS---LGYGQSNYSYPQVPGSYPMQPVTAPPSYPP-TSYS-STQ 199
Query: 65 PTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPP 113
PTS YS Q Y S+Y QQS Y QQ +Y QP + PP
Sbjct: 200 PTSYDQSSYS------QQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPP 242
Score = 32.0 bits (71), Expect = 0.34
Identities = 28/109 (25%), Positives = 33/109 (30%), Gaps = 22/109 (20%)
Query: 22 YPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYT-------------------PGTPYKVS 62
Y A GYA AY Y YT P T Y
Sbjct: 21 YTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTATYGQTAYATSYGQPPTGYTTP 80
Query: 63 CSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAA 111
+P + + P Y T V + Q+ YA Q Y TQP Y A
Sbjct: 81 TAPQAYSQPVQGYGTGAYDTTTATVTTT---QASYAAQSAYGTQPAYPA 126
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 41.2 bits (95), Expect = 6e-04
Identities = 57/213 (26%), Positives = 75/213 (35%), Gaps = 24/213 (11%)
Query: 2 NPVYSPGSSGVPYANAKGIGYPAG-----------FPM-GYAAAAPAYSPNMYPGANPTF 49
+P +P S V + KG+ P FP G A AP +P + ++
Sbjct: 860 SPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPK 919
Query: 50 QTGYTP---GTPYKVSCSPTSGAVPPYSSSPNPYQTAVYPVRS---AYPQQSPYAQQGTY 103
+ TP G P S SP PP ++ P+P P P +P + +G
Sbjct: 920 KARATPAPKGIP--ASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGP 977
Query: 104 YTQPLYAAPPHVIHHTTVVQPNGMPATVYP--APIPPPRGNGVTMGMVAGTTMAMSAGTL 161
T AP T P G PAT P AP PP G A T A T
Sbjct: 978 ATPSPKGAPTPPA--ATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTP 1035
Query: 162 LTAHSPTPVAPHPVTVPTYRAPGTPTYSYVPPQ 194
A P+P T AP TP + P+
Sbjct: 1036 PAATPPSPKGSPAATPLPKGAPTTPAATLPSPK 1068
Score = 36.2 bits (82), Expect = 0.018
Identities = 51/197 (25%), Positives = 60/197 (30%), Gaps = 27/197 (13%)
Query: 6 SPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCSP 65
+P G P A P G P A P P A P G P+K + +P
Sbjct: 1234 TPSPKGAPTTPAATPPSPKGGP----ATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNP 1289
Query: 66 TSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPN 125
P P P A SP GT P A P + T P
Sbjct: 1290 AVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGT--PPPKGAPTPPAV---TPPSPK 1344
Query: 126 GMPATVYPAPIPPPRGNGVTMGMVAG-----TTMAMSAGTLLTAHSPT--PVAPHPVTVP 178
G P PA P +G T G T + G +T SP P P P P
Sbjct: 1345 GTP--TLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDP 1402
Query: 179 T---------YRAPGTP 186
T +AP TP
Sbjct: 1403 TSPAVIPLSPKKAPATP 1419
Score = 33.5 bits (75), Expect = 0.12
Identities = 47/170 (27%), Positives = 68/170 (40%), Gaps = 35/170 (20%)
Query: 34 APAYSPNMYPGANPTFQTGYTPGTPYKVSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQ 93
APA +P+ ++P TP T YK + SP +PP +SP+P + P +
Sbjct: 1570 APA-TPSSKEASSPP---AVTPST-YKGAPSPKELLIPPAVTSPSPKEAPTPPAVT---- 1620
Query: 94 QSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPATVYPAPIPPPRGNGVTMGMVAGTT 153
P ++G P AP T P P+++ +P P VT M G T
Sbjct: 1621 -PPSPEKG-----PATPAP-----KGTPTSPPVTPSSLKDSPTSPA---SVTCKM--GAT 1664
Query: 154 MAMSAGTLLTAHSPTP-----VAPHP-----VTVPTYRAPGTPTYSYVPP 193
+ ++ L PT VAP P +T PT + P T S P
Sbjct: 1665 VPQASKGLPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSP 1714
Score = 31.2 bits (69), Expect = 0.58
Identities = 38/161 (23%), Positives = 50/161 (31%), Gaps = 20/161 (12%)
Query: 27 PMGYAAAAPAY---SPNMYPGA-----NPTFQTGYTPGTPYKVSCSPTSGAVPPYSSSPN 78
PMG A PA SP P +P T + +P +PP + P+
Sbjct: 1499 PMG-APTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPS 1557
Query: 79 PYQTAVYPVRSAYP--------QQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPAT 130
P +T P P P TY P +P ++ V P+ A
Sbjct: 1558 PKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAP---SPKELLIPPAVTSPSPKEAP 1614
Query: 131 VYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVA 171
PA PP G GT + SPT A
Sbjct: 1615 TPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPA 1655
Score = 30.0 bits (66), Expect = 1.3
Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 22/152 (14%)
Query: 64 SPTSGAVPPYSSSPNP-------YQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVI 116
S S ++PP + P + +A+ PV S+ P++ P G T ++
Sbjct: 733 SVPSPSLPPAGTPPGTKKVDGISHTSALAPVASS-PKECPTEDSGASATASSKGTLTYLA 791
Query: 117 HHTTVVQPNGMPATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTL--------------L 162
+ + + P T P G +G ++ + A L
Sbjct: 792 DSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDSPA 851
Query: 163 TAHSPTPVAPHPVTVPTYRAPGTPTYSYVPPQ 194
T HSPTP +P P+ P +P +PP+
Sbjct: 852 TTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPK 883
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 40.4 bits (93), Expect = 0.001
Identities = 51/204 (25%), Positives = 71/204 (34%), Gaps = 23/204 (11%)
Query: 9 SSGVPYANAKGIGYPAGFPMGYAAAAPAYSPN----MYPGANPTFQTGYTPGTPYKVSCS 64
S G A+ G+ P P ++P+ +P+ + PG+ P PG
Sbjct: 236 SQGAIIADRPGLPGPEHSPSESQPSSPSPTPSPSPVLEPGSEPNLAVLSIPGDTMTTIQM 295
Query: 65 PTSGAVP-------PYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIH 117
+ P PY SP P A P+ S + + + PL A P H
Sbjct: 296 SVEESTPISRETGEPYRLSPEPTPLA-EPILEVEVTLSKPVPESEFSSSPLQAPTPLASH 354
Query: 118 HTTVVQPNGM--------PATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTP 169
+ +PNGM P PPP + +A T A L A SP
Sbjct: 355 TVEIHEPNGMVPSEDLEPEVESSPELAPPPACPSESPVPIAPT--AQPEELLNGAPSPPA 412
Query: 170 VAPHPVTVPTYRAPGTPTYSYVPP 193
V PV+ P +A T S PP
Sbjct: 413 VDLSPVSEPEEQAKEV-TASMAPP 435
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 40.4 bits (93), Expect = 0.001
Identities = 51/204 (25%), Positives = 71/204 (34%), Gaps = 23/204 (11%)
Query: 9 SSGVPYANAKGIGYPAGFPMGYAAAAPAYSPN----MYPGANPTFQTGYTPGTPYKVSCS 64
S G A+ G+ P P ++P+ +P+ + PG+ P PG
Sbjct: 149 SQGAIIADRPGLPGPEHSPSESQPSSPSPTPSPSPVLEPGSEPNLAVLSIPGDTMTTIQM 208
Query: 65 PTSGAVP-------PYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIH 117
+ P PY SP P A P+ S + + + PL A P H
Sbjct: 209 SVEESTPISRETGEPYRLSPEPTPLA-EPILEVEVTLSKPVPESEFSSSPLQAPTPLASH 267
Query: 118 HTTVVQPNGM--------PATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTP 169
+ +PNGM P PPP + +A T A L A SP
Sbjct: 268 TVEIHEPNGMVPSEDLEPEVESSPELAPPPACPSESPVPIAPT--AQPEELLNGAPSPPA 325
Query: 170 VAPHPVTVPTYRAPGTPTYSYVPP 193
V PV+ P +A T S PP
Sbjct: 326 VDLSPVSEPEEQAKEV-TASMAPP 348
>gi|38201625 eukaryotic translation initiation factor 4 gamma, 1
isoform 3 [Homo sapiens]
Length = 1435
Score = 40.4 bits (93), Expect = 0.001
Identities = 51/204 (25%), Positives = 71/204 (34%), Gaps = 23/204 (11%)
Query: 9 SSGVPYANAKGIGYPAGFPMGYAAAAPAYSPN----MYPGANPTFQTGYTPGTPYKVSCS 64
S G A+ G+ P P ++P+ +P+ + PG+ P PG
Sbjct: 72 SQGAIIADRPGLPGPEHSPSESQPSSPSPTPSPSPVLEPGSEPNLAVLSIPGDTMTTIQM 131
Query: 65 PTSGAVP-------PYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIH 117
+ P PY SP P A P+ S + + + PL A P H
Sbjct: 132 SVEESTPISRETGEPYRLSPEPTPLA-EPILEVEVTLSKPVPESEFSSSPLQAPTPLASH 190
Query: 118 HTTVVQPNGM--------PATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTP 169
+ +PNGM P PPP + +A T A L A SP
Sbjct: 191 TVEIHEPNGMVPSEDLEPEVESSPELAPPPACPSESPVPIAPT--AQPEELLNGAPSPPA 248
Query: 170 VAPHPVTVPTYRAPGTPTYSYVPP 193
V PV+ P +A T S PP
Sbjct: 249 VDLSPVSEPEEQAKEV-TASMAPP 271
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 40.4 bits (93), Expect = 0.001
Identities = 51/204 (25%), Positives = 71/204 (34%), Gaps = 23/204 (11%)
Query: 9 SSGVPYANAKGIGYPAGFPMGYAAAAPAYSPN----MYPGANPTFQTGYTPGTPYKVSCS 64
S G A+ G+ P P ++P+ +P+ + PG+ P PG
Sbjct: 236 SQGAIIADRPGLPGPEHSPSESQPSSPSPTPSPSPVLEPGSEPNLAVLSIPGDTMTTIQM 295
Query: 65 PTSGAVP-------PYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIH 117
+ P PY SP P A P+ S + + + PL A P H
Sbjct: 296 SVEESTPISRETGEPYRLSPEPTPLA-EPILEVEVTLSKPVPESEFSSSPLQAPTPLASH 354
Query: 118 HTTVVQPNGM--------PATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTP 169
+ +PNGM P PPP + +A T A L A SP
Sbjct: 355 TVEIHEPNGMVPSEDLEPEVESSPELAPPPACPSESPVPIAPT--AQPEELLNGAPSPPA 412
Query: 170 VAPHPVTVPTYRAPGTPTYSYVPP 193
V PV+ P +A T S PP
Sbjct: 413 VDLSPVSEPEEQAKEV-TASMAPP 435
>gi|38201619 eukaryotic translation initiation factor 4 gamma, 1
isoform 4 [Homo sapiens]
Length = 1403
Score = 40.4 bits (93), Expect = 0.001
Identities = 51/204 (25%), Positives = 71/204 (34%), Gaps = 23/204 (11%)
Query: 9 SSGVPYANAKGIGYPAGFPMGYAAAAPAYSPN----MYPGANPTFQTGYTPGTPYKVSCS 64
S G A+ G+ P P ++P+ +P+ + PG+ P PG
Sbjct: 40 SQGAIIADRPGLPGPEHSPSESQPSSPSPTPSPSPVLEPGSEPNLAVLSIPGDTMTTIQM 99
Query: 65 PTSGAVP-------PYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIH 117
+ P PY SP P A P+ S + + + PL A P H
Sbjct: 100 SVEESTPISRETGEPYRLSPEPTPLA-EPILEVEVTLSKPVPESEFSSSPLQAPTPLASH 158
Query: 118 HTTVVQPNGM--------PATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTP 169
+ +PNGM P PPP + +A T A L A SP
Sbjct: 159 TVEIHEPNGMVPSEDLEPEVESSPELAPPPACPSESPVPIAPT--AQPEELLNGAPSPPA 216
Query: 170 VAPHPVTVPTYRAPGTPTYSYVPP 193
V PV+ P +A T S PP
Sbjct: 217 VDLSPVSEPEEQAKEV-TASMAPP 239
>gi|28558973 mediator complex subunit 14 [Homo sapiens]
Length = 1454
Score = 40.4 bits (93), Expect = 0.001
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 35/127 (27%)
Query: 92 PQQSPYAQQ-GTYYTQPLYAAPPHVIHHTTVVQPNGMPATVYPA---------------- 134
PQQ P+ +Q GT PL + P +H+TV Q M T P
Sbjct: 1004 PQQQPFPKQPGTSGAYPLTSPPTS--YHSTVNQSPSMMHTQSPGNLHAASSPSGALRAPS 1061
Query: 135 -----PIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRA---PGTP 186
P PPP +G+++G G + A GTL P +P+ + P+ RA PG+P
Sbjct: 1062 PASFVPTPPPSSHGISIG--PGASFASPHGTL------DPSSPYTMVSPSGRAGNWPGSP 1113
Query: 187 TYSYVPP 193
S P
Sbjct: 1114 QVSGPSP 1120
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 40.0 bits (92), Expect = 0.001
Identities = 55/210 (26%), Positives = 73/210 (34%), Gaps = 35/210 (16%)
Query: 8 GSSGVPYANAKGIGYPAGFP----MGYAAAAPA-----YSPN-MYPGANPTFQTGYTPGT 57
GS+G A A G PAG G AAAAPA SP + A P QT G
Sbjct: 307 GSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGP 366
Query: 58 ----------PYKVSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQP 107
P P+ AVPP P P P +A ++ T T
Sbjct: 367 ASTAASMVIGPTMQGALPSPAAVPP----PAPGTPTGLPKGAAGAVTQSLSRTPTATTSG 422
Query: 108 LYAAPPHVIHHTTVVQPNGMPATVYPAPIPPP----RGNGVTMGMVAGTTMAMSAG---- 159
+ A + + QP P + +PP R + M+ +A
Sbjct: 423 IRATLTPTVLAPRLPQPPQNPTNIQNFQLPPGMVLVRSENGQLLMIPQQALAQMQAQAHA 482
Query: 160 ---TLLTAHSPTPVAPHPVTVPTYRAPGTP 186
T + TP + PV + T +APGTP
Sbjct: 483 QPQTTMAPRPATPTSAPPVQISTVQAPGTP 512
Score = 37.7 bits (86), Expect = 0.006
Identities = 59/215 (27%), Positives = 68/215 (31%), Gaps = 36/215 (16%)
Query: 8 GSSG----VPYANAKGIG---YPAG--FPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTP 58
GS+G VP A A G PAG P G AA A P PG P G PG P
Sbjct: 132 GSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPG--PGPGPGKP 189
Query: 59 YKVSCSPTSGAVPPYSSSPNPYQTAVYPVRSA----YPQQSPYAQQGTYYTQPLY--AAP 112
+ T +S + AV V + P P A T P AAP
Sbjct: 190 AGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAP 249
Query: 113 PHVIHHTTVVQPNGMPATVYPAPIPPP---------------RGNGVTMGMVAGTTMAMS 157
P P PA PA PPP G V A +
Sbjct: 250 PA----PAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQN 305
Query: 158 AGTLLTAHSPTPVAPHPVTVPTYRAPGTPTYSYVP 192
G+ A +P P A P V PG + P
Sbjct: 306 GGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAP 340
Score = 31.6 bits (70), Expect = 0.45
Identities = 50/192 (26%), Positives = 62/192 (32%), Gaps = 31/192 (16%)
Query: 15 ANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCSPTSGAVPPYS 74
A A G +G P G A A PA PGA P P + G P
Sbjct: 55 AGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAP---------EPPPAGRARPGGGGPQRP 105
Query: 75 SSPNPYQTAVYPVRSAYP----QQSPYAQQGTYYTQPLYAA-----PPHVIHHTTVVQPN 125
P+P + V P A P + P G+ P AA P P
Sbjct: 106 GPPSPRRPLV-PAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPA 164
Query: 126 GMPATVYPAPIP-----PPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVA-------PH 173
+ A P P P P G G G A T+ SA L + H+ P
Sbjct: 165 ALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAA 224
Query: 174 PVTVPTYRAPGT 185
+ +P APGT
Sbjct: 225 LLPLPKPAAPGT 236
Score = 29.6 bits (65), Expect = 1.7
Identities = 42/163 (25%), Positives = 50/163 (30%), Gaps = 31/163 (19%)
Query: 31 AAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCSPTSGAVPPYSSSPNPYQTAVYPVRSA 90
AAAA A P P A P P P ++ G P P P P + A
Sbjct: 142 AAAAVAAGPEPAP-AGPA-----KPAGPAALAARAGPGPGPGPGPGPGPG-----PGKPA 190
Query: 91 YPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPATVYPAPIPPPRGNGVTMGMVA 150
P + +AA P V N PA + P P P G +
Sbjct: 191 GPGAAQTLNGSAALLNSHHAAAP------AVSLVNNGPAALLPLPKPAAPGTVIQTPPFV 244
Query: 151 GTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRAPGTPTYSYVPP 193
G A P P AP P P AP P + PP
Sbjct: 245 G-----------AAAPPAPAAPSPPAAP---APAAPAAAPPPP 273
>gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming
sequence-like 1 [Homo sapiens]
Length = 491
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/131 (27%), Positives = 50/131 (38%), Gaps = 20/131 (15%)
Query: 30 YAAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCSPTSGAVPPYSSSPNPYQTAVYPVRS 89
YA P P +P +P G TP Y + P + PP + P + A P
Sbjct: 341 YAPPPPPPPPISHPMPHPPQAAG-TPHLVYSQAPPPPMTSAPPPITPPPGHIIAQMPPYM 399
Query: 90 AYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTV--------------VQPNGMPATVYPA- 134
+P P Q + P+ A PPH + ++ QP GM ++PA
Sbjct: 400 NHPPPGPPPPQ--HGGPPVTAPPPHHYNPNSLPQFTEDQGTLSPPFTQPGGMSPGIWPAP 457
Query: 135 --PIPPPRGNG 143
P PPPR G
Sbjct: 458 RGPPPPPRLQG 468
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,936,478
Number of Sequences: 37866
Number of extensions: 693094
Number of successful extensions: 3665
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 466
Number of HSP's that attempted gapping in prelim test: 2761
Number of HSP's gapped (non-prelim): 1082
length of query: 195
length of database: 18,247,518
effective HSP length: 97
effective length of query: 98
effective length of database: 14,574,516
effective search space: 1428302568
effective search space used: 1428302568
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.