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Search of human proteins with 111548662
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|111548662 hypothetical protein LOC348378 [Homo sapiens]
(190 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|111548662 hypothetical protein LOC348378 [Homo sapiens] 401 e-112
gi|169167848 PREDICTED: hypothetical protein LOC100132916 [Homo ... 138 3e-33
gi|169167926 PREDICTED: hypothetical protein LOC100132916 [Homo ... 138 3e-33
gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo ... 137 6e-33
gi|39930575 shisa homolog 4 [Homo sapiens] 35 0.039
gi|122937450 shisa homolog 3 [Homo sapiens] 33 0.19
gi|56788385 myelin oligodendrocyte glycoprotein isoform beta1 pr... 32 0.25
gi|56788381 myelin oligodendrocyte glycoprotein isoform alpha1 p... 32 0.25
gi|56788393 myelin oligodendrocyte glycoprotein isoform beta5 pr... 32 0.33
gi|56788391 myelin oligodendrocyte glycoprotein isoform beta2 pr... 32 0.33
gi|56788389 myelin oligodendrocyte glycoprotein isoform alpha3 p... 32 0.33
gi|56788387 myelin oligodendrocyte glycoprotein isoform beta3 pr... 32 0.33
gi|56788383 myelin oligodendrocyte glycoprotein isoform alpha2 p... 32 0.33
gi|29788778 proline rich membrane anchor 1 precursor [Homo sapiens] 32 0.43
gi|239744140 PREDICTED: hypothetical protein [Homo sapiens] 31 0.73
gi|169191513 PREDICTED: hypothetical protein isoform 1 [Homo sap... 31 0.73
gi|150170710 hypothetical protein LOC728118 [Homo sapiens] 31 0.73
gi|150010659 hypothetical protein LOC85352 [Homo sapiens] 30 0.96
gi|17986001 major histocompatibility complex, class I, B precurs... 30 1.3
gi|56090523 shisa homolog 2 [Homo sapiens] 30 1.3
gi|21703710 scotin [Homo sapiens] 29 2.1
gi|40807477 retinoic acid induced 1 [Homo sapiens] 29 2.8
gi|218084958 anoctamin 4 [Homo sapiens] 28 3.6
gi|211904177 hypothetical protein LOC388336 [Homo sapiens] 28 3.6
gi|148806874 hypothetical protein LOC54754 [Homo sapiens] 28 3.6
gi|46409310 zinc finger protein 467 [Homo sapiens] 28 4.8
gi|4758894 PET112-like [Homo sapiens] 28 6.2
gi|44662807 hypothetical protein LOC388407 [Homo sapiens] 28 6.2
gi|223633890 hypothetical protein LOC729956 [Homo sapiens] 27 8.1
gi|119943102 CREB binding protein isoform b [Homo sapiens] 27 8.1
>gi|111548662 hypothetical protein LOC348378 [Homo sapiens]
Length = 190
Score = 401 bits (1031), Expect = e-112
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MSGACTSYVSAEQEVVRGFSCPRPGGEAAAVFCCGFRDHKYCCDDPHSFFPYEHSYMWWL 60
MSGACTSYVSAEQEVVRGFSCPRPGGEAAAVFCCGFRDHKYCCDDPHSFFPYEHSYMWWL
Sbjct: 1 MSGACTSYVSAEQEVVRGFSCPRPGGEAAAVFCCGFRDHKYCCDDPHSFFPYEHSYMWWL 60
Query: 61 SIGALIGLSVAAVVLLAFIVTACVLCYLFISSKPHTKLDLGLSLQTAGPEEVSPDCQGVN 120
SIGALIGLSVAAVVLLAFIVTACVLCYLFISSKPHTKLDLGLSLQTAGPEEVSPDCQGVN
Sbjct: 61 SIGALIGLSVAAVVLLAFIVTACVLCYLFISSKPHTKLDLGLSLQTAGPEEVSPDCQGVN 120
Query: 121 TGMAAEVPKVSPLQQSYSCLNPQLESNEGQAVNSKRLLHHCFMATVTTSDIPGSPEEASV 180
TGMAAEVPKVSPLQQSYSCLNPQLESNEGQAVNSKRLLHHCFMATVTTSDIPGSPEEASV
Sbjct: 121 TGMAAEVPKVSPLQQSYSCLNPQLESNEGQAVNSKRLLHHCFMATVTTSDIPGSPEEASV 180
Query: 181 PNPDLCGPVP 190
PNPDLCGPVP
Sbjct: 181 PNPDLCGPVP 190
>gi|169167848 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
Length = 160
Score = 138 bits (347), Expect = 3e-33
Identities = 64/108 (59%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 2 SGACTSYVSAEQEVVRGFSCPRPGGEAAAVFCCGFRDHKYCCDDPHSFFPYEHSYMWWLS 61
S C+ Y S Q V F CPR G AA +CCGF D KYCC +P S+FPY+HSYMW LS
Sbjct: 5 SRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYMWSLS 64
Query: 62 IGALIGLSVAAVVLLAFIVTACVLCYLFISSKPHTKLDLGLSLQTAGP 109
IGALIGL +AA+VLLAF+++ CVLCYLF+ +KP +LD GL LQ P
Sbjct: 65 IGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQ-RLDTGLKLQHLEP 111
>gi|169167926 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
Length = 160
Score = 138 bits (347), Expect = 3e-33
Identities = 64/108 (59%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 2 SGACTSYVSAEQEVVRGFSCPRPGGEAAAVFCCGFRDHKYCCDDPHSFFPYEHSYMWWLS 61
S C+ Y S Q V F CPR G AA +CCGF D KYCC +P S+FPY+HSYMW LS
Sbjct: 5 SRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYMWSLS 64
Query: 62 IGALIGLSVAAVVLLAFIVTACVLCYLFISSKPHTKLDLGLSLQTAGP 109
IGALIGL +AA+VLLAF+++ CVLCYLF+ +KP +LD GL LQ P
Sbjct: 65 IGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQ-RLDTGLKLQHLEP 111
>gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
Length = 160
Score = 137 bits (345), Expect = 6e-33
Identities = 63/104 (60%), Positives = 76/104 (73%), Gaps = 1/104 (0%)
Query: 2 SGACTSYVSAEQEVVRGFSCPRPGGEAAAVFCCGFRDHKYCCDDPHSFFPYEHSYMWWLS 61
S C+ Y S Q V F CPR G AA +CCGF D KYCC +P S+FPY+HSYMW LS
Sbjct: 5 SRLCSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSEPGSYFPYKHSYMWSLS 64
Query: 62 IGALIGLSVAAVVLLAFIVTACVLCYLFISSKPHTKLDLGLSLQ 105
IGALIGL +AA+VLLAF+++ CVLCYLF+ +KP +LD GL LQ
Sbjct: 65 IGALIGLGIAALVLLAFVISVCVLCYLFLYTKPQ-RLDTGLKLQ 107
>gi|39930575 shisa homolog 4 [Homo sapiens]
Length = 197
Score = 35.0 bits (79), Expect = 0.039
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 5 CTSYVSAEQEVVRGFSCPRPGGEAAAVFCCGFRDHKYCCDDPHSFF-PYEHSYMWWLSIG 63
C Y+ GF+C FCCG H+YCC D + + S
Sbjct: 31 CLWYLDRNGSWHPGFNCE------FFTFCCGTCYHRYCCRDLTLLITERQQKHCLAFSPK 84
Query: 64 ALIGLSVAAVVLLAFIVTA-----CVLCYLF 89
+ G++ A ++ +A + T C CYL+
Sbjct: 85 TIAGIASAVILFVAVVATTICCFLCSCCYLY 115
>gi|122937450 shisa homolog 3 [Homo sapiens]
Length = 238
Score = 32.7 bits (73), Expect = 0.19
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 5 CTSYVSAEQEVVRGFSCPRPGGEAAAVFCCGFRDHKYCC 43
C +V + GF CP A CCG +YCC
Sbjct: 28 CHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCC 66
>gi|56788385 myelin oligodendrocyte glycoprotein isoform beta1
precursor [Homo sapiens]
Length = 252
Score = 32.3 bits (72), Expect = 0.25
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 32 FCCGFRDHKYCCDDPHSFFPYEHSYMWWLSIGALIGLSVAAVVLLAFIVTACVLCYLFIS 91
F C FRDH Y ++ E + +W+S G L+ L+V V+LL V LC L
Sbjct: 125 FTCFFRDHSYQ-EEAAMELKVEDPF-YWVSPGVLVLLAVLPVLLLQITVGLIFLC-LQYR 181
Query: 92 SKPHTKLDLGLSLQTAGPEEVSPDCQGVNTGMAAEVPKVSPLQQSYSCLN 141
+ + ++ +T P + C + + VP + PL C N
Sbjct: 182 LRGKLRAEIENLHRTFDPHFLRVPCWKIT--LFVIVPVLGPLVALIICYN 229
>gi|56788381 myelin oligodendrocyte glycoprotein isoform alpha1
precursor [Homo sapiens]
Length = 247
Score = 32.3 bits (72), Expect = 0.25
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 32 FCCGFRDHKYCCDDPHSFFPYEHSYMWWLSIGALIGLSVAAVVLLAFIVTACVLCYLFIS 91
F C FRDH Y ++ E + +W+S G L+ L+V V+LL V LC L
Sbjct: 125 FTCFFRDHSYQ-EEAAMELKVEDPF-YWVSPGVLVLLAVLPVLLLQITVGLIFLC-LQYR 181
Query: 92 SKPHTKLDLGLSLQTAGPEEVSPDCQGVNTGMAAEVPKVSPLQQSYSCLN 141
+ + ++ +T P + C + + VP + PL C N
Sbjct: 182 LRGKLRAEIENLHRTFDPHFLRVPCWKIT--LFVIVPVLGPLVALIICYN 229
>gi|56788393 myelin oligodendrocyte glycoprotein isoform beta5
precursor [Homo sapiens]
Length = 213
Score = 32.0 bits (71), Expect = 0.33
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 32 FCCGFRDHKYCCDDPHSFFPYEHSYMWWLSIGALIGLSVAAVVLLAFIVTACVLC 86
F C FRDH Y ++ E + +W+S G L+ L+V V+LL V LC
Sbjct: 125 FTCFFRDHSYQ-EEAAMELKVEDPF-YWVSPGVLVLLAVLPVLLLQITVGLIFLC 177
>gi|56788391 myelin oligodendrocyte glycoprotein isoform beta2
precursor [Homo sapiens]
Length = 206
Score = 32.0 bits (71), Expect = 0.33
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 32 FCCGFRDHKYCCDDPHSFFPYEHSYMWWLSIGALIGLSVAAVVLLAFIVTACVLC 86
F C FRDH Y ++ E + +W+S G L+ L+V V+LL V LC
Sbjct: 125 FTCFFRDHSYQ-EEAAMELKVEDPF-YWVSPGVLVLLAVLPVLLLQITVGLIFLC 177
>gi|56788389 myelin oligodendrocyte glycoprotein isoform alpha3
precursor [Homo sapiens]
Length = 224
Score = 32.0 bits (71), Expect = 0.33
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 32 FCCGFRDHKYCCDDPHSFFPYEHSYMWWLSIGALIGLSVAAVVLLAFIVTACVLC 86
F C FRDH Y ++ E + +W+S G L+ L+V V+LL V LC
Sbjct: 125 FTCFFRDHSYQ-EEAAMELKVEDPF-YWVSPGVLVLLAVLPVLLLQITVGLIFLC 177
>gi|56788387 myelin oligodendrocyte glycoprotein isoform beta3
precursor [Homo sapiens]
Length = 229
Score = 32.0 bits (71), Expect = 0.33
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 32 FCCGFRDHKYCCDDPHSFFPYEHSYMWWLSIGALIGLSVAAVVLLAFIVTACVLC 86
F C FRDH Y ++ E + +W+S G L+ L+V V+LL V LC
Sbjct: 125 FTCFFRDHSYQ-EEAAMELKVEDPF-YWVSPGVLVLLAVLPVLLLQITVGLIFLC 177
>gi|56788383 myelin oligodendrocyte glycoprotein isoform alpha2
precursor [Homo sapiens]
Length = 208
Score = 32.0 bits (71), Expect = 0.33
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 32 FCCGFRDHKYCCDDPHSFFPYEHSYMWWLSIGALIGLSVAAVVLLAFIVTACVLC 86
F C FRDH Y ++ E + +W+S G L+ L+V V+LL V LC
Sbjct: 125 FTCFFRDHSYQ-EEAAMELKVEDPF-YWVSPGVLVLLAVLPVLLLQITVGLIFLC 177
>gi|29788778 proline rich membrane anchor 1 precursor [Homo sapiens]
Length = 153
Score = 31.6 bits (70), Expect = 0.43
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 51 PYEHSYMWWLSIGALIGLSVAAVVLLAFIVTACVLCYLFISSKPHTKLDLGLSLQTAGPE 110
P E S WW + +I + A++V L +V ++CY I KP K + G S+ P
Sbjct: 84 PTEES--WWSGLVIIIAVCCASLVFLTVLV---IICYKAIKRKPLRKDENGTSV-AEYPM 137
Query: 111 EVSPDCQGVNTGMA 124
S +GV+ A
Sbjct: 138 SASQSNKGVDVNNA 151
>gi|239744140 PREDICTED: hypothetical protein [Homo sapiens]
Length = 878
Score = 30.8 bits (68), Expect = 0.73
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 106 TAGPEEVSPDCQGVNTGMAAEVPKVSPLQQSYSCLNPQLESNE 148
T+ P++ P C GV T A ++P SP+++S+ E E
Sbjct: 715 TSPPQDHRPTCPGVGTKDALDLPGGSPVRESHGLAQGSSEEEE 757
>gi|169191513 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 878
Score = 30.8 bits (68), Expect = 0.73
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 106 TAGPEEVSPDCQGVNTGMAAEVPKVSPLQQSYSCLNPQLESNE 148
T+ P++ P C GV T A ++P SP+++S+ E E
Sbjct: 715 TSPPQDHRPTCPGVGTKDALDLPGGSPVRESHGLAQGSSEEEE 757
>gi|150170710 hypothetical protein LOC728118 [Homo sapiens]
Length = 878
Score = 30.8 bits (68), Expect = 0.73
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 106 TAGPEEVSPDCQGVNTGMAAEVPKVSPLQQSYSCLNPQLESNE 148
T+ P++ P C GV T A ++P SP+++S+ E E
Sbjct: 715 TSPPQDHRPTCPGVGTKDALDLPGGSPVRESHGLAQGSSEEEE 757
>gi|150010659 hypothetical protein LOC85352 [Homo sapiens]
Length = 199
Score = 30.4 bits (67), Expect = 0.96
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 5 CTSYVSAEQEVVRGFSCPRPGGEAAAVFCCGFRD--HKYCCDD 45
C Y + GF CPR + CC + KYCC++
Sbjct: 31 CEPYTDHKGRYHFGFHCPRLSDNKTFILCCHHNNTVFKYCCNE 73
>gi|17986001 major histocompatibility complex, class I, B precursor
[Homo sapiens]
Length = 362
Score = 30.0 bits (66), Expect = 1.3
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 23 RPGGEA-----AAVFCCGFRDHKYCCDDPHSFFPYEHSYMWWLS-------IGALIGLSV 70
RP G+ AAV + +Y C H P + W S +G + GL+V
Sbjct: 258 RPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAV 317
Query: 71 AAVVLLAFIVTACVLC 86
AVV++ +V A V+C
Sbjct: 318 LAVVVIGAVV-AAVMC 332
>gi|56090523 shisa homolog 2 [Homo sapiens]
Length = 295
Score = 30.0 bits (66), Expect = 1.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 5 CTSYVSAEQEVVRGFSCPRPGGEAAAVFCCGFRDHKYCC 43
C ++ A+ GF CP A CCG +YCC
Sbjct: 38 CHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCC 76
>gi|21703710 scotin [Homo sapiens]
Length = 240
Score = 29.3 bits (64), Expect = 2.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 27 EAAAVFCCGFRDHKYCCDD 45
E+ FCCG D +YCC D
Sbjct: 42 ESCPDFCCGTCDDQYCCSD 60
>gi|40807477 retinoic acid induced 1 [Homo sapiens]
Length = 1906
Score = 28.9 bits (63), Expect = 2.8
Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 99 DLGLSLQTAGPEEVSPDCQGVNTGMAAEVPKVSPLQQSYSCLNPQLESNEGQAVNSKRLL 158
D GL P V V TG PL C NP S +G+ +NSK+L
Sbjct: 1365 DRGLKGAGGSPVGVEEGLVNVGTGQKLPTSGADPL-----CRNPTNRSLKGKLMNSKKLS 1419
Query: 159 H-HCFMATVTTS 169
CF TS
Sbjct: 1420 STDCFKTEAFTS 1431
>gi|218084958 anoctamin 4 [Homo sapiens]
Length = 920
Score = 28.5 bits (62), Expect = 3.6
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 34 CGFRDHKYCCDDPHSFFPYEHSYMWWLSIGALIGLSV 70
C +RD++ D PHS PY ++ +W + A + +
Sbjct: 821 CRYRDYR---DPPHSLVPYGYTLQFWHVLAARLAFII 854
>gi|211904177 hypothetical protein LOC388336 [Homo sapiens]
Length = 551
Score = 28.5 bits (62), Expect = 3.6
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 5 CTSYVSAEQEVVRGFSCPRPGGEAAAVFCCGFRDHKYCCDDPH 47
C Y + + F C E+ ++CCG +++CC H
Sbjct: 94 CWGYYDVSGQYDKEFECNN--SESGYLYCCGTCYYRFCCKKRH 134
>gi|148806874 hypothetical protein LOC54754 [Homo sapiens]
Length = 756
Score = 28.5 bits (62), Expect = 3.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 106 TAGPEEVSPDCQGVNTGMAAEVPKVSPLQQSYSCLNPQLESNE 148
T+ P++ P C G+ T A +P SP+++S+ E E
Sbjct: 593 TSPPQDHRPTCPGLGTKDALGLPGESPVKESHGLAKGSSEETE 635
>gi|46409310 zinc finger protein 467 [Homo sapiens]
Length = 595
Score = 28.1 bits (61), Expect = 4.8
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 105 QTAGPEEVSPDCQGVNTGMAAEVPKVSPLQQSYSCLNPQLESNEGQAVNSKRLLHHC--- 161
QTAGP SPD A P + ++C + L + + + + LH
Sbjct: 323 QTAGPARPSPDSSASPHSTAPSPTPSFPGPKPFACSDCGLSFGWKKNLATHQCLHRSEGR 382
Query: 162 -----FMATVTTSDIPGSPEEASVPNPDLCGP 188
A T D P + AS P CGP
Sbjct: 383 PFGCDECALGATVDAPAAKPLASAPGGPGCGP 414
>gi|4758894 PET112-like [Homo sapiens]
Length = 557
Score = 27.7 bits (60), Expect = 6.2
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 118 GVNTGMAAEVPKVSPLQQSYSCLNPQLE------SNEGQAVNSKRLLHHCFMATVTTSDI 171
G G+ EV ++ ++ ++ +++ N G+ +N R HH T++ D
Sbjct: 270 GEPLGVRTEVKNLNSIRFLAKAIDYEIQRQINELENGGEILNETRSFHHKLGCTMSMRDK 329
Query: 172 PGSPEEASVPNPDL 185
G + +P P+L
Sbjct: 330 EGKQDYRFMPEPNL 343
>gi|44662807 hypothetical protein LOC388407 [Homo sapiens]
Length = 251
Score = 27.7 bits (60), Expect = 6.2
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 128 PKVSPLQQ-SYSCLNPQLESNEGQAVNSKRLLHHCFMATVTTSDIP----GSPEEASVPN 182
PK SP S++ L P++ S GQA + +R C P GSP S +
Sbjct: 28 PKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGH 87
Query: 183 P 183
P
Sbjct: 88 P 88
>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
Length = 538
Score = 27.3 bits (59), Expect = 8.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 26 GEAAAVFCCGFRDHKYCCDDPHSFFPYEHSYM 57
G+ A F C +++CC H F EH +M
Sbjct: 90 GQYDATFNCSTGSYRFCCGTCHYRFCCEHRHM 121
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 27.3 bits (59), Expect = 8.1
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 114 PDCQGVNTGMAAEVPK--VSPLQQSYSCLNPQLESNEGQAVNSKRLLHHCFMATV 166
P Q +N M A VP+ V P QQ+ LNPQ GQA+N H+ MA++
Sbjct: 2099 PSLQNLNA-MQAGVPRPGVPPQQQAMGGLNPQ-----GQALNIMNPGHNPNMASM 2147
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,575,621
Number of Sequences: 37866
Number of extensions: 381445
Number of successful extensions: 1175
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1152
Number of HSP's gapped (non-prelim): 32
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.