Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 111607441
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|111607441 hypothetical protein LOC400506 [Homo sapiens]
(458 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|111607441 hypothetical protein LOC400506 [Homo sapiens] 920 0.0
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 70 5e-12
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 61 2e-09
gi|104526627 triadin [Homo sapiens] 61 2e-09
gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform... 55 1e-07
gi|10947135 ATP-binding cassette, sub-family F, member 1 isoform... 54 4e-07
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 54 4e-07
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 53 7e-07
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 52 9e-07
gi|6912246 CD3E antigen, epsilon polypeptide associated protein ... 51 2e-06
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 50 4e-06
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 50 4e-06
gi|44680105 caldesmon 1 isoform 1 [Homo sapiens] 50 6e-06
gi|4557509 cylicin 2 [Homo sapiens] 49 9e-06
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 48 2e-05
gi|148747556 PIN2-interacting protein 1 [Homo sapiens] 47 3e-05
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 47 3e-05
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi... 47 4e-05
gi|148746195 trichohyalin [Homo sapiens] 47 4e-05
gi|156104891 general transcription factor IIF, polypeptide 1, 74... 47 5e-05
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 46 6e-05
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 46 8e-05
gi|221219020 NYD-SP11 protein [Homo sapiens] 45 1e-04
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|33356179 transcription termination factor, RNA polymerase I [... 45 1e-04
gi|30795231 brain abundant, membrane attached signal protein 1 [... 44 2e-04
gi|32483374 nucleolar protein 5A [Homo sapiens] 44 2e-04
gi|217330641 IWS1 homolog [Homo sapiens] 44 2e-04
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1... 44 3e-04
gi|162287219 prune homolog 2 [Homo sapiens] 44 4e-04
>gi|111607441 hypothetical protein LOC400506 [Homo sapiens]
Length = 458
Score = 920 bits (2378), Expect = 0.0
Identities = 458/458 (100%), Positives = 458/458 (100%)
Query: 1 MITKTHKVDLGLPEKKKKKKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPE 60
MITKTHKVDLGLPEKKKKKKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPE
Sbjct: 1 MITKTHKVDLGLPEKKKKKKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPE 60
Query: 61 MPLVKKKKKKKKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSP 120
MPLVKKKKKKKKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSP
Sbjct: 61 MPLVKKKKKKKKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSP 120
Query: 121 LAMSHASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDV 180
LAMSHASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDV
Sbjct: 121 LAMSHASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDV 180
Query: 181 GDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPR 240
GDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPR
Sbjct: 181 GDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPR 240
Query: 241 KGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVA 300
KGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVA
Sbjct: 241 KGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVA 300
Query: 301 GDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASETRKWTGTQFG 360
GDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASETRKWTGTQFG
Sbjct: 301 GDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASETRKWTGTQFG 360
Query: 361 QWDTAGFENEDQKLKFLRLMGGFKNLSPSFSRPASTIARPNMALGKKAADSLQQNLQRDY 420
QWDTAGFENEDQKLKFLRLMGGFKNLSPSFSRPASTIARPNMALGKKAADSLQQNLQRDY
Sbjct: 361 QWDTAGFENEDQKLKFLRLMGGFKNLSPSFSRPASTIARPNMALGKKAADSLQQNLQRDY 420
Query: 421 DRAMSWKYSRGAGLGFSTAPNKIFYIDRNASKSVKLED 458
DRAMSWKYSRGAGLGFSTAPNKIFYIDRNASKSVKLED
Sbjct: 421 DRAMSWKYSRGAGLGFSTAPNKIFYIDRNASKSVKLED 458
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 69.7 bits (169), Expect = 5e-12
Identities = 86/355 (24%), Positives = 136/355 (38%), Gaps = 40/355 (11%)
Query: 13 PEKKKKKKV--VKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPEMPLVKKKKKK 70
PEK++ K VK PE S + SP A SP K A A K K
Sbjct: 533 PEKEEAKSPAEVKSPEKAKSPAKEEAK----SPPEAKSPEKEEAKSPAEVKSPEKAKSPA 588
Query: 71 KKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHASGVK 130
K+ + E + P + KSP+ K S K+ KSP + K
Sbjct: 589 KEEAKSPAEAKSPEKAKSPVKEEAKSPAEAK---------SPVKEEAKSPAEVKSPEKAK 639
Query: 131 TSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKKD 190
+ +EE + +K K +KE+ A+ P + P EA+ K
Sbjct: 640 SPT-----KEEAKSPEKAKSPEKEE--AKSPE--KAKSPVKAEAKSPEKAKSPVKAEAKS 690
Query: 191 EEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVKV 250
E+A K + KSP + VK++ K ++ + + SP K K P K
Sbjct: 691 PEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKA 750
Query: 251 EAPEYIPISD----DPKASAKKKMKS-----KKKVEQPVIEEPALKRKKKKKRKESGVAG 301
++PE D + K AK++ +S +K + PV EE K K KE A
Sbjct: 751 KSPEKAKTLDVKSPEAKTPAKEEARSPADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKAP 810
Query: 302 D---PWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASETRK 353
+ P KEE + ++++ E + + +KA +E+ E +++K
Sbjct: 811 EKEIPKKEEVKSP----VKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKK 861
Score = 61.6 bits (148), Expect = 1e-09
Identities = 94/356 (26%), Positives = 143/356 (40%), Gaps = 28/356 (7%)
Query: 13 PEKKKK--KKVVKEP-ETRYSVLNNDDYFADV-SPLRATSPSKSVAHG-QAPEMPLVKKK 67
PEK K K+ K P E + V A+V SP +A SP+K A + + P ++
Sbjct: 601 PEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKAKSPEKEEA 660
Query: 68 KKKKKGVSTLCEEHVEPETTL-PARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHA 126
K +K S + E PE P + KSP K E S EK KSP+
Sbjct: 661 KSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKE-EAKSPEKA--KSPVKEEAK 717
Query: 127 SGVKT-SPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAR-----EARDV 180
S K SP + + + +K+ K + A+ P D EA+ EAR
Sbjct: 718 SPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARSP 777
Query: 181 GDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPR 240
D K E+A K + KSP + +K+ K ++ K E P+
Sbjct: 778 AD------KFPEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQ 831
Query: 241 KGSKKKPVKVEAPEYIPIS--DDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESG 298
+ K+P K E P + + K +KK+ KK+ +P +EE K +K KES
Sbjct: 832 EVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEK--KEPAVEKPKESK 889
Query: 299 VAGDPWKEETDTDLEVVLEKKGNMDEAHI-DQVRRKALQEEIDRESGKTEASETRK 353
V + KEE + +V +K + + + + K E +E +A E K
Sbjct: 890 V--EAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSK 943
Score = 57.8 bits (138), Expect = 2e-08
Identities = 78/324 (24%), Positives = 122/324 (37%), Gaps = 57/324 (17%)
Query: 7 KVDLGLPEKKKK--KKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPEMPLV 64
K + PEK K K+ K PE S DV A +P+K A A + P
Sbjct: 727 KEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTL--DVKSPEAKTPAKEEARSPADKFPEK 784
Query: 65 KKK------KKKKKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKK 118
K K +K S L E+ PE +P + KSP K ++
Sbjct: 785 AKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPV----------------KEEE 828
Query: 119 SPLAMSHASGVKTSPDPRQGEEE-------TRVGKKLKKHKKEKKGAQDPTAFSVQDPWF 171
P VK P++ EEE T K KK + KK A P ++P
Sbjct: 829 KP------QEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAV 882
Query: 172 CEAREAR------DVGDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDAL 225
+ +E++ + D V ++E A + ++ P+E KK+ + +
Sbjct: 883 EKPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEP- 941
Query: 226 PGHSKPSRSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPA 285
SKP+ E++P K K+ K + PE + PK AK K K ++P +P
Sbjct: 942 ---SKPAEKKEAAPEKKDTKEE-KAKKPE-----EKPKTEAKAKEDDKTLSKEP--SKPK 990
Query: 286 LKRKKKKKRKESGVAGDPWKEETD 309
++ +K + + P K D
Sbjct: 991 AEKAEKSSSTDQKDSKPPEKATED 1014
Score = 57.0 bits (136), Expect = 3e-08
Identities = 86/347 (24%), Positives = 123/347 (35%), Gaps = 77/347 (22%)
Query: 13 PEKKKKKKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPEMPLVKKKKKKKK 72
PEK+ K V +E + SP A SP K A A VK +K K
Sbjct: 512 PEKEAKSPVKEEAK---------------SPAEAKSPEKEEAKSPAE----VKSPEKAKS 552
Query: 73 GVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHASGVKTS 132
PA+ KSP K S EK+ KSP + K S
Sbjct: 553 ----------------PAKEEAKSPPEAK---------SPEKEEAKSPAEVKSPEKAK-S 586
Query: 133 PDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKKDEE 192
P + + K K+ A+ P + P EA+ +V K E
Sbjct: 587 PAKEEAKSPAEAKSPEKAKSPVKEEAKSPA--EAKSPVKEEAKSPAEV--------KSPE 636
Query: 193 QAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVKVEA 252
+A K + KSP + K++ K ++ + P ++ SP K K PVK EA
Sbjct: 637 KAKSPTKEEAKSPEKAKSPEKEEAKSPEKAKS------PVKAEAKSPEKA--KSPVKAEA 688
Query: 253 PEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVAGDPWKEETDTDL 312
+ K+ K++ KS +K + PV EE K K KE A P K ++
Sbjct: 689 KS----PEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEE--AKTPEKAKSPVKE 742
Query: 313 EVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASETRKWTGTQF 359
E +K E KA ++ KT A E + +F
Sbjct: 743 EAKSPEKAKSPE--------KAKTLDVKSPEAKTPAKEEARSPADKF 781
Score = 48.9 bits (115), Expect = 9e-06
Identities = 67/310 (21%), Positives = 126/310 (40%), Gaps = 37/310 (11%)
Query: 7 KVDLGLPEKKKK--KKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAH----GQAPE 60
K + PEK K K+ K PE S + + SP +A SP K A ++P
Sbjct: 685 KAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAK----SPEKAKSPVKEEAKTPEKAKSPV 740
Query: 61 MPLVKKKKKKKKGVSTLCEEHVEPETTLPARRTEKSPS----------LRKQVFGHLEFL 110
K +K K + PE PA+ +SP+ ++++V +
Sbjct: 741 KEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARSPADKFPEKAKSPVKEEVKSPEKAK 800
Query: 111 SGEKKNKKSP-LAMSHASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDP 169
S K++ K+P + VK+ + +E +V + KK ++EK A T
Sbjct: 801 SPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTE------ 854
Query: 170 WFCEAREARDVGDTCSVGKKDEEQAALGQKRKR--KSPREHNGKVKKKKKIHQEGDALPG 227
E ++++ KK+ + + +K++ + P+E + KK++ ++ P
Sbjct: 855 ---EKKDSKKE----EAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPE 907
Query: 228 HSKPSRSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKK-VEQPVIEEPAL 286
P++ K +K V + P+ + K + KK+ +KK ++ ++P
Sbjct: 908 KEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEE 967
Query: 287 KRKKKKKRKE 296
K K + K KE
Sbjct: 968 KPKTEAKAKE 977
Score = 42.4 bits (98), Expect = 9e-04
Identities = 49/222 (22%), Positives = 85/222 (38%), Gaps = 26/222 (11%)
Query: 140 EETRVGKKL----KKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKKDEEQAA 195
EET+V +++ +K KE++G ++ E E + K + A
Sbjct: 462 EETQVTEEVTEEEEKEAKEEEGKEE------------EGGEEEEAEGGEEETKSPPAEEA 509
Query: 196 LGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVKVEAPEY 255
+++ KSP + K + K ++ +A S SP K K P + ++PE
Sbjct: 510 ASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEK 569
Query: 256 IPISDDPKASAKKKMKS--KKKVEQPVIEEPALKRKK--KKKRKESGVAGDPWKEETDTD 311
+ + +K KS K++ + P + K K K++ K A P KEE +
Sbjct: 570 EEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSP 629
Query: 312 LEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASETRK 353
EV +K + +A E + K EA K
Sbjct: 630 AEVKSPEKAK------SPTKEEAKSPEKAKSPEKEEAKSPEK 665
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 61.2 bits (147), Expect = 2e-09
Identities = 76/355 (21%), Positives = 157/355 (44%), Gaps = 39/355 (10%)
Query: 15 KKKKKKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPEMPLVKKKKKKKKGV 74
K +KK +P N DD A+ K+VA +A + +KK+ ++K
Sbjct: 198 KGQKKNQKNKPGPNIESGNEDD--------DASFKIKTVAQKKAEKKERERKKRDEEKAK 249
Query: 75 STLCEEHVEPET-------TLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHAS 127
+E E ET ++R + +++ +V + ++ ++P A +
Sbjct: 250 LRKLKEKEELETGKKDQSKQKESQRKFEEETVKSKVTVDTGVIPASEEKAETPTAAEDDN 309
Query: 128 GVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFC----EAREARDVGDT 183
D ++ +++ + G+K +K K++KKG T ++Q+ E R+ R+ +
Sbjct: 310 ----EGDKKKKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEER 365
Query: 184 CS-----VGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESS 238
K+ EE+ +KR+RK +E ++K+++ +EG L + +R+ +
Sbjct: 366 IKRLEELEAKRKEEERLEQEKRERKKQKEK----ERKERLKKEGKLLTKSQREARARAEA 421
Query: 239 PRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESG 298
K + + V+V + + +P P KK+ K +++E + E +++ + E G
Sbjct: 422 TLKLLQAQGVEVPSKDSLP-KKRPIYEDKKRKKIPQQLESKEVSE-SMELCAAVEVMEQG 479
Query: 299 VAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASETRK 353
V P KEET +E E++ + ++A +D A EE ++ G E ++
Sbjct: 480 V---PEKEETPPPVEP--EEEEDTEDAGLDDWEAMASDEETEKVEGNKVHIEVKE 529
Score = 55.8 bits (133), Expect = 8e-08
Identities = 83/375 (22%), Positives = 147/375 (39%), Gaps = 72/375 (19%)
Query: 17 KKKKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPEMPLVKKKKKKKKGVST 76
KK+K E T+ + D+ L A A Q P+ KKKK+KKK
Sbjct: 3 KKQKNKSEDSTKDDI--------DLDALAAEIEGAGAAKEQEPQKSKGKKKKEKKK---- 50
Query: 77 LCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHASGVKTSPDPR 136
++ E + + LE LS E + K+ V P
Sbjct: 51 --QDFDEDD-----------------ILKELEELSLEAQGIKAD-----RETVAVKPTEN 86
Query: 137 QGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKKDEEQAAL 196
EE T KK K K +K+ D + ++D + A+ + S D++ L
Sbjct: 87 NEEEFTSKDKKKKGQKGKKQSFDDNDSEELEDKDSKSKKTAKPKVEMYSGSDDDDDFNKL 146
Query: 197 GQKRKRKSPR------------EHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSK 244
+K K K+ + +++ K+K++ +I+ G++ + ++S RKG K
Sbjct: 147 PKKAKGKAQKSNKKWDGSEEDEDNSKKIKERSRINSSGES---GDESDEFLQS--RKGQK 201
Query: 245 KKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVAGDPW 304
K P ++D AS K K ++KK E+ K +++KKR E
Sbjct: 202 KNQKNKPGPNIESGNEDDDASFKIKTVAQKKAEK--------KERERKKRDEEKAKLRKL 253
Query: 305 KEETDTDLEVVLEKKGNMDEAHIDQVRRK----ALQEEIDRESGKTEASETRKWTGTQFG 360
KE+ + + G D++ + +RK ++ ++ ++G ASE + T T
Sbjct: 254 KEKEELE-------TGKKDQSKQKESQRKFEEETVKSKVTVDTGVIPASEEKAETPTAAE 306
Query: 361 QWDTAGFENEDQKLK 375
+ + +D+K K
Sbjct: 307 DDNEGDKKKKDKKKK 321
Score = 46.6 bits (109), Expect = 5e-05
Identities = 77/363 (21%), Positives = 139/363 (38%), Gaps = 31/363 (8%)
Query: 16 KKKKKVVKEPETRYSVLNN-DDYFADVSPLRATSPSKSVAHGQAPEMPLVKKKKKKK--K 72
KKKK+ K+ +L ++ + ++A + +V + E K KKKK K
Sbjct: 43 KKKKEKKKQDFDEDDILKELEELSLEAQGIKADRETVAVKPTENNEEEFTSKDKKKKGQK 102
Query: 73 GVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHASGVKTS 132
G +++ E +++K+ + +++ + K K + S K
Sbjct: 103 GKKQSFDDNDSEELEDKDSKSKKTAKPKVEMYSGSDDDDDFNKLPKKAKGKAQKSNKKWD 162
Query: 133 PDPRQGEEETRVGKKLKKHKKEKKGAQ--DPTAFSVQDPWFCEAREARDVGDTCSVGKKD 190
EE+ KK+K+ + + D + +Q + + G G +D
Sbjct: 163 GS----EEDEDNSKKIKERSRINSSGESGDESDEFLQSRKGQKKNQKNKPGPNIESGNED 218
Query: 191 EEQA----ALGQKRKRKSPREHNGKVKKKKKIHQ--EGDALPGHSKPSRSMESSPRKGSK 244
++ + + QK+ K RE + ++K K+ + E + L K + S RK +
Sbjct: 219 DDASFKIKTVAQKKAEKKERERKKRDEEKAKLRKLKEKEELETGKKDQSKQKESQRKFEE 278
Query: 245 ---KKPVKVEAPEYIPIS-----------DDPKASAKKKMKSKKKVEQPVIEEPALKRKK 290
K V V+ IP S DD + KKK K KKK E+ E+ K
Sbjct: 279 ETVKSKVTVDTG-VIPASEEKAETPTAAEDDNEGDKKKKDKKKKKGEKEEKEKEKKKGPS 337
Query: 291 KKKRKESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASE 350
K K A KEE + E+ ++E + + L++E RE K + E
Sbjct: 338 KATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKRKEEERLEQE-KRERKKQKEKE 396
Query: 351 TRK 353
++
Sbjct: 397 RKE 399
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 61.2 bits (147), Expect = 2e-09
Identities = 86/361 (23%), Positives = 149/361 (41%), Gaps = 35/361 (9%)
Query: 13 PEKKK--KKKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPEMPLVKKKKKK 70
PEKK K+K+ K+ + L + A + K V G+ ++ K K+
Sbjct: 180 PEKKATHKEKIEKKEKPETKTLAKEQKKAKTAEKSEEKTKKEVKGGKQEKVKQTAAKVKE 239
Query: 71 KKGVSTLCEEHVEPETTLPARRTEKSP----SLRKQVFGHLEFLSGEKKNKKSPLAMSHA 126
+ + +E + E ++ +K +F H + G+ PL A
Sbjct: 240 VQKTPSKPKEKEDKEKAAVSKHEQKDQYAFCRYMIDIFVHGDLKPGQSPAIPPPLPTEQA 299
Query: 127 SG-VKTSP--DPRQGEE---ETRVGKKLKKHKKE--KKGAQDPTAFSVQDPWFCEAREAR 178
S SP + ++GE+ E +V + KK +KE KK ++ TA V+ +A E +
Sbjct: 300 SRPTPASPALEEKEGEKKKAEKKVTSETKKKEKEDIKKKSEKETAIDVEKKEPGKASETK 359
Query: 179 DVGDTCSV---GKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPG--HSKPSR 233
+ KKDE++ + +K + GK ++KK+ H E P HS PS
Sbjct: 360 QGTVKIAAQAAAKKDEKKEDSKKTKKPAEVEQPKGKKQEKKEKHVEPAKSPKKEHSVPSD 419
Query: 234 SMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPA------LK 287
+ + +K++ V + +P KK+ K+ K VEQ + +E + LK
Sbjct: 420 KQVKAKTERAKEEIGAVSIKKAVP--------GKKEEKTTKTVEQEIRKEKSGKTSSILK 471
Query: 288 RKKKKKRKESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTE 347
K+ K KE V ++E +T + + K G + Q++ K +EE K E
Sbjct: 472 DKEPIKGKEEKVPASLKEKEPETKKDEKMSKAGKEVKPKPPQLQGK--KEEKPEPQIKKE 529
Query: 348 A 348
A
Sbjct: 530 A 530
Score = 52.0 bits (123), Expect = 1e-06
Identities = 73/346 (21%), Positives = 134/346 (38%), Gaps = 26/346 (7%)
Query: 19 KKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPEMPLVKKKKKKKKGV-STL 77
K + EP R ++ D P R + + + + +K+K +KK
Sbjct: 130 KGEIDEPPLRKKEIHKDKTEKQEKPERKIQTKVTHKEKEKGKEKVREKEKPEKKATHKEK 189
Query: 78 CEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHASGVKTSPDPRQ 137
E+ +PET A+ +K+ + K + + G K+ K A KT P++
Sbjct: 190 IEKKEKPETKTLAKEQKKAKTAEKSEEKTKKEVKGGKQEKVKQTAAKVKEVQKTPSKPKE 249
Query: 138 GEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKK-------D 190
E++ + + KH+++ + A FC V G+
Sbjct: 250 KEDKEKAA--VSKHEQKDQYA------------FCRYMIDIFVHGDLKPGQSPAIPPPLP 295
Query: 191 EEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVKV 250
EQA+ + K K +KK+ E +S + + KK+P K
Sbjct: 296 TEQASRPTPASPALEEKEGEKKKAEKKVTSETKKKEKEDIKKKSEKETAIDVEKKEPGKA 355
Query: 251 EAPEYIPISDDPKASAKK--KMKSKKKVEQPVIEEPALKRKKKKKRKESGVAGDPWKEET 308
+ + +A+AKK K + KK ++P E +K++KK K A P KE +
Sbjct: 356 SETKQGTVKIAAQAAAKKDEKKEDSKKTKKPAEVEQPKGKKQEKKEKHVEPAKSPKKEHS 415
Query: 309 -DTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASETRK 353
+D +V + + +E + +KA+ + + ++ KT E RK
Sbjct: 416 VPSDKQVKAKTERAKEEIGAVSI-KKAVPGKKEEKTTKTVEQEIRK 460
Score = 37.0 bits (84), Expect = 0.037
Identities = 65/300 (21%), Positives = 108/300 (36%), Gaps = 64/300 (21%)
Query: 11 GLPEKKKKKKV--VKEPETRYSVLNNDDYFAD----------VSPLRATSPSKSVAHGQA 58
G ++KK+K V K P+ +SV ++ A VS +A K +
Sbjct: 394 GKKQEKKEKHVEPAKSPKKEHSVPSDKQVKAKTERAKEEIGAVSIKKAVPGKKEEKTTKT 453
Query: 59 PEMPLVKKKKKKKKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKK 118
E + K+K K + E E +PA EK P +K EK +K
Sbjct: 454 VEQEIRKEKSGKTSSILKDKEPIKGKEEKVPASLKEKEPETKKD----------EKMSKA 503
Query: 119 SPLAMSHASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREAR 178
VK P QG++E + ++KK K ++ + ++
Sbjct: 504 G-------KEVKPKPPQLQGKKEEKPEPQIKKEAKP----------AISEKVQIHKQDIV 546
Query: 179 DVGDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESS 238
T S GK +E+ +K+ K + E A P +K + E
Sbjct: 547 KPEKTVSHGKPEEK------------------VLKQVKAVTIEKTAKPKPTKKAEHRERE 588
Query: 239 PRKGSKKKPVKVEAPEYIPI-SDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKES 297
P +K + P+ P + + S KKK + +K + + L+ +K RKES
Sbjct: 589 P------PSIKTDKPKPTPKGTSEVTESGKKKTEISEKESKEKADMKHLREEKVSTRKES 642
>gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform a
[Homo sapiens]
Length = 845
Score = 55.1 bits (131), Expect = 1e-07
Identities = 63/247 (25%), Positives = 104/247 (42%), Gaps = 38/247 (15%)
Query: 133 PDPR---QGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCE-AREARDVGDTCSVGK 188
P+P GE + K +KK KK+KK ++ +F E A E + G+ V K
Sbjct: 10 PEPEWIGDGESTSPSDKVVKKGKKDKK---------IKKTFFEELAVEDKQAGEEEKVLK 60
Query: 189 KDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGD-----------ALPGHSKPSRSMES 237
+ E+Q Q++++K G+ +KK + +G+ ++P +
Sbjct: 61 EKEQQQQQQQQQQKKKRDTRKGR--RKKDVDDDGEEKELMERLKKLSVPTSDEEDEVPAP 118
Query: 238 SPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMK----SKKKVEQPVIEE--PALKRKKK 291
PR G K K V A S++ + K K K ++ + V EE PALK KK
Sbjct: 119 KPRGGKKTKGGNVFAALIQDQSEEEEEEEKHPPKPAKPEKNRINKAVSEEQQPALKGKKG 178
Query: 292 KKRKESGVAGDPWK------EETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGK 345
K+ K G A K EE D + E++ EK+ + + +EE + E +
Sbjct: 179 KEEKSKGKAKPQNKFAALDNEEEDKEEEIIKEKEPPKQGKEKAKKAEQGSEEEGEGEEEE 238
Query: 346 TEASETR 352
E E++
Sbjct: 239 EEGGESK 245
>gi|10947135 ATP-binding cassette, sub-family F, member 1 isoform b
[Homo sapiens]
Length = 807
Score = 53.5 bits (127), Expect = 4e-07
Identities = 64/244 (26%), Positives = 104/244 (42%), Gaps = 41/244 (16%)
Query: 133 PDPR---QGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCE-AREARDVGDTCSVGK 188
P+P GE + K +KK KK+KK ++ +F E A E + G+ V K
Sbjct: 10 PEPEWIGDGESTSPSDKVVKKGKKDKK---------IKKTFFEELAVEDKQAGEEEKVLK 60
Query: 189 KDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGD-----------ALPGHSKPSRSMES 237
+ E+Q Q++++K G+ +KK + +G+ ++P +
Sbjct: 61 EKEQQQQQQQQQQKKKRDTRKGR--RKKDVDDDGEEKELMERLKKLSVPTSDEEDEVPAP 118
Query: 238 SPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMK----SKKKVEQPVIEE--PALKRKKK 291
PR G K K V A S++ + K K K ++ + V EE PALK KK
Sbjct: 119 KPRGGKKTKGGNVFAALIQDQSEEEEEEEKHPPKPAKPEKNRINKAVSEEQQPALKGKKG 178
Query: 292 KKRKESGVAGDPWK------EETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGK 345
K+ K G A K EE D + E++ EK+ + +KA Q E +R+
Sbjct: 179 KEEKSKGKAKPQNKFAALDNEEEDKEEEIIKEKE---PPKQGKEKAKKAEQMEYERQVAS 235
Query: 346 TEAS 349
+A+
Sbjct: 236 LKAA 239
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 53.5 bits (127), Expect = 4e-07
Identities = 59/311 (18%), Positives = 120/311 (38%), Gaps = 49/311 (15%)
Query: 64 VKKKKKKKKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAM 123
+++ K+ + +L +EP+ RR +S S + +++P +
Sbjct: 219 IEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRS--------------RSRRRRTPSSS 264
Query: 124 SHASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDT 183
H S R+ ++R ++ K ++ + +++ R +R T
Sbjct: 265 RHRRS--RSRSRRRSHSKSRSRRRSKSPRRRRSHSRE------------RGRRSRSTSKT 310
Query: 184 CSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGS 243
K+D+E K++ K+P + ++ + +E + SRS SP+K
Sbjct: 311 RDKKKEDKE------KKRSKTPPKSYSTARRSRSASRER-----RRRRSRSGTRSPKKPR 359
Query: 244 KKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVAGDP 303
K +P P+ K+K K K K E + +KKK K KE
Sbjct: 360 SPKRKLSRSPS-------PRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRER-- 410
Query: 304 WKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASETRKWTGTQFGQWD 363
K E+D D++ V ++ + + +K ++ I+ S KT+ K TG +
Sbjct: 411 -KSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEKGTGDSLRESK 469
Query: 364 TAGFENEDQKL 374
G ++ ++ +
Sbjct: 470 VNGDDHHEEDM 480
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 52.8 bits (125), Expect = 7e-07
Identities = 48/214 (22%), Positives = 95/214 (44%), Gaps = 7/214 (3%)
Query: 167 QDPWFCEAREARDVGDTCSVGKKDEEQAALGQKR---KRKSPREHNGKVKKKKKIHQEGD 223
Q W E RE +T GKK+ E ++R KRK RE K ++ KK +
Sbjct: 31 QPGWQSEIREREREIETRKEGKKERESERKKERREREKRKREREKERKRERGKKEKKGER 90
Query: 224 ALPGHSKPSRSMESSPRKGSKK-KPVKVEAPEYIPISDDPKASAKK---KMKSKKKVEQP 279
+ R E ++G +K K K E E S + K +K K + +K+ E+
Sbjct: 91 KKEERERKKRRREKENKEGEEKEKRKKKEKKERGRTSKEGKERERKEERKREERKERERK 150
Query: 280 VIEEPALKRKKKKKRKESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEI 339
E + +K++K++E G+ +E + + + +++ N E ++ R++ + +
Sbjct: 151 KEEREKERERKERKKRERKQVGEKEEERKEKERKERKKRERNRKERKKERERKERRERKK 210
Query: 340 DRESGKTEASETRKWTGTQFGQWDTAGFENEDQK 373
+R+ + E +K T + + + E +++K
Sbjct: 211 ERKKKEERKKERQKDRQTNWREKERGKRERKERK 244
Score = 40.8 bits (94), Expect = 0.003
Identities = 45/232 (19%), Positives = 99/232 (42%), Gaps = 29/232 (12%)
Query: 68 KKKKKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHAS 127
+++++ + T E E E+ R E+ R++ +K +K
Sbjct: 39 REREREIETRKEGKKERESERKKERREREKRKRER-----------EKERKRERGKKEKK 87
Query: 128 GVKTSPD----PRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDT 183
G + + R+ E+E + G++ +K KK++K + T+ ++ E +E R
Sbjct: 88 GERKKEERERKKRRREKENKEGEEKEKRKKKEKKERGRTSKEGKER---ERKEER----- 139
Query: 184 CSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGS 243
K++E + +K +R+ RE K +KK++ Q G+ + R +
Sbjct: 140 ----KREERKERERKKEEREKERER--KERKKRERKQVGEKEEERKEKERKERKKRERNR 193
Query: 244 KKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRK 295
K++ + E E + K ++K + +K + E+ KR++K+++K
Sbjct: 194 KERKKERERKERRERKKERKKKEERKKERQKDRQTNWREKERGKRERKERKK 245
Score = 34.3 bits (77), Expect = 0.24
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 65 KKKKKKKKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMS 124
K+KKK+KK +E E E +R E+ RK+ E E++ K+
Sbjct: 114 KRKKKEKKERGRTSKEGKERERKEERKREERKERERKK-----EEREKERERKERKKRER 168
Query: 125 HASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTC 184
G K + + E+E + KK ++++KE+K + RE ++ +
Sbjct: 169 KQVGEK---EEERKEKERKERKKRERNRKERK----------------KERERKERRERK 209
Query: 185 SVGKKDEEQAALGQKRKRKSPREHNGKVKKKKK 217
KK EE +K++R+ R+ N + K++ K
Sbjct: 210 KERKKKEE-----RKKERQKDRQTNWREKERGK 237
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 52.4 bits (124), Expect = 9e-07
Identities = 70/319 (21%), Positives = 129/319 (40%), Gaps = 35/319 (10%)
Query: 66 KKKKKKKGVSTLCEEHVEPET----TLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPL 121
++K+KK G +E +PE + ++EKS + Q + EKK+ K
Sbjct: 1007 REKEKKDGPDKERKEKTKPERYKEKSSDKDKSEKSILEKCQKDKEFDKCFKEKKDTKEKH 1066
Query: 122 AMSHASGVKTSPDPRQGEEETR------VGKKLKKHKKEKKGAQDP-------TAFSVQD 168
+H + QG+E+ + + + K +KKG + T S D
Sbjct: 1067 KDTHGKDKERKASLDQGKEKKEKAFPGIISEDFSEKKDDKKGKEKSWYIADIFTDESEDD 1126
Query: 169 PWFC-----EAREARDVGDTCSVGKKDEEQAALGQKRKRKSP-REHNGKVKKKKKIHQEG 222
C + EA D+ T + +K+E + A R RKS ++H + K K+ +
Sbjct: 1127 RDSCMGSGFKMGEASDLPRTDGLQEKEEGREAYASDRHRKSSDKQHPERQKDKEPRDRRK 1186
Query: 223 DALPGHSKPSRSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIE 282
D G + R + + K+K K +Y D + + K+K+K+ + +
Sbjct: 1187 DR--GAADAGRDKKEKVFEKHKEKKDKESTEKYKDRKDRASVDSTQDKKNKQKLPEKAEK 1244
Query: 283 EPALKRKKKKKRKESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRE 342
+ A + K K K KE K + + E + + +++ ++++ +AL E RE
Sbjct: 1245 KHAAEDKAKSKHKE--------KSDKEHSKERKSSRSADAEKSLLEKLEEEALHEY--RE 1294
Query: 343 SGKTEASETRKWTGTQFGQ 361
+ SE + T GQ
Sbjct: 1295 DSNDKISEVSSDSFTDRGQ 1313
Score = 29.6 bits (65), Expect = 6.0
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 189 KDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPV 248
KD L K + + PR + K+K+K K E + P + + + K P
Sbjct: 1507 KDSPPRVLKDKSRDEGPRLGDAKLKEKFKDGAEKE----KGDPVKMSNGNDKVAPSKDPG 1562
Query: 249 KVEA-PEYIPISD-DPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKES--GVAGDPW 304
K +A P + D D ++ ++M S+K +E IEE + K++ K+ E +GDP
Sbjct: 1563 KKDARPREKLLGDGDLMMTSFERMLSQKDLE---IEERHKRHKERMKQMEKLRHRSGDPK 1619
Query: 305 KEE 307
+E
Sbjct: 1620 LKE 1622
>gi|6912246 CD3E antigen, epsilon polypeptide associated protein
[Homo sapiens]
Length = 510
Score = 51.2 bits (121), Expect = 2e-06
Identities = 80/331 (24%), Positives = 111/331 (33%), Gaps = 83/331 (25%)
Query: 10 LGLPE------KKKKKKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPEMPL 63
LG PE KKKK + +KEPE V T P+ P
Sbjct: 203 LGSPEMDVRKKKKKKNQQLKEPEAAGPV--------------GTEPTVETLEPLGVLFPS 248
Query: 64 VKKKKKKKKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAM 123
KK+KK KG T EPE + + L V + ++K +K M
Sbjct: 249 TTKKRKKPKGKETF-----EPEDKTVKQEQINTEPLEDTVLSPTK----KRKRQKGTEGM 299
Query: 124 SHASGVKTSPDPRQGEEETRVGKKL---KKHKKEK-KGAQDPTAFSVQDPWFCEAREARD 179
GV P+ E L KK KKEK + A +P E +
Sbjct: 300 EPEEGVTVESQPQVKVEPLEEAIPLPPTKKRKKEKGQMAMMEPGTEAMEPVEPEMKPLES 359
Query: 180 VGDTCSV----GKKDEEQAALGQ-KRKRKSPREHNGKV---------------------- 212
G T + G K + QAAL K+K K ++ + V
Sbjct: 360 PGGTMAPQQPEGAKPQAQAALAAPKKKTKKEKQQDATVEPETEVVGPELPDDLEPQAAPT 419
Query: 213 --KKKKKIHQEGDA-----------LPGHSKPSRSMESSPRKGSKKKPVKVEAPEYIPIS 259
KKKKK + G LPG +P K KK+ + PE +P
Sbjct: 420 STKKKKKKKERGHTVTEPIQPLEPELPGEGQPEARATPGSTKKRKKQSQESRMPETVPQE 479
Query: 260 DDP----------KASAKKKMKSKKKVEQPV 280
+ P +A + K K++ +QPV
Sbjct: 480 EMPGPPLNSESGEEAPTGRDKKRKQQQQQPV 510
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 50.1 bits (118), Expect = 4e-06
Identities = 72/344 (20%), Positives = 129/344 (37%), Gaps = 47/344 (13%)
Query: 9 DLGLPEKKKKKKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPEMPLVKKKK 68
+L + K++KK+ +E E ++ A SP++AT+P G+ K
Sbjct: 479 ELAVSMKEEKKEAAEEKEEEPEA-EEEEVAAKKSPVKATAPEVKEEEGE----------K 527
Query: 69 KKKKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHASG 128
++++G EE E + + + E+ S ++ S
Sbjct: 528 EEEEGQ----EEEEEEDEGAKSDQAEEGGSEKE------------------------GSS 559
Query: 129 VKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGK 188
K + +GE E + + K+EKK + + ++ +A+ + V K
Sbjct: 560 EKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPK 619
Query: 189 KDEEQAALGQKRKRKSPREHNGKVK-KKKKIHQEGDA----LPGHSKPSRSMESSPRKGS 243
E+ G+ KSP E GK K + ++G + P K + SP +
Sbjct: 620 SPVEEK--GKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVEEK 677
Query: 244 KKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVAGDP 303
K PV E + +K+ + K+ E P E+ K +K K E A P
Sbjct: 678 AKSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESP 737
Query: 304 WKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTE 347
KEE ++ V + K + + K LQ+E ++E E
Sbjct: 738 VKEEAVAEV-VTITKSVKVHLEKETKEEGKPLQQEKEKEKAGGE 780
Score = 48.5 bits (114), Expect = 1e-05
Identities = 74/348 (21%), Positives = 144/348 (41%), Gaps = 30/348 (8%)
Query: 19 KKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHG-QAPEMPLVKKKKKKKKGVSTL 77
+K+++ ETR+S + PL P +++ Q P++ K K + K +
Sbjct: 402 RKLLEGEETRFSTFAG----SITGPLYTHRPPITISSKIQKPKVEAPKLKVQHKFVEEII 457
Query: 78 CEEHVEPETT-----LPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHASGVKTS 132
E VE E + L A E + S++++ E E + ++ +A + T+
Sbjct: 458 EETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATA 517
Query: 133 PDPRQGEEETRVGKKLKKHKKEKKGAQDPTA---FSVQDPWFCEAREARDVGDTCSVGKK 189
P+ ++ E E + ++ ++E +GA+ A S ++ + ++ G+T + +
Sbjct: 518 PEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEG 577
Query: 190 DEEQAALGQKRKRKSPR-------EHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKG 242
+E +A +K + KS + KV+K +K P K + SP +
Sbjct: 578 EEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEE 637
Query: 243 SKKKPVKVEAPEYIPISDDPKASAKKKMKS-------KKKVEQPVIEEPALKRKKKKKRK 295
K PV E S PK+ ++K KS ++K + PV + P + K K +
Sbjct: 638 KGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVG 697
Query: 296 ESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRES 343
+ + KE + E +EKK +E D +K + + E+
Sbjct: 698 KGEQKEEEEKEVKEAPKEEKVEKK---EEKPKDVPEKKKAESPVKEEA 742
Score = 44.3 bits (103), Expect = 2e-04
Identities = 81/354 (22%), Positives = 133/354 (37%), Gaps = 74/354 (20%)
Query: 14 EKKKKKKVVKEPETRYSVLNNDDYFADVS---PLRATSPSKSVAHGQAPEMPLVKKKKKK 70
E K++KKV ++ E V ++ AD P +A SP + + P V K +
Sbjct: 581 EAKEEKKVEEKSE---EVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSP-VPKSPVE 636
Query: 71 KKGVSTLCEEHVE-----PETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSH 125
+KG S + + VE P P KSP + V ++ KSP+ S
Sbjct: 637 EKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPV----------EEKAKSPVPKSP 686
Query: 126 ASGVKTSPDPRQGEEETRVGKKLKK-------HKKEKKGAQDPTAFSVQDPWFCEA---- 174
K+ + +GE++ K++K+ KKE+K P + P EA
Sbjct: 687 VEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEV 746
Query: 175 ------------REARDVGDTCSVGKK----------DEEQAALGQKRKRKSPREHNGKV 212
+E ++ G K+ +EE + G K RK NG+V
Sbjct: 747 VTITKSVKVHLEKETKEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKGSRKEDIAVNGEV 806
Query: 213 KKKKKIHQEGDALPGHSKPSR-----SMESSP---RKGSKKKPVKVEAPEYI-PISDDPK 263
+ K+++ QE + + ++ SP +KG K KV + + I+ +
Sbjct: 807 EGKEEVEQETKEKGSGREEEKGVVTNGLDLSPADEKKGGDKSEEKVVVTKTVEKITSEGG 866
Query: 264 ASAKKKMKSKKKVEQPV------IEEPALKRKKKKKRKESGVAGDPWKEETDTD 311
A K + V Q V EE + KK +K + KE T +D
Sbjct: 867 DGATKYITKSVTVTQKVEEHEETFEEKLVSTKKVEKVTSHAIV----KEVTQSD 916
Score = 29.3 bits (64), Expect = 7.8
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 243 SKKKPVKVEAPEYI-------PISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRK 295
SK + KVEAP+ I ++ K +K ++ + EE A+ K++KK
Sbjct: 434 SKIQKPKVEAPKLKVQHKFVEEIIEETKVEDEKS--EMEEALTAITEELAVSMKEEKKE- 490
Query: 296 ESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASETRKWT 355
A + +EE + + E V KK + +A +V+ +EE ++E + + E +
Sbjct: 491 ----AAEEKEEEPEAEEEEVAAKKSPV-KATAPEVK----EEEGEKEEEEGQEEEEEEDE 541
Query: 356 GTQFGQWDTAGFENEDQKLK 375
G + Q + G E E K
Sbjct: 542 GAKSDQAEEGGSEKEGSSEK 561
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 50.1 bits (118), Expect = 4e-06
Identities = 72/344 (20%), Positives = 129/344 (37%), Gaps = 47/344 (13%)
Query: 9 DLGLPEKKKKKKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPEMPLVKKKK 68
+L + K++KK+ +E E ++ A SP++AT+P G+ K
Sbjct: 103 ELAVSMKEEKKEAAEEKEEEPEA-EEEEVAAKKSPVKATAPEVKEEEGE----------K 151
Query: 69 KKKKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHASG 128
++++G EE E + + + E+ S ++ S
Sbjct: 152 EEEEGQ----EEEEEEDEGAKSDQAEEGGSEKE------------------------GSS 183
Query: 129 VKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGK 188
K + +GE E + + K+EKK + + ++ +A+ + V K
Sbjct: 184 EKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPK 243
Query: 189 KDEEQAALGQKRKRKSPREHNGKVK-KKKKIHQEGDA----LPGHSKPSRSMESSPRKGS 243
E+ G+ KSP E GK K + ++G + P K + SP +
Sbjct: 244 SPVEEK--GKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVEEK 301
Query: 244 KKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVAGDP 303
K PV E + +K+ + K+ E P E+ K +K K E A P
Sbjct: 302 AKSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESP 361
Query: 304 WKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTE 347
KEE ++ V + K + + K LQ+E ++E E
Sbjct: 362 VKEEAVAEV-VTITKSVKVHLEKETKEEGKPLQQEKEKEKAGGE 404
Score = 48.5 bits (114), Expect = 1e-05
Identities = 74/348 (21%), Positives = 144/348 (41%), Gaps = 30/348 (8%)
Query: 19 KKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHG-QAPEMPLVKKKKKKKKGVSTL 77
+K+++ ETR+S + PL P +++ Q P++ K K + K +
Sbjct: 26 RKLLEGEETRFSTFAG----SITGPLYTHRPPITISSKIQKPKVEAPKLKVQHKFVEEII 81
Query: 78 CEEHVEPETT-----LPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHASGVKTS 132
E VE E + L A E + S++++ E E + ++ +A + T+
Sbjct: 82 EETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATA 141
Query: 133 PDPRQGEEETRVGKKLKKHKKEKKGAQDPTA---FSVQDPWFCEAREARDVGDTCSVGKK 189
P+ ++ E E + ++ ++E +GA+ A S ++ + ++ G+T + +
Sbjct: 142 PEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEG 201
Query: 190 DEEQAALGQKRKRKSPR-------EHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKG 242
+E +A +K + KS + KV+K +K P K + SP +
Sbjct: 202 EEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEE 261
Query: 243 SKKKPVKVEAPEYIPISDDPKASAKKKMKS-------KKKVEQPVIEEPALKRKKKKKRK 295
K PV E S PK+ ++K KS ++K + PV + P + K K +
Sbjct: 262 KGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVG 321
Query: 296 ESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRES 343
+ + KE + E +EKK +E D +K + + E+
Sbjct: 322 KGEQKEEEEKEVKEAPKEEKVEKK---EEKPKDVPEKKKAESPVKEEA 366
Score = 44.3 bits (103), Expect = 2e-04
Identities = 81/354 (22%), Positives = 133/354 (37%), Gaps = 74/354 (20%)
Query: 14 EKKKKKKVVKEPETRYSVLNNDDYFADVS---PLRATSPSKSVAHGQAPEMPLVKKKKKK 70
E K++KKV ++ E V ++ AD P +A SP + + P V K +
Sbjct: 205 EAKEEKKVEEKSE---EVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSP-VPKSPVE 260
Query: 71 KKGVSTLCEEHVE-----PETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSH 125
+KG S + + VE P P KSP + V ++ KSP+ S
Sbjct: 261 EKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPV----------EEKAKSPVPKSP 310
Query: 126 ASGVKTSPDPRQGEEETRVGKKLKK-------HKKEKKGAQDPTAFSVQDPWFCEA---- 174
K+ + +GE++ K++K+ KKE+K P + P EA
Sbjct: 311 VEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEV 370
Query: 175 ------------REARDVGDTCSVGKK----------DEEQAALGQKRKRKSPREHNGKV 212
+E ++ G K+ +EE + G K RK NG+V
Sbjct: 371 VTITKSVKVHLEKETKEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKGSRKEDIAVNGEV 430
Query: 213 KKKKKIHQEGDALPGHSKPSR-----SMESSP---RKGSKKKPVKVEAPEYI-PISDDPK 263
+ K+++ QE + + ++ SP +KG K KV + + I+ +
Sbjct: 431 EGKEEVEQETKEKGSGREEEKGVVTNGLDLSPADEKKGGDKSEEKVVVTKTVEKITSEGG 490
Query: 264 ASAKKKMKSKKKVEQPV------IEEPALKRKKKKKRKESGVAGDPWKEETDTD 311
A K + V Q V EE + KK +K + KE T +D
Sbjct: 491 DGATKYITKSVTVTQKVEEHEETFEEKLVSTKKVEKVTSHAIV----KEVTQSD 540
Score = 29.3 bits (64), Expect = 7.8
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 243 SKKKPVKVEAPEYI-------PISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRK 295
SK + KVEAP+ I ++ K +K ++ + EE A+ K++KK
Sbjct: 58 SKIQKPKVEAPKLKVQHKFVEEIIEETKVEDEKS--EMEEALTAITEELAVSMKEEKKE- 114
Query: 296 ESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASETRKWT 355
A + +EE + + E V KK + +A +V+ +EE ++E + + E +
Sbjct: 115 ----AAEEKEEEPEAEEEEVAAKKSPV-KATAPEVK----EEEGEKEEEEGQEEEEEEDE 165
Query: 356 GTQFGQWDTAGFENEDQKLK 375
G + Q + G E E K
Sbjct: 166 GAKSDQAEEGGSEKEGSSEK 185
>gi|44680105 caldesmon 1 isoform 1 [Homo sapiens]
Length = 793
Score = 49.7 bits (117), Expect = 6e-06
Identities = 56/300 (18%), Positives = 125/300 (41%), Gaps = 25/300 (8%)
Query: 115 KNKKSPLAMSHASGVKTSPDPRQGEEETRVGKKLKKHKK-----EKKGAQDPTAFSVQDP 169
++++ + MS +G +S +P+Q EE + ++ H+K +++ + ++
Sbjct: 218 ESQEETVVMSLKNGQISSEEPKQEEEREQGSDEISHHEKMEEEDKERAEAERARLEAEER 277
Query: 170 WFCEAREARDVGDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHS 229
+A + + + D + + E+ A Q+R+R+ E +++K+ +E +
Sbjct: 278 ERIKAEQDKKIAD--ERARIEAEEKAAAQERERREAEERERMREEEKRAAEERQRIKEEE 335
Query: 230 KPS-----RSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEP 284
K + R E R +++ +K E +A ++K K +++ +EE
Sbjct: 336 KRAAEERQRIKEEEKRAAEERQRIKEEEKRAAEERQRARAEEEEKAKVEEQKRNKQLEEK 395
Query: 285 --ALKRKKKKKRKESGVAGDPW---KEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEI 339
A++ K K K W K+ + L+ + KK ++ Q +R+ LQE
Sbjct: 396 KHAMQETKIKGEKVEQKIEGKWVNEKKAQEDKLQTAVLKKQGEEKGTKVQAKREKLQE-- 453
Query: 340 DRESGKTEASETRKWTGTQFGQWDTAGFENEDQKLKFLRLMGG------FKNLSPSFSRP 393
D+ + K E + K + + + F + + ++ G K+ +FSRP
Sbjct: 454 DKPTFKKEEIKDEKIKKDKEPKEEVKSFMDRKKGFTEVKSQNGEFMTHKLKHTENTFSRP 513
Score = 37.0 bits (84), Expect = 0.037
Identities = 61/303 (20%), Positives = 127/303 (41%), Gaps = 58/303 (19%)
Query: 54 AHGQAPEMPLVKKKKKKKKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGE 113
A + E V+++K+ K+ ++H ET + + E+ + G+
Sbjct: 373 ARAEEEEKAKVEEQKRNKQLEE---KKHAMQETKIKGEKVEQK-------------IEGK 416
Query: 114 KKNKKSPLAMSHASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCE 173
N+K + ++T+ +QGEE+ G K++ K+EK PT +
Sbjct: 417 WVNEKK----AQEDKLQTAVLKKQGEEK---GTKVQA-KREKLQEDKPTF---------K 459
Query: 174 AREARDVGDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGD-ALPGH--SK 230
E +D K+E ++ + +K+ + NG+ K H E + PG S
Sbjct: 460 KEEIKDEKIKKDKEPKEEVKSFMDRKKGFTEVKSQNGEFMTHKLKHTENTFSRPGGRASV 519
Query: 231 PSRSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKK 290
++ E +P+ + K+ ++ + +++ K K+K ++ +E LK+K+
Sbjct: 520 DTKEAEGAPQVEAGKRLEELRRRR-------GETESEEFEKLKQKQQEAALELEELKKKR 572
Query: 291 KKKRKESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASE 350
+++RK + E K+ D ++ ++ L+EEI+R + EA+E
Sbjct: 573 EERRKV-------------LEEEEQRRKQEEADRKLREEEEKRRLKEEIERR--RAEAAE 617
Query: 351 TRK 353
R+
Sbjct: 618 KRQ 620
>gi|4557509 cylicin 2 [Homo sapiens]
Length = 348
Score = 48.9 bits (115), Expect = 9e-06
Identities = 60/273 (21%), Positives = 113/273 (41%), Gaps = 18/273 (6%)
Query: 84 PETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHASGVKTSPDPRQGEEETR 143
P L ARR P+ +V + G+K K+ + + + +QG+++++
Sbjct: 88 PSVYLAARRQPLKPTRTVEVDSKAAEI-GKKGEDKT----TQKDTTDSESELKQGKKDSK 142
Query: 144 VGKKLKKHKKEKKGAQDPTAFSVQDPWFCE--AREARDV-GDTCSVGKKDEEQAALGQKR 200
GK ++K K+EK A+ + +D + A E+ D G KKD++ + G+
Sbjct: 143 KGKDIEKGKEEKLDAKKDSKKGKKDAEKGKDSATESEDEKGGAKKDNKKDKKDSNKGKDS 202
Query: 201 KRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVKVEAPEYIPISD 260
+S E G K KK ++ + +++++ +K K + E S
Sbjct: 203 ATESEGEKGGTEKDSKKGKKDSKKGKDSAIELQAVKADEKKDEDGKKDANKGDE----SK 258
Query: 261 DPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVAGDPWKEETDTDLEVVLEKKG 320
D K AK+ K KK ++P + K KK+ K+ + DT+ E KK
Sbjct: 259 DAKKDAKEIKKGKKDKKKPSSTDSDSKDDVKKESKKDATKDAKKVAKKDTEKESADSKKD 318
Query: 321 NMDEAHIDQVRRKALQEEIDRESGKTEASETRK 353
A +K +++ + + K E + +K
Sbjct: 319 AKKNA------KKDAKKDAKKNAKKDEKKDAKK 345
Score = 46.6 bits (109), Expect = 5e-05
Identities = 55/221 (24%), Positives = 85/221 (38%), Gaps = 12/221 (5%)
Query: 60 EMPLVKKKKKKKKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKS 119
E+ KK KK K + EE ++ + + + E +K NKK
Sbjct: 133 ELKQGKKDSKKGKDIEKGKEEKLDAKKDSKKGKKDAEKGKDSATESEDEKGGAKKDNKKD 192
Query: 120 PLAMSHASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARD 179
+ T + +G E K K KK K A + A + + ++ +
Sbjct: 193 KKDSNKGKDSATESEGEKGGTEKDSKKGKKDSKKGKDSAIELQAVKADEKKDEDGKKDAN 252
Query: 180 VGDTCSVGKKDEEQAALGQKRKRK---SPREHNGKVKKKKKIHQEGDALPGHSKPSRSME 236
GD KKD ++ G+K K+K + + VKK+ K DA +K E
Sbjct: 253 KGDESKDAKKDAKEIKKGKKDKKKPSSTDSDSKDDVKKESKKDATKDA-KKVAKKDTEKE 311
Query: 237 SSPRKGSKKKPVKVEAPEYIPISDDPKASAKK--KMKSKKK 275
S+ K KK K +A + D K +AKK K +KKK
Sbjct: 312 SADSKKDAKKNAKKDAKK------DAKKNAKKDEKKDAKKK 346
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 47.8 bits (112), Expect = 2e-05
Identities = 83/429 (19%), Positives = 156/429 (36%), Gaps = 87/429 (20%)
Query: 84 PETTLPARRTEK-------SPSLRKQVFGHLEFLSGEKKNKKSPLAMSHASGVKTSPDPR 136
PE T P R +K SP K + S E+K K H S ++ +
Sbjct: 13 PEKTSPDRDKKKEQSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRKHRSRSRS----K 68
Query: 137 QGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKKDEEQAAL 196
+G K KKHK E+ ++ ++ + E + + G+ K+ +
Sbjct: 69 EGRRHESKDKSSKKHKSEEHNDKEHSSDKGR-----ERLNSSENGEDRHKRKERKSSRGR 123
Query: 197 GQKRKRKSPREHNGKVKKKKKIHQEG-DALPGHSKPSRSMESSPRKGSKKKPVKVEAPEY 255
R R R H + +++KK + S+ +S R +K+ ++ +
Sbjct: 124 SHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRRIRSRSRSR 183
Query: 256 IPISDDPKASAKKKMKS---KKKVEQP------VIEEPA--------------------L 286
++ ++ + +S KK++E+P + P+ L
Sbjct: 184 SRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSLSRTPSPPPFRGRNTAMDAQEALARRL 243
Query: 287 KRKKK----------KKRKESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQ 336
+R KK +K+K+ +A + ++ +L + + ALQ
Sbjct: 244 ERAKKLQEQREKEMVEKQKQQEIAAAAATGGSVLNVAALLASGTQVTPQIAMAAQMAALQ 303
Query: 337 EEIDRESGKT----------------EASETRK--WTGTQFGQ-------WDTAGFENED 371
+ E+G E + RK W G + G W+ F N+D
Sbjct: 304 AKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKMLWQGKKEGDKSQSAEIWEKLNFGNKD 363
Query: 372 QKLKFLRLMGGFKNLSPSFSRPASTIARPNMALGKKAADSLQQNLQRDYDRAMSWKYS-R 430
Q +KF +LMG + S++ + K + + +NL Y+ A S ++ R
Sbjct: 364 QNVKFRKLMG----IKSEDEAGCSSVDEESYKT-LKQQEEVFRNLDAQYEMARSQTHTQR 418
Query: 431 GAGLGFSTA 439
G GLGF+++
Sbjct: 419 GMGLGFTSS 427
>gi|148747556 PIN2-interacting protein 1 [Homo sapiens]
Length = 328
Score = 47.4 bits (111), Expect = 3e-05
Identities = 69/297 (23%), Positives = 115/297 (38%), Gaps = 69/297 (23%)
Query: 30 SVLNNDDYFADVSPLRATSPSKSVAHGQAPEMPLVKKKKKKKKGVSTLCEEHVEPETTLP 89
++ N D++ A + HGQ KK+KK +L E+ + +
Sbjct: 70 TINNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKS----FSLEEKSKISKNRVH 125
Query: 90 ARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHASGVKTSPDPRQGEEETRVGKKLK 149
+ K L + L+ + G++++KK+P G + P + E T
Sbjct: 126 YMKFTKGKDLSSRSKTDLDCIFGKRQSKKTP------EGDASPSTPEENETTTT------ 173
Query: 150 KHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKKDEEQAALGQKRKRKSPREHN 209
+AF++Q+ +F + A V D + + +KR +K +E
Sbjct: 174 ------------SAFTIQE-YFAKRMAALKNKPQVPVPGSDISETQVERKRGKKRNKEAT 220
Query: 210 GK-----VKKKKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVKVEAPEYIPISDDP-K 263
GK ++ K K H EG KP R+ + + +KKK E P D K
Sbjct: 221 GKDVESYLQPKAKRHTEG-------KPERA--EAQERVAKKKSAPAEEQLRGPCWDQSSK 271
Query: 264 ASAK------------------KKMKSKKKVEQPV-------IEEPALKRKKKKKRK 295
ASA+ KK + KKK+++PV +EE +K+KKKK K
Sbjct: 272 ASAQDAGDHVQPPEGRDFTLKPKKRRGKKKLQKPVEIAEDATLEETLVKKKKKKDSK 328
Score = 34.7 bits (78), Expect = 0.19
Identities = 41/161 (25%), Positives = 61/161 (37%), Gaps = 36/161 (22%)
Query: 172 CEAREARDVGDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEG----DALPG 227
C +E D D KK+++ +L +K K R H K K K + D + G
Sbjct: 94 CHGQETTDSSD-----KKEKKSFSLEEKSKISKNRVHYMKFTKGKDLSSRSKTDLDCIFG 148
Query: 228 HSKPSRSME-----SSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPV-- 280
+ ++ E S+P + EY AK+ K K + PV
Sbjct: 149 KRQSKKTPEGDASPSTPEENETTTTSAFTIQEYF---------AKRMAALKNKPQVPVPG 199
Query: 281 --IEEPALKRKKKKKRKESGVAGDPWKEETDTDLEVVLEKK 319
I E ++RK+ KKR KE T D+E L+ K
Sbjct: 200 SDISETQVERKRGKKRN---------KEATGKDVESYLQPK 231
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 47.4 bits (111), Expect = 3e-05
Identities = 75/336 (22%), Positives = 128/336 (38%), Gaps = 38/336 (11%)
Query: 38 FADVSPLRATSPSKSVAHGQAPEMPLVKKKKKKKKGVSTLCEEHVEPETTLPARRTEKSP 97
+A + P +P K H +P P ++K VS + V+ + LP+ +
Sbjct: 537 WAQLHPSPQNTPQKVPVHQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQ 596
Query: 98 SLRKQVFGHLEFLSGEKKNKKS--PLAMSHASGVKTSPDPRQGEEETRVGKKLK------ 149
+K+ H+ K K P + + + S D Q E++ + K K
Sbjct: 597 KKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRSKAKKDPKEP 656
Query: 150 ---KHKKEKKGAQDPTAFSV-QDPWFCEAREAR---DVGDTCSVGKKDEEQAALGQK-RK 201
K KKE K + P A + ++P +A+ A S K D E +AL +K K
Sbjct: 657 KEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKKKVNK 716
Query: 202 RKSPREHNGKVKK--KKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVKVEAPEYIPIS 259
K+ N + K E D PG K S + ++ ++ K+ E
Sbjct: 717 GKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEADDAD 776
Query: 260 ----DDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVAGDPWKEETDTDLEVV 315
D P +++ + + E PV+E+ + + KK+KESG + ++E
Sbjct: 777 AAGRDSPSNTSQSEQQESVDAEGPVVEK-IMSSRSVKKQKESG---------EEVEIEEF 826
Query: 316 LEKKGNMDEAHI------DQVRRKALQEEIDRESGK 345
K N H D + K +Q++I R K
Sbjct: 827 YVKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFKAK 862
>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 123
Score = 47.0 bits (110), Expect = 4e-05
Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 40/153 (26%)
Query: 65 KKKKKKKKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMS 124
KKKKKKK+ T E E E +R EK RK EK+ KK
Sbjct: 2 KKKKKKKETEETEETEETEEEEEKEGKRKEKRKEKRK-----------EKEKKK------ 44
Query: 125 HASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTC 184
KT ++ E+E K+ +K KK+K+ E R+ +
Sbjct: 45 -----KTKETEKRKEKEEEEKKRKRKRKKKKE------------------EEEREEEEEE 81
Query: 185 SVGKKDEEQAALGQKRKRKSPREHNGKVKKKKK 217
+K+EE+ G++RK+K R + ++KKK
Sbjct: 82 EEEEKEEEEKEEGRRRKKKKKRRRKEEEEEKKK 114
Score = 40.4 bits (93), Expect = 0.003
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
Query: 175 REARDVGDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRS 234
++ ++ +T + +EE+ G KRK R+ K K+KKK +E + + +
Sbjct: 5 KKKKETEETEETEETEEEEEKEG---KRKEKRKEKRKEKEKKKKTKETE-----KRKEKE 56
Query: 235 MESSPRKGSKKKP------VKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKR 288
E RK +KK + E E ++ K +++ K KK+ + EE KR
Sbjct: 57 EEEKKRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKKKKKRRRKEEEEEKKKKR 116
Query: 289 KKKKKRK 295
++K K+K
Sbjct: 117 RRKTKKK 123
Score = 39.7 bits (91), Expect = 0.006
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 29/149 (19%)
Query: 149 KKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKKDEEQAALGQKRKRKSPREH 208
KK KK+KK E E + +T ++EE+ +K KRK R+
Sbjct: 1 KKKKKKKK----------------ETEETEETEET-----EEEEEKEGKRKEKRKEKRKE 39
Query: 209 NGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKK 268
K KK K+ + + K R + + +++ + E E + KK
Sbjct: 40 KEKKKKTKETEKRKEKEEEEKKRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKK 99
Query: 269 KMKSKKKVEQPVIEEPALKRKKKKKRKES 297
K K ++K E+ + KKKK+R+++
Sbjct: 100 KKKRRRKEEE--------EEKKKKRRRKT 120
Score = 39.7 bits (91), Expect = 0.006
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 22/143 (15%)
Query: 211 KVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKM 270
K KKKKK +E + + + E ++G +K+ K + E +KK
Sbjct: 2 KKKKKKKETEETE------ETEETEEEEEKEGKRKEKRKEKRKE-----------KEKKK 44
Query: 271 KSKKKVEQPVIEEPALKRKKKKKRKESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQV 330
K+K+ ++ EE KRK+K+K+K+ + +EE + + E + +E +
Sbjct: 45 KTKETEKRKEKEEEEKKRKRKRKKKKEEEEREEEEEEEEEEKE-----EEEKEEGRRRKK 99
Query: 331 RRKALQEEIDRESGKTEASETRK 353
++K ++E + E K +T+K
Sbjct: 100 KKKRRRKEEEEEKKKKRRRKTKK 122
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 47.0 bits (110), Expect = 4e-05
Identities = 41/219 (18%), Positives = 104/219 (47%), Gaps = 4/219 (1%)
Query: 136 RQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKKDEEQAA 195
R+ E+ R ++ ++++K+KK Q ++P R+ R+ + EE+
Sbjct: 945 REEREKRRRQERERQYRKDKKLQQKEEQLLGEEPEK-RRRQEREKKYREEEELQQEEEQL 1003
Query: 196 LGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVKVEAPEY 255
L ++R+++ +E + +KK ++ QE + L + R ++ R+ +++ ++ E +
Sbjct: 1004 LREEREKRRRQEWERQYRKKDELQQEEEQLLREEREKRRLQERERQYREEEELQQEEEQL 1063
Query: 256 IPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVAGDPWKEETDTDLEVV 315
+ + + + + + +K+ E EE L+ + +K+R++ +EE + E +
Sbjct: 1064 LGEERETRRRQELERQYRKEEELQQEEEQLLREEPEKRRRQERERQCREEEELQQEEEQL 1123
Query: 316 L-EKKGNMDEAHIDQVRRKALQEEIDRESGKTEASETRK 353
L E++ +++ R+ +EE+ +E + E K
Sbjct: 1124 LREEREKRRRQELERQYRE--EEEVQQEEEQLLREEPEK 1160
Score = 46.2 bits (108), Expect = 6e-05
Identities = 47/245 (19%), Positives = 111/245 (45%), Gaps = 23/245 (9%)
Query: 110 LSGEKKNKKSPLAMSHASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDP 169
L E+K ++ L A + + + +EE ++L++ ++EK+ Q+
Sbjct: 878 LEEERKRRRHTLYAKPALQEQLRKEQQLLQEEE---EELQREEREKRRRQE--------- 925
Query: 170 WFCEAREARDVGDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHS 229
+ R+ R+ + EE+ L ++R+++ +E + +K KK+ Q+ + L G
Sbjct: 926 ---QERQYREEEQL-----QQEEEQLLREEREKRRRQERERQYRKDKKLQQKEEQLLGEE 977
Query: 230 KPSRSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRK 289
R + +K +++ ++ E + + + + + + + +KK E EE L+ +
Sbjct: 978 PEKRRRQEREKKYREEEELQQEEEQLLREEREKRRRQEWERQYRKKDELQQEEEQLLREE 1037
Query: 290 KKKKRKESGVAGDPWKEETDTDLEVVL-EKKGNMDEAHIDQVRRKALQEEIDRESGKTEA 348
++K+R + +EE + E +L E++ +++ RK +EE+ +E +
Sbjct: 1038 REKRRLQERERQYREEEELQQEEEQLLGEERETRRRQELERQYRK--EEELQQEEEQLLR 1095
Query: 349 SETRK 353
E K
Sbjct: 1096 EEPEK 1100
Score = 45.1 bits (105), Expect = 1e-04
Identities = 69/343 (20%), Positives = 153/343 (44%), Gaps = 37/343 (10%)
Query: 56 GQAPEMPLVKKKKKKKKGVSTLC--EEHVEPETTLPARRTEKSPSLRK--QVFGHLEFLS 111
G+ PE ++++KK + L EE + E RR E RK ++ E L
Sbjct: 975 GEEPEKRRRQEREKKYREEEELQQEEEQLLREEREKRRRQEWERQYRKKDELQQEEEQLL 1034
Query: 112 GEKKNKKS----PLAMSHASGVKTSPDPRQGEE-ETRVGKKLKK-HKKEKKGAQDPTAFS 165
E++ K+ ++ + GEE ETR ++L++ ++KE++ Q+
Sbjct: 1035 REEREKRRLQERERQYREEEELQQEEEQLLGEERETRRRQELERQYRKEEELQQEEEQLL 1094
Query: 166 VQDPWFCEAREARDVGDTCSVGKK--DEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGD 223
++P E R ++ C ++ EE+ L ++R+++ +E + ++++++ QE +
Sbjct: 1095 REEP---EKRRRQERERQCREEEELQQEEEQLLREEREKRRRQELERQYREEEEVQQEEE 1151
Query: 224 ALPGHSKPSRSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEE 283
L R + R+ +++ ++ E + + +++ K +++ E+ EE
Sbjct: 1152 QLLREEPEKRRRQELERQYREEEELQQEEEQLL---------REEQEKRRQERERQYREE 1202
Query: 284 PALKRKKKKKR-KESGVAGD------PWKEETDTDLEVVLEKKGN-----MDEAHI-DQV 330
L+R+K+K+R ++ D P KE D +V + + N ++++ + D+
Sbjct: 1203 EELQRQKRKQRYRDEDQRSDLKWQWEPEKENAVRDNKVYCKGRENEQFRQLEDSQLRDRQ 1262
Query: 331 RRKALQEEIDRESGKTEASETRKWTGTQFGQWDTAGFENEDQK 373
++ LQ + + + E R+W + E E+QK
Sbjct: 1263 SQQDLQHLLGEQQERDREQERRRWQQRDRHFPEEEQLEREEQK 1305
Score = 41.2 bits (95), Expect = 0.002
Identities = 50/276 (18%), Positives = 124/276 (44%), Gaps = 13/276 (4%)
Query: 79 EEHVEPETTLPARRTEKSPSLRK--QVFGHLEFLSGEKKNKKSPLAMSHASGVKTSPDPR 136
EE + E RR E+ RK ++ E L GE+ K+ + + +
Sbjct: 940 EEQLLREEREKRRRQERERQYRKDKKLQQKEEQLLGEEPEKRR--RQEREKKYREEEELQ 997
Query: 137 QGEEETRVGKKLKKHKKE--KKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKKDEE-- 192
Q EE+ ++ K+ ++E ++ + ++ E RE R + + +++EE
Sbjct: 998 QEEEQLLREEREKRRRQEWERQYRKKDELQQEEEQLLREEREKRRLQERERQYREEEELQ 1057
Query: 193 ---QAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVK 249
+ LG++R+ + +E + +K++++ QE + L R + R+ +++ ++
Sbjct: 1058 QEEEQLLGEERETRRRQELERQYRKEEELQQEEEQLLREEPEKRRRQERERQCREEEELQ 1117
Query: 250 VEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVAGDPWKEETD 309
E + + + + + + + +++ E EE L+ + +K+R++ +EE
Sbjct: 1118 QEEEQLLREEREKRRRQELERQYREEEEVQQEEEQLLREEPEKRRRQELERQYREEEELQ 1177
Query: 310 TDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGK 345
+ E +L ++ ++ ++ R+ +EE+ R+ K
Sbjct: 1178 QEEEQLLREE--QEKRRQERERQYREEEELQRQKRK 1211
Score = 33.1 bits (74), Expect = 0.54
Identities = 56/302 (18%), Positives = 131/302 (43%), Gaps = 19/302 (6%)
Query: 57 QAPEMPLVKKKKKKKKGVSTLCE--EHVEPETTLPAR-RTEKSPSLRKQVFGHLEFLSGE 113
Q E P ++++K+++ L E E E + L R R + L +Q E+ E
Sbjct: 128 QLEEEPGQRRRQKRQEQERELAEGEEQSEKQERLEQRDRQRRDEELWRQ---RQEWQERE 184
Query: 114 KKNKKSPLAMSHASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCE 173
++ + S G +T P + + R +L++ +E+K Q QD F E
Sbjct: 185 ERRAEEEQLQS-CKGHETEEFPDEEQLRRRELLELRRKGREEKQQQRRER---QDRVFQE 240
Query: 174 AREARDVGDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKK--KKKIHQEGDALPGHSKP 231
E ++ +V +K+EE+ + ++++ +E +++K ++++ +E +
Sbjct: 241 EEE-KEWRKRETVLRKEEEKLQEEEPQRQRELQEEEEQLRKLERQELRRERQEEEQQQQR 299
Query: 232 SRSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKK 291
R + RK +++ E E + + +++ + + + EQ E L+R+++
Sbjct: 300 LRREQQLRRKQEEERR---EQQEERREQQERREQQEERREQQLRREQEERREQQLRREQE 356
Query: 292 KKRKESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASET 351
++R+E + + +E + L + + Q+RR ++++ RE +
Sbjct: 357 EERREQQLRREQEEERREQQLRREQQLRREQQLRREQQLRR---EQQLRREQQLRREQQL 413
Query: 352 RK 353
R+
Sbjct: 414 RR 415
>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
[Homo sapiens]
Length = 517
Score = 46.6 bits (109), Expect = 5e-05
Identities = 69/295 (23%), Positives = 117/295 (39%), Gaps = 46/295 (15%)
Query: 150 KHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKKDEEQAALGQKRKRKSPREHN 209
+ +KEK+G + + + D D+ + E+ K K+K+P
Sbjct: 191 EEEKEKRGRRKASELRIHDL-------EDDLEMSSDASDASGEEGGRVPKAKKKAPLAKG 243
Query: 210 GKVKKKKKIHQ------------EGDALPGHSKPSRSMESSPRKGSKKKPVKVEAPEYI- 256
G+ KKKKK EG + S S S + P + K P + E P+ +
Sbjct: 244 GRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEP-ESKAKAPQQEEGPKGVD 302
Query: 257 PISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVAGDPWKEETDTDLEVVL 316
SD + S ++K + K E+ E+ A ++KK+RK+S D EE+D D E
Sbjct: 303 EQSDSSEESEEEKPPEEDKEEEE--EKKAPTPQEKKRRKDSSEESDS-SEESDIDSEA-- 357
Query: 317 EKKGNMDEAHIDQVRRKALQEEIDRESGKTEASETRKWTGTQFGQWDTAGFENEDQKL-- 374
+ + ++K + + SG + +R T + G ++ KL
Sbjct: 358 -------SSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQ 410
Query: 375 ----------KFLRLMGGFKNLS-PSFSRPASTIARPNMALGKKAADSLQQNLQR 418
K LRL G ++LS S +P S PN + D++++ L R
Sbjct: 411 GKRVSEMPAAKRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTR 465
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 46.2 bits (108), Expect = 6e-05
Identities = 73/348 (20%), Positives = 128/348 (36%), Gaps = 29/348 (8%)
Query: 13 PEKKKKKKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPEMPLVKKKKKKKK 72
P +K + + T+Y++L + + L+ ++ GQ P P+VK+ K K++
Sbjct: 480 PAEKIIRVLFPGNSTQYNILEGLEKLKHLDFLKQPLATQKDLTGQVPT-PVVKQTKLKQR 538
Query: 73 GVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHASGVKTS 132
S E+ PA + S S+RK+ K+ ++H
Sbjct: 539 ADSR--------ESLKPAAKPLPSKSVRKE----------SKEETPEVTKVNHVE----K 576
Query: 133 PDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKKDEE 192
P + +E+ V K + K + S ++P +A A V K +
Sbjct: 577 PPKVESKEKVMVKKDKPIKTETKPSVTEKEVPSKEEPSPVKAEVAEK--QATDVKPKAAK 634
Query: 193 QAALGQKRKRKSPREHNGKVKKKKKIHQEGDALP--GHSKPSRSMESSPRKGSKKKPVKV 250
+ + ++ K K + K K KK++ ++ D P KP + K KK K
Sbjct: 635 EKTVKKETKVKPEDKKEEKEKPKKEVAKKEDKTPIKKEEKPKKEEVKKEVKKEIKKEEKK 694
Query: 251 EAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKK--KKKRKESGVAGDPWKEET 308
E + + PK K+ K +KK + +EP + KK K +K S + K
Sbjct: 695 EPKKEVKKETPPKEVKKEVKKEEKKEVKKEEKEPKKEIKKLPKDAKKSSTPLSEAKKPAA 754
Query: 309 DTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASETRKWTG 356
E+ D + + K + I +E EA TG
Sbjct: 755 LKPKVPKKEESVKKDSVAAGKPKEKGKIKVIKKEGKAAEAVAAAVGTG 802
Score = 32.0 bits (71), Expect = 1.2
Identities = 80/420 (19%), Positives = 143/420 (34%), Gaps = 77/420 (18%)
Query: 4 KTHKVDLGLPEKKKKKKVVKEPETRYSVLNNDDYFADVSPLRATSPS------------- 50
K K ++ EKK+ KK KEP+ L D + A P+
Sbjct: 707 KEVKKEVKKEEKKEVKKEEKEPKKEIKKLPKDAKKSSTPLSEAKKPAALKPKVPKKEESV 766
Query: 51 --KSVAHGQAPEMPLVKKKKKKKKGVSTLCEEHVEPETTL------------PARRTEKS 96
SVA G+ E +K KK+ K + TT PA+ E
Sbjct: 767 KKDSVAAGKPKEKGKIKVIKKEGKAAEAVAAAVGTGATTAAVMAAAGIAAIGPAKELEAE 826
Query: 97 PSL---------------------RKQVFGHLEFLSGEKKNKKSPLAMSH--------AS 127
SL K + LE + E+K K++ ++
Sbjct: 827 RSLMSSPEDLTKDFEELKAEEVDVTKDIKPQLELIEDEEKLKETEPVEAYVIQKEREVTK 886
Query: 128 GVKTSPD----PRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDT 183
G SPD +GE E + + EK+G D F + F E+ E D +
Sbjct: 887 GPAESPDEGITTTEGEGECEQTPE-ELEPVEKQGVDDIEKFEDEGAGFEESSETGDYEEK 945
Query: 184 CSVGKKD------EEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDAL-PGHSKPSRSME 236
+ + EE + + + E + K + I ++ +++ G + M+
Sbjct: 946 AETEEAEEPEEDGEEHVCVSASKHSPTEDEESAKAEADAYIREKRESVASGDDRAEEDMD 1005
Query: 237 SSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKK--- 293
+ KG ++ + EA E D + + + + V+++ A +++
Sbjct: 1006 EAIEKGEAEQS-EEEADEEDKAEDAREEEYEPEKMEAEDYVMAVVDKAAEAGGAEEQYGF 1064
Query: 294 ----RKESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEAS 349
K+ G A P +E + + L + D+ R+ EE SG T+++
Sbjct: 1065 LTTPTKQLG-AQSPGREPASSIHDETLPGGSESEATASDEENREDQPEEFTATSGYTQST 1123
Score = 29.6 bits (65), Expect = 6.0
Identities = 65/309 (21%), Positives = 104/309 (33%), Gaps = 40/309 (12%)
Query: 67 KKKKKKGVSTLCEEHVEPETTLPARRT-------------EKSPSLRKQVFGHLEFLSGE 113
K + ST C E E T P T +KSPS +Q S E
Sbjct: 2030 KTTRTPDTSTYCYETAEKITRTPQASTYSYETSDLCYTAEKKSPSEARQDVDLCLVSSCE 2089
Query: 114 KKNKKSPLAMSHASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCE 173
K+ K+ L+ S + P+P + ++ +K + GA P Q C+
Sbjct: 2090 YKHPKTELSPSFIN-----PNPLEWFASEEPTEESEKPLTQSGGAPPPPGGKQQGRQ-CD 2143
Query: 174 AREARDVGDTC------SVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPG 227
V ++ V + EE ++ S E K ++ D P
Sbjct: 2144 ETPPTSVSESAPSQTDSDVPPETEECPSITADANIDSEDESETIPTDKTVTYKHMDPPPA 2203
Query: 228 HSKPSRSMESSPRKGSKKKPVKVEAPEYIPISDDP----KASAKKKMKSKKKVEQPVIEE 283
P + SPR V + PE + I + K K+K K+KK +
Sbjct: 2204 ---PVQDRSPSPRHPD----VSMVDPEALAIEQNLGKALKKDLKEKTKTKKPGTKTKSSS 2256
Query: 284 PALKRKKKKKRKESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRES 343
P K K K + KE +D V KK + +++ + E+
Sbjct: 2257 PVKKSDGKSKPLAASPKPAGLKESSDKVSRVASPKK----KESVEKAAKPTTTPEVKAAR 2312
Query: 344 GKTEASETR 352
G+ + ET+
Sbjct: 2313 GEEKDKETK 2321
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 45.8 bits (107), Expect = 8e-05
Identities = 56/253 (22%), Positives = 105/253 (41%), Gaps = 29/253 (11%)
Query: 112 GEKKNK---KSPLAMSHASGVKTSPDPRQGEEETR---VGKKLKKHKKEKK-GAQDPTAF 164
G++ N+ +P+AM+ G S P + R +++KK + KK G++ F
Sbjct: 2 GKRDNRVAYMNPIAMARWRGPTQSVGPTIQDYLNRPRPTWEEVKKQLENKKTGSKALAEF 61
Query: 165 S--VQDPWFCEAREARD--VGDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQ 220
+ + W E ++R+ + S KK E + +KRK+KS R +
Sbjct: 62 EEKMNENWKKELEKSREKLLSGNESSSKKRERK----KKRKKKSCRSSSSSSSS------ 111
Query: 221 EGDALPGHSKPSRSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPV 280
+ + S+ + RK K + K + K S KKK KSK + E+
Sbjct: 112 DSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKSKDETEKEK 171
Query: 281 IEEPALKRKKKKKRKESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEID 340
+ +L +K+KK + E+D + +V +KK +E R+ +E++
Sbjct: 172 -DVRSLSKKRKKSYPDDKPLSSESSSESDYEEDVQAKKKRRCEE-------REQAKEKVK 223
Query: 341 RESGKTEASETRK 353
++ K ++K
Sbjct: 224 KKKKKQHKKHSKK 236
Score = 41.6 bits (96), Expect = 0.002
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 36/176 (20%)
Query: 141 ETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKKDEEQAALGQKR 200
E+ K+ +K K++KK + ++ S D + S ++E+ G++R
Sbjct: 85 ESSSKKRERKKKRKKKSCRSSSSSSSSD-------------SSSSSSDSEDEEKKQGKRR 131
Query: 201 KRKSPREHNGK--------------VKKKKKIHQEGDALPGHSKPSRSMESSPRKG-SKK 245
K+K R + VKKKKK E + K RS+ +K
Sbjct: 132 KKKKNRSYKSSQSSTHESESESKESVKKKKKSKDETEK----EKDVRSLSKKRKKSYPDD 187
Query: 246 KPVKVEAPEYIPISDDPKASAKKKMK----SKKKVEQPVIEEPALKRKKKKKRKES 297
KP+ E+ +D +A K++ + +K+KV++ ++ KKKKK+ S
Sbjct: 188 KPLSSESSSESDYEEDVQAKKKRRCEEREQAKEKVKKKKKKQHKKHSKKKKKKSGS 243
Score = 40.4 bits (93), Expect = 0.003
Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 38/245 (15%)
Query: 33 NNDDYFADVSPLRATSPSKSVA-------HGQAPEMPLVKKKKKKKKGVSTLCEEHVEPE 85
N Y ++ R P++SV + P VKK+ + KK S E E
Sbjct: 6 NRVAYMNPIAMARWRGPTQSVGPTIQDYLNRPRPTWEEVKKQLENKKTGSKALAEFEEKM 65
Query: 86 TTLPARRTEKSPSLRKQVFGHLEFLSGE-----KKNKKSPLAMSHASGVKTSPDPRQGEE 140
+ EKS R+++ E S + K+ KKS + S +S +S E+
Sbjct: 66 NENWKKELEKS---REKLLSGNESSSKKRERKKKRKKKSCRSSSSSSSSDSSSSSSDSED 122
Query: 141 ETRVGKKLKKHKKEK--KGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKKDEEQAALGQ 198
E + K +K KK + K +Q T S + ++ + +T +K+++ +L +
Sbjct: 123 EEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKSKDET----EKEKDVRSLSK 178
Query: 199 KRKRKSPR--------------EHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSK 244
KRK+ P E + + KKK++ + A K + + +K SK
Sbjct: 179 KRKKSYPDDKPLSSESSSESDYEEDVQAKKKRRCEEREQA---KEKVKKKKKKQHKKHSK 235
Query: 245 KKPVK 249
KK K
Sbjct: 236 KKKKK 240
Score = 35.8 bits (81), Expect = 0.083
Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 32/215 (14%)
Query: 12 LPEKKKKKKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPEMPLVKKKKKKK 71
L KK K + E E + N+++ ++ R K ++ ++ +KKK+KK
Sbjct: 48 LENKKTGSKALAEFEEKM----NENWKKELEKSR----EKLLSGNESSSKKRERKKKRKK 99
Query: 72 KGV--STLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNK--KSPLAMSHAS 127
K S+ ++ + EK R++ +KKN+ KS + +H S
Sbjct: 100 KSCRSSSSSSSSDSSSSSSDSEDEEKKQGKRRK----------KKKNRSYKSSQSSTHES 149
Query: 128 GVKTSPD---PRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTC 184
++ ++ ++ET K ++ K++K ++ P E+ D +
Sbjct: 150 ESESKESVKKKKKSKDETEKEKDVRSLSKKRK-----KSYPDDKPLSSESSSESDYEEDV 204
Query: 185 SVGKKD--EEQAALGQKRKRKSPREHNGKVKKKKK 217
KK EE+ +K K+K ++H KKKKK
Sbjct: 205 QAKKKRRCEEREQAKEKVKKKKKKQHKKHSKKKKK 239
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 45.4 bits (106), Expect = 1e-04
Identities = 45/220 (20%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Query: 131 TSPDPRQGEEETRVGKKLKKH-KKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKK 189
T + + ++ ++ K+++ KE+K ++ + + + + + D G
Sbjct: 2133 TKDEKKLARKQRKLANKMRRMINKEEKMTEEESKLA--------RKHSEVILDDEEEGGI 2184
Query: 190 DEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVK 249
+EE+ KR+ + +E K K+K + D + S MES + K++ +
Sbjct: 2185 EEEEVIPFLKRRWRKRKEAKRGDKPKEKFSSQVDEVESEEHFSEEMESLLDELEKQESLS 2244
Query: 250 VEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVAGDPWKEETD 309
E E ++ + ++ + ++K E+ E+ K +++KK+K+ + KEE
Sbjct: 2245 SEEEEEREEEEEREEEEVREEEEERKEEEEGEEKQVEKEEEEKKKKKK----EKKKEEVQ 2300
Query: 310 TDLEVVLEKKGNMDEAHIDQVRRK-------ALQEEIDRE 342
EV EK+ M E + + + +L+EE+DRE
Sbjct: 2301 EKEEVFEEKEEIMSEEETESLSDEEEEEESCSLEEEVDRE 2340
Score = 38.9 bits (89), Expect = 0.010
Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 15/229 (6%)
Query: 65 KKKKKKKKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMS 124
K+ K K+ S+ +E VE E L KQ E LS E++ ++
Sbjct: 2204 KRGDKPKEKFSSQVDE-VESEEHFSEEMESLLDELEKQ-----ESLSSEEEEEREEEEER 2257
Query: 125 HASGVKTSPDPRQGEEE--TRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGD 182
V+ + R+ EEE + +K ++ KK+KK + ++ F E E +
Sbjct: 2258 EEEEVREEEEERKEEEEGEEKQVEKEEEEKKKKKKEKKKEEVQEKEEVFEEKEEIMSEEE 2317
Query: 183 TCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSP--- 239
T S+ ++EE+ + + + +E K K+ K Q +L G + + P
Sbjct: 2318 TESLSDEEEEEESCSLEEEVDREKEILKKEKQFKLQEQRRKSLRGRERVLSILRGVPHGK 2377
Query: 240 ----RKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEP 284
R G K P+K + + + +K S + + V+E P
Sbjct: 2378 GRAIRLGVLKSPLKKLMSTALEMKEKTPVPVPEKQISWEDKKATVVEIP 2426
Score = 30.8 bits (68), Expect = 2.7
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 11/52 (21%)
Query: 261 DPKASAKK-KMKSKKKVEQ----------PVIEEPALKRKKKKKRKESGVAG 301
D KA+A+K K K KKK ++ PV+E+P K+ K + R SG++G
Sbjct: 1180 DKKATAQKLKKKHKKKGKEAKVINEETTPPVMEQPVTKKVKIQGRGASGISG 1231
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 45.4 bits (106), Expect = 1e-04
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 20/167 (11%)
Query: 188 KKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSKKKP 247
++ E + G+K K+K + GK +++K+ +E K R E RK KKK
Sbjct: 50 REKERKRERGKKEKKKRKKRERGKERERKRKERE-----KQRKERREKERRKRKKEKKKR 104
Query: 248 VKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVAGDPWKEE 307
+ + + KK+ K +++ + E KR+KKK+RKE K E
Sbjct: 105 ERKQRGR-------RERKKKKERKERERENKQRRERKRKKRRKKKRRKER-------KRE 150
Query: 308 TDTDLEVVLEKKGNMDEAHIDQVR-RKALQEEIDRESGKTEASETRK 353
+ KK +E + R RK ++E +R+ + E +K
Sbjct: 151 KERGKRERKRKKRKKEEREKKRERNRKERKKERERKERRERKKERKK 197
Score = 40.8 bits (94), Expect = 0.003
Identities = 46/219 (21%), Positives = 89/219 (40%), Gaps = 15/219 (6%)
Query: 121 LAMSHASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDV 180
++ SH S T + + +E K+ ++ +KE+K + + R+ R+
Sbjct: 20 VSCSHISKPCTQRESERKKERREREKRKREREKERKRERGKKEK--------KKRKKRER 71
Query: 181 GDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEG--DALPGHSKPSRSMESS 238
G +K+ E+ +K +R+ R K KKK++ Q G + + R E+
Sbjct: 72 GKERERKRKEREKQ---RKERREKERRKRKKEKKKRERKQRGRRERKKKKERKERERENK 128
Query: 239 PRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESG 298
R+ K+K + + + + ++K K +KK E+ E RK++KK +E
Sbjct: 129 QRRERKRKKRRKKKRRKERKREKERGKRERKRKKRKKEEREKKRER--NRKERKKERERK 186
Query: 299 VAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQE 337
+ KE + KK + D + L+E
Sbjct: 187 ERRERKKERKKERRKKKERKKDRKTDRQTDSQVFRPLRE 225
Score = 31.6 bits (70), Expect = 1.6
Identities = 29/153 (18%), Positives = 67/153 (43%), Gaps = 22/153 (14%)
Query: 201 KRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVKVEAPEYIPISD 260
+R+S R+ + ++K+K +E + K + +G +++ + E +
Sbjct: 31 QRESERKKERREREKRKREREKERKRERGKKEKKKRKKRERGKERERKRKER-------E 83
Query: 261 DPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVAGDPWKEETDTDLEVVLEKKG 320
+ ++K + K+K E+ E R+++KK+KE ++E + + + E+K
Sbjct: 84 KQRKERREKERRKRKKEKKKRERKQRGRRERKKKKE--------RKERERENKQRRERKR 135
Query: 321 NMDEAHIDQVRRKALQEEIDRESGKTEASETRK 353
+ R+K ++E RE + + RK
Sbjct: 136 K-------KRRKKKRRKERKREKERGKRERKRK 161
>gi|33356179 transcription termination factor, RNA polymerase I
[Homo sapiens]
Length = 905
Score = 45.1 bits (105), Expect = 1e-04
Identities = 69/247 (27%), Positives = 96/247 (38%), Gaps = 43/247 (17%)
Query: 68 KKKKKGVSTLCEEHVEPETTLPAR-RTEKSPSLRKQVFGHLEFLSG---EKKNKKS---- 119
K +K V +C + + E LP + +T+K L K E L EKKNKK
Sbjct: 117 KHFRKDVDVVCVD-MSIEQKLPRKPKTDKFQVLAKSHAHKSEALHSKVREKKNKKHQRKA 175
Query: 120 ------------PLAMSHASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQ 167
P + SH S P E K KK+KK + + ++
Sbjct: 176 ASWESQRARDTLPQSESHQEESWLSVGPGGEITELPASAHKNKSKKKKKKSSNREYETLA 235
Query: 168 DPWFCEA-REA-RDVGDTC-SVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDA 224
P +A REA D+ ++ +VG DE LG K+KS ++ KKKK HQE +A
Sbjct: 236 MPEGSQAGREAGTDMQESQPTVGLDDETPQLLGPTHKKKSKKK-----KKKKSNHQEFEA 290
Query: 225 LP-------GHSKPSRSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVE 277
L G + ES P G + + AP Y K +KKK K E
Sbjct: 291 LAMPEGSQVGSEVGADMQESRPAVGLHGETAGIPAPAY-------KNKSKKKKKKSNHQE 343
Query: 278 QPVIEEP 284
+ P
Sbjct: 344 FEAVAMP 350
Score = 35.0 bits (79), Expect = 0.14
Identities = 65/331 (19%), Positives = 117/331 (35%), Gaps = 55/331 (16%)
Query: 14 EKKKKKKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPEMPLVKKKKKKKKG 73
+KKKK + KE ++S + F D S + S + L+ KK
Sbjct: 17 KKKKKCSIHKERPQKHS----HEIFRDSSLVNEQSQITRRKKRKKDFQHLISSPLKK--- 69
Query: 74 VSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKN--------KKSPLAMSH 125
S +C+E +TL R+ + +L + + +K+N +K +
Sbjct: 70 -SRICDETANATSTLKKRKKRRYSALEVDEEAGVTVVLVDKENINNTPKHFRKDVDVVCV 128
Query: 126 ASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCS 185
++ + ++ +V K HK E ++ + + + E++ DT
Sbjct: 129 DMSIEQKLPRKPKTDKFQVLAKSHAHKSEALHSKVREKKNKKHQRKAASWESQRARDTLP 188
Query: 186 VGKKDEEQAAL----GQKRKRKSPREHNGKVKKKKKIHQEGD----ALPGHSKPSRSMES 237
+ +E++ L G + H K KKKKK + A+P S+ R +
Sbjct: 189 QSESHQEESWLSVGPGGEITELPASAHKNKSKKKKKKSSNREYETLAMPEGSQAGREAGT 248
Query: 238 SPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKV--------------------- 276
++ + E P+ + + K+ KKK KS +
Sbjct: 249 DMQESQPTVGLDDETPQLLGPTHKKKSKKKKKKKSNHQEFEALAMPEGSQVGSEVGADMQ 308
Query: 277 ----------EQPVIEEPALKRKKKKKRKES 297
E I PA K K KKK+K+S
Sbjct: 309 ESRPAVGLHGETAGIPAPAYKNKSKKKKKKS 339
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 44.3 bits (103), Expect = 2e-04
Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 21/217 (9%)
Query: 65 KKKKKKKKGVSTLCEEHVEPETTLPARRTEKSPSL--RKQVFGHLEFLSGEKKNKKSPLA 122
K K+K KK EE P+ + P E + + +++ E + EK+ +K A
Sbjct: 18 KAKEKDKKAEGAATEEEGTPKESEPQAAAEPAEAKEGKEKPDQDAEGKAEEKEGEKDAAA 77
Query: 123 MSHASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGD 182
+ K P+ +G E + + K ++++ A P A + P EA A
Sbjct: 78 AKEEAP-KAEPEKTEGAAEAKA--EPPKAPEQEQAAPGPAAGG-EAPKAAEAAAAPAESA 133
Query: 183 TCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKG 242
+ G++ ++ G+ +K ++P + K D P S E++P
Sbjct: 134 APAAGEEPSKEE--GEPKKTEAPAAPAAQETKS-------DGAPASDSKPGSSEAAP--S 182
Query: 243 SKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQP 279
SK+ P EAP P + P ASA++ K VE P
Sbjct: 183 SKETPAATEAPSSTPKAQGPAASAEE----PKPVEAP 215
>gi|32483374 nucleolar protein 5A [Homo sapiens]
Length = 594
Score = 44.3 bits (103), Expect = 2e-04
Identities = 68/278 (24%), Positives = 114/278 (41%), Gaps = 42/278 (15%)
Query: 6 HKVDLGLPEKKKKKKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPE-MPLV 64
H +G K K ++ + + S+ + D F++V TS Q E +
Sbjct: 353 HSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVP----TSVFGEKLREQVEERLSFY 408
Query: 65 KKKKKKKKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMS 124
+ + +K + + E V+ E E + L KQ L KK KK A++
Sbjct: 409 ETGEIPRKNLDVMKEAMVQAEEAA----AEITRKLEKQEKKRL------KKEKKRLAALA 458
Query: 125 HASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDP--WFCEAREARDVGD 182
AS +S P + EE + KK KK++K + P ++DP F + ++ +
Sbjct: 459 LASSENSSSTPEECEEMSEKPKK----KKKQKPQEVPQENGMEDPSISFSKPKKKKSFSK 514
Query: 183 TCSVGKKDEEQAALGQ--KRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPR 240
+ EE A KRK+ +P+E + ++ +A GH RS R
Sbjct: 515 EELMSSDLEETAGSTSIPKRKKSTPKE--------ETVNDPEEA--GH----RSGSKKKR 560
Query: 241 KGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQ 278
K SK++PV E + K+S+KKK K K ++
Sbjct: 561 KFSKEEPVSSGPEEAV-----GKSSSKKKKKFHKASQE 593
Score = 33.9 bits (76), Expect = 0.32
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 19/166 (11%)
Query: 215 KKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKK 274
+K QE L K ++ + + S P + E +S+ PK KKK K ++
Sbjct: 437 RKLEKQEKKRLKKEKKRLAALALASSENSSSTPEECEE-----MSEKPKK--KKKQKPQE 489
Query: 275 KVEQPVIEEPALK----RKKKKKRKESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQV 330
++ +E+P++ +KKK KE ++ D EET + KK E ++
Sbjct: 490 VPQENGMEDPSISFSKPKKKKSFSKEELMSSD--LEETAGSTSIPKRKKSTPKEETVND- 546
Query: 331 RRKALQEEIDRESGKTEASETRKWTGTQFGQWDTAGFENEDQKLKF 376
EE SG + + K G + G + +K KF
Sbjct: 547 -----PEEAGHRSGSKKKRKFSKEEPVSSGPEEAVGKSSSKKKKKF 587
>gi|217330641 IWS1 homolog [Homo sapiens]
Length = 819
Score = 44.3 bits (103), Expect = 2e-04
Identities = 46/238 (19%), Positives = 88/238 (36%), Gaps = 27/238 (11%)
Query: 132 SPDPRQGEEETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKKDE 191
S DP + + ++L K + ++ P D +A + ++ D
Sbjct: 278 SEDPPRNQASDSENEELPKPRVSDSESEGPQKGPASDSETEDASRHKQKPES----DDDS 333
Query: 192 EQAALGQKRKRKSPREHNGKVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVKVE 251
++ G+ + ++ H+ +KK H H K + ++G ++K K +
Sbjct: 334 DRENKGEDTEMQNDSFHSDSHMDRKKFHSSDSEEEEHKKQKMDSDEDEKEGEEEKVAKRK 393
Query: 252 APEYIPISDDPKASAKK-----------------KMKSKKKVEQPVIEEPALKRKKKKKR 294
A D+ KASAKK K ++K EE A K KK
Sbjct: 394 AAVLSDSEDEEKASAKKSRVVSDADDSDSDAVSDKSGKREKTIASDSEEEAGKELSDKKN 453
Query: 295 KESGVAGDPWK--EETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASE 350
+E + G + E + + + + G+ +E QE+++ E G+T+ E
Sbjct: 454 EEKDLFGSDSESGNEEENLIADIFGESGDEEEEEFTGFN----QEDLEEEKGETQVKE 507
>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
[Homo sapiens]
Length = 651
Score = 43.9 bits (102), Expect = 3e-04
Identities = 61/281 (21%), Positives = 110/281 (39%), Gaps = 27/281 (9%)
Query: 113 EKKNKKSPLAMSHASGVKTSPDPRQGEEETRVGKK-LKKHKKEKKGAQDPTAFSVQDPWF 171
+K +KK + S S D + ++T+ KK LKK K+K + P + +
Sbjct: 318 KKDDKKKDVKKDTESTDAESGDSKDERKDTKKDKKKLKKDDKKKDTKKYPESTDTESG-- 375
Query: 172 CEAREARDVGDTCSVGKKDEEQAALGQK--------RKRKSPREHNGKVKKKKKIHQEGD 223
+A++AR+ K++++ +K + +S + K KK +
Sbjct: 376 -DAKDARNDSRNLKKASKNDDKKKDAKKITFSTDSESELESKESQKDEKKDKKDSKTDNK 434
Query: 224 ALPGHSKPSRSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPVIEE 283
+ + S +S P KG KK K E D K KKK +KK E +E
Sbjct: 435 KSVKNDEESTDADSEP-KGDSKKGKKDEKKG----KKDSKKDDKKK-DAKKNAESTEMES 488
Query: 284 PALKRKKKKKRKESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRES 343
+K KK KE K+ + D++ K +A D+ + + +
Sbjct: 489 DLELKKDKKHSKE--------KKGSKKDIKKDARKDTESTDAEFDESSKTGFKTSTKIKG 540
Query: 344 GKTEASETRKWTGTQFGQWDTAGFENEDQKLKFLRLMGGFK 384
TE+ E+ G + + D + + + K++ L GF+
Sbjct: 541 SDTESEESLYKPGAK-KKIDESDGTSANSKMEGLESKRGFR 580
Score = 39.7 bits (91), Expect = 0.006
Identities = 69/345 (20%), Positives = 121/345 (35%), Gaps = 60/345 (17%)
Query: 42 SPLRATSPSKSVAHGQAPEMPLVKKKKKKKKGVST---LCEEHVEPETTLPARRTEKSPS 98
+PL+ S K ++ PE + ++K K++ + L H ++ +E +P
Sbjct: 125 TPLKKDSKKKGGSYATNPESKQIVEEKTKRQNEADKTPLKSSHENEQSKKSKSSSETNPE 184
Query: 99 LRKQVFGHLEFLSGEKKNKKSPLAMSHASGVKTSPDPRQGEEETRVGKKLKKHKKEKKGA 158
+ +KK+ K+ ++ + T +P KK K K +
Sbjct: 185 SQNSKTVSKNCSQKDKKDSKNS-KKTNTEFLHTKNNP-------------KKDLKRSKTS 230
Query: 159 QDPTAFSVQDPWFCEAREARDVGDTCSVGKKDEEQAAL-------GQKRKRKSPREHNGK 211
DP + + + +V VG+ D+E Q + ++
Sbjct: 231 NDPISEICSE-------NSLNVDFLMLVGQSDDESINFDAWLRNYSQNNSKNYSLKYTKY 283
Query: 212 VKK------KKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVKVEAPEYIPISDDPKAS 265
KK KK E + K S+ ++ + +K KKK VK + S D K
Sbjct: 284 TKKDTKKNAKKSSDAESEDSKDAKKDSKKVKKNVKKDDKKKDVKKDTESTDAESGDSKDE 343
Query: 266 AKKKMKSKKKVEQPVIEEPALK-------------------RKKKKKRKESGVAGDPWKE 306
K K KKK+++ ++ K R KK K D K
Sbjct: 344 RKDTKKDKKKLKKDDKKKDTKKYPESTDTESGDAKDARNDSRNLKKASKNDDKKKDAKKI 403
Query: 307 ETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASET 351
TD E LE K E+ D+ + K + +++S K + T
Sbjct: 404 TFSTDSESELESK----ESQKDEKKDKKDSKTDNKKSVKNDEEST 444
>gi|162287219 prune homolog 2 [Homo sapiens]
Length = 3088
Score = 43.5 bits (101), Expect = 4e-04
Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 29/214 (13%)
Query: 156 KGAQDPTAFSVQ--DPWFCEAREARDVGDTCSVGKKDEEQAALGQKRKRKSPREHNGKVK 213
+G++ T F+V+ +PW E +EA V D E A + K +P EH+ +
Sbjct: 1159 EGSEPETRFTVRQLEPWGLEYQEANQV---------DWELPASDEHTKDSAPSEHHTLNE 1209
Query: 214 KKKKI-------------HQEGDALPG--HSKPSRSMESSPRKGSKKKPVK-VEAPEYIP 257
K ++ LPG H S E P S VK +P+
Sbjct: 1210 KSGQLIANSIWDSVMRDKDMSSFMLPGSSHITDSEQRELPPEIPSHSANVKDTHSPDAPA 1269
Query: 258 ISDDPKASAKKKMKSKKKVEQPVIEEPALKRKKKKKRKESGVAGDPWKEETDTDLEVVLE 317
S ++ A K+ E+ ++ A + + DPWK D E E
Sbjct: 1270 ASGTSESEALISHLDKQDTERETLQSDAASLATRLENPGYFPHPDPWKGHGDGQSESEKE 1329
Query: 318 KKGNMDEAHIDQVRRKALQEEIDRESGKTEASET 351
+G D H+D+ + + ++ SG +E ++
Sbjct: 1330 AQGATDRGHLDE--EEVIASGVENASGISEKGQS 1361
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.126 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,691,430
Number of Sequences: 37866
Number of extensions: 1040753
Number of successful extensions: 7443
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 514
Number of HSP's that attempted gapping in prelim test: 5013
Number of HSP's gapped (non-prelim): 1797
length of query: 458
length of database: 18,247,518
effective HSP length: 106
effective length of query: 352
effective length of database: 14,233,722
effective search space: 5010270144
effective search space used: 5010270144
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.