Guide to the Human Genome
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Name: FAM168B Sequence: fasta or formatted (195aa) NCBI GI: 112734857
Description:

hypothetical protein LOC130074

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         23           4
 C cysteine            0.5          1           1
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       1.0          2           1
 G glycine             9.2         18           1
 H histidine           2.6          5           2
 I isoleucine          1.5          3           1
 K lysine              1.0          2           1
 L leucine             1.5          3           2
 M methionine          4.1          8           1
 N asparagine          3.6          7           1
 P proline            19.5         38           3
 Q glutamine           4.6          9           2
 R arginine            1.5          3           1
 S serine              7.7         15           3
 T threonine          10.8         21           2
 V valine              8.2         16           2
 W tryptophan          0.5          1           1
 Y tyrosine           10.3         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC130074 
FAM168A               0.583   hypothetical protein LOC23201 
POLR2A                0.058   DNA-directed RNA polymerase II A 
RAPH1                 0.058   Ras association and pleckstrin homology domains 1 is...
MAPK1IP1L             0.056   MAPK-interacting and spindle-stabilizing protein [Ho...
LGALS3                0.053   galectin 3 
SMARCC2               0.053   SWI/SNF-related matrix-associated actin-dependent re...
ARHGAP17              0.051   nadrin isoform 1 
ARHGAP17              0.051   nadrin isoform 2 
BCORL1                0.051   BCL6 co-repressor-like 1 
MEGF9                 0.051   multiple EGF-like-domains 9 
SMARCC2               0.048   SWI/SNF-related matrix-associated actin-dependent r...
LOC284297             0.048   hypothetical protein LOC284297 
SMARCC2               0.045   SWI/SNF-related matrix-associated actin-dependent re...
GRINA                 0.043   glutamate receptor, ionotropic, N-methyl D-aspartate...
GRINA                 0.043   glutamate receptor, ionotropic, N-methyl D-aspartate...
WBP2                  0.043   WW domain binding protein 2 
EWSR1                 0.043   Ewing sarcoma breakpoint region 1 isoform 5 
EWSR1                 0.043   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.043   Ewing sarcoma breakpoint region 1 isoform 1 
EWSR1                 0.043   Ewing sarcoma breakpoint region 1 isoform 2 
NACA                  0.040   nascent polypeptide-associated complex alpha subuni...
EIF4G1                0.038   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.038   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.038   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.038   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.038   eukaryotic translation initiation factor 4 gamma, 1 ...
MED14                 0.038   mediator complex subunit 14 
TAF4                  0.038   TBP-associated factor 4 
CBLL1                 0.038   Cas-Br-M (murine) ecotropic retroviral transforming...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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